JW0204 rnhA; ribonuclease HI, degrades RNA of DNA-RNA hybrids
       JW1944 dcm; DNA cytosine methylase
       JW3964 hupA; HU, DNA-binding transcriptional regulator, alpha subunit
       JW0430 hupB; HU, DNA-binding transcriptional regulator, beta subunit
       JW1702 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit
       JW0895 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit
       JW3679 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator
       JW4012 dnaB; replicative DNA helicase
       JW4325 dnaC; DNA biosynthesis protein
       JW3038 dnaG; DNA primase
       JW4020 ssb; Single-stranded DNA-binding protein
       JW0179 dnaE; DNA polymerase III alpha subunit
       JW3678 dnaN; DNA polymerase III, beta subunit
       JW4216 holC; DNA polymerase III, chi subunit
       JW0635 holA; DNA polymerase III, delta subunit
       JW1085 holB; DNA polymerase III, delta prime subunit
       JW0205 dnaQ; DNA polymerase III epsilon subunit
       JW0459 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits
       JW4334 holD; DNA polymerase III, psi subunit
       JW1831 holE; DNA polymerase III, theta subunit
       JW0178 rnhB; ribonuclease HII, degrades RNA of DNA-RNA hybrids
       JW3835 polA; fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease
       JW2403 ligA; DNA ligase, NAD(+)-dependent
       JW3622 ligB; DNA ligase, NAD(+)-dependent
       JW1602 tus; inhibitor of replication at Ter, DNA-binding protein
       JW3350 dam; DNA adenine methylase
       JW0674 seqA; regulatory protein for replication initiation
       JW5397 hda; ATPase regulatory factor involved in DnaA inactivation
       JW2225 gyrA; DNA gyrase (type II topoisomerase), subunit A
       JW5625 gyrB; DNA gyrase, subunit B
       JW2987 parC; DNA topoisomerase IV, subunit A
       JW2998 parE; DNA topoisomerase IV, subunit B
       JW1266 topA; DNA topoisomerase I, omega subunit
       JW1752 topB; DNA topoisomerase III

K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K02313 dnaA; chromosomal replication initiator protein
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02315 dnaC; DNA replication protein DnaC
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K10748 tus; DNA replication terminus site-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03645 seqA; negative modulator of initiation of replication
K10763 hda; DnaA-homolog protein
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03169 topB; DNA topoisomerase III [EC:5.6.2.1]

       JW1944 dcm; DNA cytosine methylase
       JW2551 rnc; RNase III
       JW1225 hns; global DNA-binding transcriptional dual regulator H-NS
       JW2644 stpA; DNA binding protein, nucleoid-associated
       JW3964 hupA; HU, DNA-binding transcriptional regulator, alpha subunit
       JW0430 hupB; HU, DNA-binding transcriptional regulator, beta subunit
       JW1702 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit
       JW0895 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit
       JW0985 cbpA; curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK
       JW0984 cbpM; modulator of CbpA co-chaperone
       JW4359 rob; DNA-binding transcriptional activator
       JW3679 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator
       JW3118 yraO; DnaA initiator-associating factor for replication initiation
       JW5970 yccV; DNA-binding protein, hemimethylated
       JW0797 dps; Fe-binding and storage protein
       JW3229 fis; global DNA-binding transcriptional dual regulator
       JW4130 hfq; HF-I, host factor for RNA phage Q beta replication
       JW2883 argP; DNA-binding transcriptional activator, replication initiation inhibitor
       JW0872 lrp; DNA-binding transcriptional dual regulator, leucine-binding
       JW2174 yejK; nucleotide associated protein
       JW0907 mukB; fused chromosome partitioning proteins
       JW0906 mukE; protein involved in chromosome partitioning
       JW0905 mukF; Involved in chromosome partioning, Ca2+ binding protein
       JW0092 ftsA; ATP-binding cell division protein involved in recruitment of FtsK to Z ring
       JW2718 ftsB; cell division protein
       JW3428 ftsE; predicted transporter subunit
       JW0082 ftsI; transpeptidase involved in septal peptidoglycan synthesis
       JW0873 ftsK; DNA-binding membrane protein required for chromosome resolution and partitioning
       JW0081 ftsL; membrane bound cell division protein at septum containing leucine zipper motif
       JW3904 ftsN; essential cell division protein
       JW0091 ftsQ; membrane anchored protein involved in growth of wall at septum
       JW0087 ftsW; integral membrane protein involved in stabilising FstZ ring during cell division
       JW3427 ftsX; predicted transporter subunit
       JW0093 ftsZ; GTP-binding tubulin-like cell division protein
       JW2404 zipA; cell division protein involved in Z ring assembly
       JW2878 zapA; protein that localizes to the cytokinetic ring
       JW3899 yiiU; conserved hypothetical protein
       JW5125 ycbW; hypothetical protein
       JW0099 yacF; conserved hypothetical protein
       JW3201 yhcM; conserved hypothetical protein with nucleoside triphosphate hydrolase domain
       JW5745 ytfB; predicted cell envelope opacity-associated protein
       JW2428 amiA; N-acetylmuramoyl-l-alanine amidase I
       JW4127 amiB; N-acetylmuramoyl-l-alanine amidase II
       JW5449 amiC; N-acetylmuramoyl-L-alanine amidase
       JW0452 acrA; multidrug efflux system
       JW1165 minC; cell division inhibitor
       JW1164 minD; membrane ATPase of the MinC-MinD-MinE system
       JW1163 minE; cell division topological specificity factor
       JW0941 sulA; SOS cell division inhibitor
       JW5641 ttk; division inhibitor
       JW0674 seqA; regulatory protein for replication initiation
       JW3220 mreB; cell wall structural complex MreBCD, actin-like component MreB
       JW3219 mreC; cell wall structural complex MreBCD transmembrane component MreC
       JW3218 mreD; cell wall structural complex MreBCD transmembrane component MreD
       JW0629 mrdB; cell wall shape-determining protein
       JW2987 parC; DNA topoisomerase IV, subunit A
       JW2998 parE; DNA topoisomerase IV, subunit B
       JW3719 gidA; glucose-inhibited cell-division protein
       JW3718 gidB; methyltransferase, glucose-inhibited cell-division protein
       JW3784 xerC; site-specific tyrosine recombinase
       JW2862 xerD; site-specific tyrosine recombinase
       JW2100 mrp; antiporter inner membrane protein
       JW3324 fic; stationary-phase protein, cell division
       JW5930 yihA; GTP-binding protein

K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K03685 rnc; ribonuclease III [EC:3.1.26.3]
K03746 hns; DNA-binding protein H-NS
K11685 stpA; DNA-binding protein StpA
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K05516 cbpA; curved DNA-binding protein
K18997 cbpM; chaperone modulatory protein CbpM
K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
K02313 dnaA; chromosomal replication initiator protein
K12961 diaA; DnaA initiator-associating protein
K11940 hspQ; heat shock protein HspQ
K04047 dps; starvation-inducible DNA-binding protein
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K03666 hfq; host factor-I protein
K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
K06899 ndpA; nucleoid-associated protein
K03632 mukB; chromosome partition protein MukB
K03804 mukE; chromosome partition protein MukE
K03633 mukF; chromosome partition protein MukF
K03590 ftsA; cell division protein FtsA
K05589 ftsB; cell division protein FtsB
K09812 ftsE; cell division transport system ATP-binding protein
K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
K03586 ftsL; cell division protein FtsL
K03591 ftsN; cell division protein FtsN
K03589 ftsQ; cell division protein FtsQ
K03588 ftsW; cell division protein FtsW
K09811 ftsX; cell division transport system permease protein
K03531 ftsZ; cell division protein FtsZ
K03528 zipA; cell division protein ZipA
K09888 zapA; cell division protein ZapA
K09892 zapB; cell division protein ZapB
K18657 zapC; cell division protein ZapC
K18778 zapD; cell division protein ZapD
K06916 zapE; cell division protein ZapE
K07269 ytfB; cell division protein YtfB
K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
K03585 acrA; membrane fusion protein, multidrug efflux system
K03610 minC; septum site-determining protein MinC
K03609 minD; septum site-determining protein MinD
K03608 minE; cell division topological specificity factor
K13053 sulA; cell division inhibitor SulA
K05501 slmA; TetR/AcrR family transcriptional regulator
K03645 seqA; negative modulator of initiation of replication
K03569 mreB; rod shape-determining protein MreB and related proteins
K03570 mreC; rod shape-determining protein MreC
K03571 mreD; rod shape-determining protein MreD
K05837 rodA; rod shape determining protein RodA
K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
K03733 xerC; integrase/recombinase XerC
K04763 xerD; integrase/recombinase XerD
K03593 mrp; ATP-binding protein involved in chromosome partitioning
K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
K03978 engB; GTP-binding protein

       JW2725 ygbT; conserved hypothetical protein
       JW5438 ygbF; hypothetical protein
       JW2731 ygcB; conserved hypothetical protein, member of DEAD box family
       JW2730 ygcL; hypothetical protein
       JW2729 ygcK; hypothetical protein
       JW2728 ygcJ; hypothetical protein
       JW5844 ygcI; hypothetical protein
       JW2726 ygcH; hypothetical protein
       JW4313 hsdR; endonuclease R
       JW4311 hsdS; specificity determinant for hsdM and hsdR
       JW4312 hsdM; DNA methylase M
       JW3350 dam; DNA adenine methylase
       JW5543 yhdJ; predicted methyltransferase
       JW1944 dcm; DNA cytosine methylase
       JW1145 mcrA; 5-methylcytosine-specific restriction endonuclease B
       JW5871 mcrB; 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB
       JW5789 mcrC; 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC
       JW4314 mrr; methylated adenine and cytosine restriction protein
       JW3526 hokA; toxic polypeptide, small
       JW5225 hokB; toxic polypeptide, small
       JW5879 mokC; regulatory protein for HokC, overlaps CDS of hokC
       JW5002 hokC; toxic membrane protein, small
       JW1554 hokD; small toxic polypeptide
       JW5084 hokE; toxic polypeptide, small
       JWR0235 sokB; regulatory antisense sRNA
       JWR0224 sokC; regulatory antisense RNA
       JW4310 yjiW; conserved hypothetical protein
       JW5957 ldrA; toxic polypeptide, small
       JW5959 ldrC; toxic polypeptide, small
       JW5958 ldrB; toxic polypeptide, small
       JW5966 ldrD; toxic polypeptide, small
       JWR0229 rdlA; regulatory antisense RNA
       JWR0241 ryeC; small RNA
       JWR0242 ryeD; small RNA
       JWR0250 rygC; small RNA
       JWR0251 rygD; small RNA
       JW5208 lar; restriction alleviation protein
       JW1341 ydaC; hypothetical protein
       JW2753 chpA; toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease
       JW2754 chpR; antitoxin of the ChpA-ChpR toxin-antitoxin system
       JW4184 chpB; toxin of the ChpB-ChpS toxin-antitoxin system
       JW5750 chpS; antitoxin of the ChpB-ChpS toxin-antitoxin system
       JW3099 yhaV; conserved hypothetical protein
       JW3098 sohA; predicted regulator
       JW1555 relE; toxin of the RelE-RelB toxin-antitoxin system
       JW1556 relB; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor
       JW0215 yafQ; predicted toxin of the YafQ-DinJ toxin-antitoxin system
       JW0216 dinJ; predicted antitoxin of YafQ-DinJ toxin-antitoxin system
       JW5331 yoeB; toxin of the YoeB-YefM toxin-antitoxin system
       JW5835 yefM; antitoxin of the YoeB-YefM toxin-antitoxin system
       JW1500 hipA; regulator with hipB
       JW1501 hipB; DNA-binding transcriptional regulator
       JW5230 yncN; hypothetical protein
       JW1433 ydcQ; predicted DNA-binding transcriptional regulator
       JW0223 yafO; predicted toxin of the YafO-YafN toxin-antitoxin system
       JW0222 yafN; predicted antitoxin of the YafO-YafN toxin-antitoxin system
       JW0449 hha; modulator of gene expression, with H-NS
       JW0450 ybaJ; hypothetical protein
       JW1299 pspC; transcriptional activator
       JW1298 pspB; transcriptional regulator of psp operon
       JW3054 ygjN; conserved hypothetical protein
       JW3053 ygjM; predicted DNA-binding transcriptional regulator
       JW0472 ybaQ; predicted DNA-binding transcriptional regulator
       JW5908 yddM; predicted DNA-binding transcriptional regulator
       JW2990 ygiU; predicted cyanide hydratase
       JW2989 ygiT; predicted DNA-binding transcriptional regulator
       JW5756 yjgK; conserved hypothetical protein
       JW5106 ybiM; hypothetical protein
       JW5152 yceP; hypothetical protein
       JW0820 yliH; conserved hypothetical protein
       JW1098 ycfR; hypothetical protein
       JW0093 ftsZ; GTP-binding tubulin-like cell division protein
       JW3220 mreB; cell wall structural complex MreBCD, actin-like component MreB
       JW2987 parC; DNA topoisomerase IV, subunit A
       JW2998 parE; DNA topoisomerase IV, subunit B
       JW2395 gltX; glutamyl-tRNA synthetase
       JW1987 yeeV; toxin of the YeeV-YeeU toxin-antitoxin system
       JW0234 ykfI; toxin of the YkfI-YafW toxin-antitoxin system
       JW2627 ypjF; toxin of the YpjF-YfjZ toxin-antitoxin system
       JW1986 yeeU; antitoxin of the YeeV-YeeU toxin-antitoxin system
       JW0235 yafW; antitoxin of the YkfI-YafW toxin-antitoxin system
       JW2626 yfjZ; antitoxin of the YpjF-YfjZ toxin-antitoxin system
       JW0259 yagB; conserved hypothetical protein
       JW2864 ygfX; hypothetical protein
       JW2865 ygfY; conserved hypothetical protein
       JW5732 yjdO; hypothetical protein
       JW4089 yjdK; hypothetical protein
       JW2514 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent

K15342 cas1; CRISP-associated protein Cas1
K09951 cas2; CRISPR-associated protein Cas2
K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
K19123 casA; CRISPR system Cascade subunit CasA
K19046 casB; CRISPR system Cascade subunit CasB
K19124 casC; CRISPR system Cascade subunit CasC
K19125 casD; CRISPR system Cascade subunit CasD
K19126 casE; CRISPR system Cascade subunit CasE
K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
K07448 mrr; restriction system protein
K18920 hokA; protein HokA
K18921 hokB; protein HokB
K18919 hokC_D; protein HokC/D
K18919 hokC_D; protein HokC/D
K18919 hokC_D; protein HokC/D
K18922 hokE; protein HokE
K18870 sokB; sRNA antisense regulator of MokB and HokB protein
K18871 sokC; sRNA antisense regulator of MokC and HokC protein
K19048 symE; toxic protein SymE
K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D
K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D
K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D
K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D
K18863 rdlA_B_C_D; sRNA antisense regulator of LdrA/B/C/D protein
K18864 sibA; sRNA antisense regulator of IbsA protein
K18865 sibB; sRNA antisense regulator of IbsB protein
K18867 sibC; sRNA antisense regulator of IbsC protein
K18868 sibD; sRNA antisense regulator of IbsD protein
K19779 ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]
K19780 ralA; antisense regulator of RalR protein
K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
K07172 mazE; antitoxin MazE
K18841 chpB; mRNA interferase ChpB [EC:3.1.-.-]
K18842 chpS; antitoxin ChpS
K19155 yhaV; toxin YhaV [EC:3.1.-.-]
K19156 prlF; antitoxin PrlF
K06218 relE; mRNA interferase RelE/StbE
K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
K07473 dinJ; DNA-damage-inducible protein J
K19158 yoeB; toxin YoeB [EC:3.1.-.-]
K19159 yefM; antitoxin YefM
K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
K07339 hicA; mRNA interferase HicA [EC:3.1.-.-]
K18843 hicB; antitoxin HicB
K19160 yafO; mRNA interferase YafO [EC:3.1.-.-]
K19161 yafN; antitoxin YafN
K05839 hha; haemolysin expression modulating protein
K19162 tomB; hha toxicity modulator TomB
K03973 pspC; phage shock protein C
K03970 pspB; phage shock protein B
K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
K21498 higA-1; antitoxin HigA-1
K21498 higA-1; antitoxin HigA-1
K13651 mqsR; motility quorum-sensing regulator / GCU-specific mRNA interferase toxin
K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
K19334 tabA; biofilm protein TabA
K13650 mcbA; MqsR-controlled colanic acid and biofilm protein A
K12148 bssS; biofilm regulator BssS
K19688 bssR; biofilm regulator BssR
K12151 bhsA; multiple stress resistance protein BhsA
K03531 ftsZ; cell division protein FtsZ
K03569 mreB; rod shape-determining protein MreB and related proteins
K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
K19168 cptA; toxin CptA
K09159 cptB; antitoxin CptB
K18839 ghoT; toxin GhoT
K18840 ghoS; antitoxin GhoS
K04487 iscS; cysteine desulfurase [EC:2.8.1.7]