Chromosome and Associated Proteins - Oryza sativa japonica (Japanese rice) (RAPDB)

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     KO
 Eukaryotic type
   Sister chromatid cohesion proteins
   Meiosis-specific sister chromatid cohesion proteins
   Nucleosome assembly factors
   Histone modification proteins
     HATs (histone acetyltransferases)
     HAT complexes
       PCAF complex
         Os10t0415900-01 Os10g0415900; Similar to General control of amino-acid synthesis 5-like 2 (Fragment).
         Os03t0750800-01 Os03g0750800; Similar to Transcriptional adaptor (Fragment).
         Os06t0649500-01 Os06g0649500; WD40 repeat-like domain containing protein.
         Os01t0510800-01 Os01g0510800; Histone-fold domain containing protein.
         Os03t0408500-01 Os03g0408500; Similar to Transcription initiation factor IID, 31kD subunit family protein, expressed.
         Os09t0431500-01 Os09g0431500; Similar to TATA box-binding protein associated factor 10.
         Os01t0846900-01 Os01g0846900; Histone-fold domain containing protein.
         Os01t0858500-01 Os01g0858500; Similar to Transcription initiation factor TFIID subunit 12 (Transcription initiation factor TFIID 20/15 kDa subunits) (TAFII-20/TAFII-15) (TAFII20/TAFII15).
K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
K11314 TADA2A; transcriptional adapter 2-alpha 
K03130 TAF5; transcription initiation factor TFIID subunit 5 
K03131 TAF6; transcription initiation factor TFIID subunit 6 
K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
K03134 TAF10; transcription initiation factor TFIID subunit 10 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
       STAGA complex
         Os10t0415900-01 Os10g0415900; Similar to General control of amino-acid synthesis 5-like 2 (Fragment).
         Os06t0649500-01 Os06g0649500; WD40 repeat-like domain containing protein.
         Os01t0510800-01 Os01g0510800; Histone-fold domain containing protein.
         Os03t0408500-01 Os03g0408500; Similar to Transcription initiation factor IID, 31kD subunit family protein, expressed.
         Os09t0431500-01 Os09g0431500; Similar to TATA box-binding protein associated factor 10.
         Os01t0846900-01 Os01g0846900; Histone-fold domain containing protein.
         Os01t0858500-01 Os01g0858500; Similar to Transcription initiation factor TFIID subunit 12 (Transcription initiation factor TFIID 20/15 kDa subunits) (TAFII-20/TAFII-15) (TAFII20/TAFII15).
         Os07t0203700-01 Os07g0203700; Cleavage and polyadenylation specificity factor, A subunit, C-terminal domain containing protein.
         Os02t0137400-01 Os02g0137400; Similar to Spliceosomal-like protein.
K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
K03130 TAF5; transcription initiation factor TFIID subunit 5 
K03131 TAF6; transcription initiation factor TFIID subunit 6 
K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
K03134 TAF10; transcription initiation factor TFIID subunit 10 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
K12830 SF3B3; splicing factor 3B subunit 3 
K12830 SF3B3; splicing factor 3B subunit 3 
       TFTC complex
         Os10t0415900-01 Os10g0415900; Similar to General control of amino-acid synthesis 5-like 2 (Fragment).
         Os03t0441000-01 Os03g0441000; Similar to Transcription initiation factor TFIID component TAF4 family protein, expressed.
         Os02t0654400-01 Os02g0654400; Transcription initiation factor TFIID component TAF4 domain containing protein.
         Os06t0649500-01 Os06g0649500; WD40 repeat-like domain containing protein.
         Os01t0510800-01 Os01g0510800; Histone-fold domain containing protein.
         Os05t0347000-01 Os05g0347000; TAFII55 protein conserved region domain containing protein.
         Os01t0648500-01 Os01g0648500; Similar to Transcription initiation factor TFIID subunit 7.
         Os03t0408500-01 Os03g0408500; Similar to Transcription initiation factor IID, 31kD subunit family protein, expressed.
         Os09t0431500-01 Os09g0431500; Similar to TATA box-binding protein associated factor 10.
         Os01t0846900-01 Os01g0846900; Histone-fold domain containing protein.
         Os01t0858500-01 Os01g0858500; Similar to Transcription initiation factor TFIID subunit 12 (Transcription initiation factor TFIID 20/15 kDa subunits) (TAFII-20/TAFII-15) (TAFII20/TAFII15).
         Os07t0203700-01 Os07g0203700; Cleavage and polyadenylation specificity factor, A subunit, C-terminal domain containing protein.
         Os02t0137400-01 Os02g0137400; Similar to Spliceosomal-like protein.
K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
K03129 TAF4; transcription initiation factor TFIID subunit 4 
K03129 TAF4; transcription initiation factor TFIID subunit 4 
K03130 TAF5; transcription initiation factor TFIID subunit 5 
K03131 TAF6; transcription initiation factor TFIID subunit 6 
K03132 TAF7; transcription initiation factor TFIID subunit 7 
K03132 TAF7; transcription initiation factor TFIID subunit 7 
K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
K03134 TAF10; transcription initiation factor TFIID subunit 10 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
K12830 SF3B3; splicing factor 3B subunit 3 
K12830 SF3B3; splicing factor 3B subunit 3 
       TIP60 complex
       HBO1 complex
       MOZ/MORF complex
       SAGA complex
         Os10t0415900-01 Os10g0415900; Similar to General control of amino-acid synthesis 5-like 2 (Fragment).
         Os03t0750800-01 Os03g0750800; Similar to Transcriptional adaptor (Fragment).
         Os05t0351500-01 Os05g0351500; Sgf11, transcriptional regulation family protein.
         Os12t0290600-01 Os12g0290600; Similar to Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC 3.1.3.16) (Neuronal tyrosine threonine phosphatase 1).
         Os06t0649500-01 Os06g0649500; WD40 repeat-like domain containing protein.
         Os01t0510800-01 Os01g0510800; Histone-fold domain containing protein.
         Os03t0408500-01 Os03g0408500; Similar to Transcription initiation factor IID, 31kD subunit family protein, expressed.
         Os09t0431500-01 Os09g0431500; Similar to TATA box-binding protein associated factor 10.
         Os01t0846900-01 Os01g0846900; Histone-fold domain containing protein.
         Os01t0858500-01 Os01g0858500; Similar to Transcription initiation factor TFIID subunit 12 (Transcription initiation factor TFIID 20/15 kDa subunits) (TAFII-20/TAFII-15) (TAFII20/TAFII15).
         Os04t0647300-01 Os04g0647300; Similar to H0811D08.10 protein.
         Os01t0920200-01 Os01g0920200; Similar to E(Y)2 homolog (DC6) (Enhancer of yellow 2 homolog).
K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
K11314 TADA2A; transcriptional adapter 2-alpha 
K11363 SGF11; SAGA-associated factor 11 
K11364 SGF29; SAGA-associated factor 29 
K03130 TAF5; transcription initiation factor TFIID subunit 5 
K03131 TAF6; transcription initiation factor TFIID subunit 6 
K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
K03134 TAF10; transcription initiation factor TFIID subunit 10 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
K11368 ENY2; enhancer of yellow 2 transcription factor 
       SLIK complex
         Os10t0415900-01 Os10g0415900; Similar to General control of amino-acid synthesis 5-like 2 (Fragment).
         Os03t0750800-01 Os03g0750800; Similar to Transcriptional adaptor (Fragment).
         Os05t0351500-01 Os05g0351500; Sgf11, transcriptional regulation family protein.
         Os12t0290600-01 Os12g0290600; Similar to Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC 3.1.3.16) (Neuronal tyrosine threonine phosphatase 1).
         Os06t0649500-01 Os06g0649500; WD40 repeat-like domain containing protein.
         Os01t0510800-01 Os01g0510800; Histone-fold domain containing protein.
         Os03t0408500-01 Os03g0408500; Similar to Transcription initiation factor IID, 31kD subunit family protein, expressed.
         Os09t0431500-01 Os09g0431500; Similar to TATA box-binding protein associated factor 10.
         Os01t0846900-01 Os01g0846900; Histone-fold domain containing protein.
         Os01t0858500-01 Os01g0858500; Similar to Transcription initiation factor TFIID subunit 12 (Transcription initiation factor TFIID 20/15 kDa subunits) (TAFII-20/TAFII-15) (TAFII20/TAFII15).
         Os04t0647300-01 Os04g0647300; Similar to H0811D08.10 protein.
K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
K11314 TADA2A; transcriptional adapter 2-alpha 
K11363 SGF11; SAGA-associated factor 11 
K11364 SGF29; SAGA-associated factor 29 
K03130 TAF5; transcription initiation factor TFIID subunit 5 
K03131 TAF6; transcription initiation factor TFIID subunit 6 
K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
K03134 TAF10; transcription initiation factor TFIID subunit 10 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
       ADA-HAT complex
       HAT-A2 complex
       HATB complex
       NSL complex
       MSL complex
       Elongator complex
       NuA3 complex
       NuA4 complex
       SAS complex
     HDACs (histone deacetylases)
     HDAC complexes
     HMTs (histone methyltransferases)
     HMT complexes
     Histone demethylases
     Polycomb group proteins
     Sir proteins
     Other histone modification proteins
   Chromosome condensation proteins
   Centromeric chromatin formation proteins
   Heterochromatin formation proteins
   Gene silencing
   Centrosome formation and ciliogenesis proteins
   Sister chromatid separation proteins
   Chromatin remodeling factors
 
 Prokaryotic type

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Last updated: July 2, 2020