EcHS_A1451 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase
       EcHS_A0755 phrB; deoxyribodipyrimidine photolyase
       EcHS_A2737 ung; uracil-DNA glycosylase
       EcHS_A3122 mutY; A/G-specific adenine glycosylase
       EcHS_A1709 nth; endonuclease III
       EcHS_A0105 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase
       EcHS_A3849 dut; dUTP diphosphatase
       EcHS_A2352 ada; regulatory protein Ada
       EcHS_A2351 alkB; alkylated DNA repair protein AlkB
       EcHS_A3249 mug; G/U mismatch-specific DNA glycosylase
       EcHS_A2209 alkA; DNA-3-methyladenine glycosylase 2
       EcHS_A3749 tag; DNA-3-methyladenine glycosylase I
       EcHS_A3844 mutM; formamidopyrimidine-DNA glycosylase
       EcHS_A0762 nei; endonuclease VIII
       EcHS_A1833 xth; exodeoxyribonuclease III
       EcHS_A2295 nfo; endonuclease 4
       EcHS_A4232 nfi; endonuclease V
       EcHS_A3051 recJ; single-stranded-DNA-specific exonuclease RecJ
       EcHS_A3858 ligB; NAD(+)-dependent DNA ligase LigB
       EcHS_A2546 ligA; DNA ligase, NAD-dependent
       EcHS_A4088 polA; DNA polymerase I
       EcHS_A4300 uvrA; excinuclease ABC, A subunit
       EcHS_A0833 uvrB; excinuclease ABC, B subunit
       EcHS_A2011 uvrC; excinuclease ABC, C subunit
       EcHS_A1823 cho; excinuclease cho
       EcHS_A4038 uvrD; DNA helicase II
       EcHS_A4220 rpoB; DNA-directed RNA polymerase, beta subunit
       EcHS_A4221 rpoC; DNA-directed RNA polymerase, beta' subunit
       EcHS_A3489 rpoA; DNA-directed RNA polymerase, alpha subunit
       EcHS_A3860 rpoZ; DNA-directed RNA polymerase, omega subunit
       EcHS_A1237 mfd; transcription-repair coupling factor
       EcHS_A2871 mutS; DNA mismatch repair protein MutS
       EcHS_A4412 mutL; DNA mismatch repair protein MutL
       EcHS_A2978 mutH; DNA mismatch repair endonuclease MutH
       EcHS_A2149 sbcB; exodeoxyribonuclease I
       EcHS_A2660 xseA; exodeoxyribonuclease VII, large subunit
       EcHS_A0493 xseB; exodeoxyribonuclease VII, small subunit
       EcHS_A1935 exoX; exodeoxyribonuclease X
       EcHS_A0186 dnaE; DNA polymerase III, alpha subunit
       EcHS_A3914 dnaN; DNA polymerase III, beta subunit
       EcHS_A4515 holC; DNA polymerase III, chi subunit
       EcHS_A0692 holA; DNA polymerase III, delta subunit
       EcHS_A1221 holB; DNA polymerase III, delta' subunit
       EcHS_A0218 dnaQ; DNA polymerase III, epsilon subunit
       EcHS_A0547 dnaX; DNA polymerase III, tau and gamma subunits
       EcHS_A4606 holD; DNA polymerase III, psi subunit
       EcHS_A1933 holE; DNA polymerase III, theta subunit
       EcHS_A4301 ssb; single-stranded DNA-binding protein
       EcHS_A3583 dam; DNA adenine methylase
       EcHS_A0917 retron EC67 DNA adenine methylase
       EcHS_A2062 vsr; very short patch repair protein
       EcHS_A2966 recB; exodeoxyribonuclease V, beta subunit
       EcHS_A2968 recC; exodeoxyribonuclease V, gamma subunit
       EcHS_A2965 recD; exodeoxyribonuclease V, alpha subunit
       EcHS_A2835 recA; protein RecA
       EcHS_A1954 ruvA; Holliday junction DNA helicase RuvA
       EcHS_A1953 ruvB; Holliday junction DNA helicase RuvB
       EcHS_A1956 ruvC; crossover junction endodeoxyribonuclease RuvC
       EcHS_A0300 rusA; crossover junction endodeoxyribonuclease RusA
       EcHS_A4167 priA; primosomal protein N'
       EcHS_A4445 priB; primosomal replication protein N
       EcHS_A0544 priC; primosomal replication protein N''
       EcHS_A4594 dnaT; primosomal protein 1
       EcHS_A0464 sbcC; nuclease SbcCD, C subunit
       EcHS_A0466 sbcD; nuclease SbcCD, D subunit
       EcHS_A4624 radA; DNA repair protein RadA
       EcHS_A3913 recF; DNA replication and repair protein RecF
       EcHS_A3863 recG; ATP-dependent DNA helicase RecG
       EcHS_A2720 recO; DNA repair protein RecO
       EcHS_A0549 recR; recombination protein RecR
       EcHS_A2774 recN; DNA repair protein RecN
       EcHS_A0461 putative recombination-associated exonuclease RdgC
       EcHS_A2894 cas1; CRISPR-associated protein Cas1
       EcHS_A2322 putative helicase
       EcHS_A4519 conserved hypothetical protein
       EcHS_A2371 gyrA; DNA gyrase, A subunit
       EcHS_A3912 gyrB; DNA gyrase, B subunit
       EcHS_A1383 topA; DNA topoisomerase I
       EcHS_A4234 hupA; DNA-binding protein HU-alpha
       EcHS_A0517 hupB; DNA-binding protein HU-beta
       EcHS_A0283 RecT family protein
       EcHS_A3454 fis; DNA-binding protein Fis
       EcHS_A1792 ihfA; integration host factor, alpha subunit
       EcHS_A1018 ihfB; integration host factor, beta subunit
       EcHS_A4046 recQ; ATP-dependent DNA helicase RecQ
       EcHS_A1345 H-NS histone family protein
       EcHS_A0260 dinB; DNA polymerase IV
       EcHS_A1287 umuC; protein UmuC
       EcHS_A1286 umuD; protein UmuD
       EcHS_A0328 conserved hypothetical protein
       EcHS_A2076 hypothetical protein
       EcHS_A4283 lexA; LexA repressor
       EcHS_A0064 polB; DNA polymerase II
       EcHS_A1184 dinI; DNA-damage-inducible protein I
       EcHS_A2781 DinI family protein
       EcHS_A2834 recX; regulatory protein RecX
       EcHS_A3608 putative transposase, YhgA
       EcHS_A0136 conserved hypothetical protein
       EcHS_A4566 conserved hypothetical protein
       EcHS_A2386 conserved hypothetical protein
       EcHS_A3994 rep; ATP-dependent DNA helicase Rep
       EcHS_A1071 helD; helicase IV
       EcHS_A0853 putative ATP-dependent helicase DinG
       EcHS_A1896 conserved hypothetical protein
       EcHS_A1730 lhr; DEAD/DEAH box helicase family protein Lhr
       EcHS_A2811 nrdE; ribonucleoside-diphosphate reductase, alpha subunit
       EcHS_A2374 nrdA; ribonucleoside-diphosphate reductase, alpha subunit
       EcHS_A2812 nrdF; ribonucleoside-diphosphate reductase, beta subunit
       EcHS_A2375 nrdB; ribonucleoside-diphosphate reductase, beta subunit

K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K12149 dinI; DNA-damage-inducible protein I
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K01157 rpnA; recombination-promoting nuclease RpnA [EC:3.1.21.-]
K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-]
K24089 rpnD; recombination-promoting nuclease RpnD [EC:3.1.21.-]
K24090 rpnE; recombination-promoting nuclease RpnE
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]