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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:heq03030]
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 HPF32_1436 dnaQ; DNA polymerase III subunit epsilon
HPF32_1347 dnaE; DNA polymerase III subunit alpha
HPF32_0684 dnaX; DNA polymerase III subunits gamma and tau
HPF32_1160 holB; DNA polymerase III subunit delta'
HPF32_1177 DNA polymerase III subunit delta
HPF32_0482 dnaN; DNA polymerase III subunit beta
HPF32_0039 dnaB; replicative DNA helicase
HPF32_0010 dnaG; DNA primase
HPF32_1175 ssb; single-strand DNA-binding protein
HPF32_0658 rnhA; ribonuclease H
HPF32_1249 rnhB; ribonuclease HII
HPF32_0589 ligA; NAD-dependent DNA ligase LigA
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K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03410 Base excision repair [PATH:heq03410]
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03420 Nucleotide excision repair [PATH:heq03420]
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03430 Mismatch repair [PATH:heq03430]
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HPF32_0599 mutS; recombination and DNA strand exchange inhibitor protein
HPF32_1365 rep; DNA helicase II
HPF32_0443 rep; rep helicase, single-stranded DNA-dependent ATPase
HPF32_0268 xseA; exodeoxyribonuclease VII large subunit
HPF32_1369 hypothetical protein
HPF32_0961 recJ; single-stranded-DNA specific exonuclease
HPF32_1175 ssb; single-strand DNA-binding protein
HPF32_1347 dnaE; DNA polymerase III subunit alpha
HPF32_0482 dnaN; DNA polymerase III subunit beta
HPF32_0684 dnaX; DNA polymerase III subunits gamma and tau
HPF32_1177 DNA polymerase III subunit delta
HPF32_1160 holB; DNA polymerase III subunit delta'
HPF32_1436 dnaQ; DNA polymerase III subunit epsilon
HPF32_0589 ligA; NAD-dependent DNA ligase LigA
HPF32_1387 Type II adenine specific DNA methyltransferase
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K07456 mutS2; DNA mismatch repair protein MutS2
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
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03440 Homologous recombination [PATH:heq03440]
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HPF32_0961 recJ; single-stranded-DNA specific exonuclease
HPF32_1175 ssb; single-strand DNA-binding protein
HPF32_0431 recR; recombination protein RecR
HPF32_0162 recA; recombinase A
HPF32_0466 ruvA; Holliday junction DNA helicase motor protein
HPF32_0920 ruvB; Holliday junction DNA helicase B
HPF32_0843 ruvC; Holliday junction resolvase
HPF32_1409 recG; DNA recombinase
HPF32_1347 dnaE; DNA polymerase III subunit alpha
HPF32_0482 dnaN; DNA polymerase III subunit beta
HPF32_0684 dnaX; DNA polymerase III subunits gamma and tau
HPF32_1177 DNA polymerase III subunit delta
HPF32_1160 holB; DNA polymerase III subunit delta'
HPF32_1436 dnaQ; DNA polymerase III subunit epsilon
HPF32_0337 priA; primosome assembly protein PriA
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:heq03000]
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03021 Transcription machinery [BR:heq03021]
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03019 Messenger RNA biogenesis [BR:heq03019]
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03041 Spliceosome
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03011 Ribosome [BR:heq03011]
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03009 Ribosome biogenesis [BR:heq03009]
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03016 Transfer RNA biogenesis [BR:heq03016]
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03012 Translation factors [BR:heq03012]
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03110 Chaperones and folding catalysts [BR:heq03110]
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04131 Membrane trafficking [BR:heq04131]
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04121 Ubiquitin system
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03051 Proteasome [BR:heq03051]
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03032 DNA replication proteins [BR:heq03032]
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HPF32_0658 rnhA; ribonuclease H
HPF32_1057 Type II DNA modification enzyme
HPF32_0816 Type II modification enzyme
HPF32_0953 DNA-cytosine methyltransferase
HPF32_0850 Type II DNA modification enzyme
HPF32_0060 ddeM; cytosine specific DNA methyltransferase
HPF32_0803 dna-binding protein hu
HPF32_1414 dnaA; chromosomal replication initiation protein
HPF32_0039 dnaB; replicative DNA helicase
HPF32_0010 dnaG; DNA primase
HPF32_1175 ssb; single-strand DNA-binding protein
HPF32_1347 dnaE; DNA polymerase III subunit alpha
HPF32_0482 dnaN; DNA polymerase III subunit beta
HPF32_1177 DNA polymerase III subunit delta
HPF32_1160 holB; DNA polymerase III subunit delta'
HPF32_1436 dnaQ; DNA polymerase III subunit epsilon
HPF32_0684 dnaX; DNA polymerase III subunits gamma and tau
HPF32_1249 rnhB; ribonuclease HII
HPF32_0589 ligA; NAD-dependent DNA ligase LigA
HPF32_1387 Type II adenine specific DNA methyltransferase
HPF32_0624 gyrA; DNA gyrase subunit A
HPF32_0483 gyrB; DNA gyrase subunit B
HPF32_0127 topA; DNA topoisomerase I
HPF32_0999 topA_3; topoisomerase I
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K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K03530 hupB; DNA-binding protein HU-beta
K02313 dnaA; chromosomal replication initiator protein
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
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03036 Chromosome and associated proteins [BR:heq03036]
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03400 DNA repair and recombination proteins [BR:heq03400]
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HPF32_0645 ogt; methylated-DNA--protein-cysteine methyltransferase
HPF32_0054 ung; uracil-DNA glycosylase
HPF32_0150 mutY; A/G-specific adenine glycosylase
HPF32_0560 nth; endonuclease III
HPF32_0831 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
HPF32_0669 hypothetical protein
HPF32_1412 exoA; exodeoxyribonuclease
HPF32_0961 recJ; single-stranded-DNA specific exonuclease
HPF32_0589 ligA; NAD-dependent DNA ligase LigA
HPF32_0621 uvrA; excinuclease ABC subunit A
HPF32_1051 uvrB; excinuclease ABC subunit B
HPF32_0789 uvrC; excinuclease ABC subunit C
HPF32_1365 rep; DNA helicase II
HPF32_0443 rep; rep helicase, single-stranded DNA-dependent ATPase
HPF32_1129 rpoB; DNA-directed RNA polymerase subunit beta/beta'
HPF32_1219 rpoA; DNA-directed RNA polymerase subunit alpha
HPF32_0745 rpoZ; DNA-directed RNA polymerase subunit omega
HPF32_1457 mfd; transcription-repair coupling factor
HPF32_0599 mutS; recombination and DNA strand exchange inhibitor protein
HPF32_0268 xseA; exodeoxyribonuclease VII large subunit
HPF32_1369 hypothetical protein
HPF32_1347 dnaE; DNA polymerase III subunit alpha
HPF32_0482 dnaN; DNA polymerase III subunit beta
HPF32_1177 DNA polymerase III subunit delta
HPF32_1160 holB; DNA polymerase III subunit delta'
HPF32_1436 dnaQ; DNA polymerase III subunit epsilon
HPF32_0684 dnaX; DNA polymerase III subunits gamma and tau
HPF32_1175 ssb; single-strand DNA-binding protein
HPF32_1387 Type II adenine specific DNA methyltransferase
HPF32_0162 recA; recombinase A
HPF32_0466 ruvA; Holliday junction DNA helicase motor protein
HPF32_0920 ruvB; Holliday junction DNA helicase B
HPF32_0843 ruvC; Holliday junction resolvase
HPF32_0337 priA; primosome assembly protein PriA
HPF32_0233 radA; DNA repair protein RadA
HPF32_1409 recG; DNA recombinase
HPF32_0431 recR; recombination protein RecR
HPF32_1430 recN; DNA repair protein
HPF32_0624 gyrA; DNA gyrase subunit A
HPF32_0483 gyrB; DNA gyrase subunit B
HPF32_0127 topA; DNA topoisomerase I
HPF32_0999 topA_3; topoisomerase I
HPF32_0803 dna-binding protein hu
HPF32_0642 nrdA; ribonucleotide-diphosphate reductase subunit alpha
HPF32_1027 nrdF; ribonucleotide-diphosphate reductase subunit beta
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K13797 rpoBC; DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K07456 mutS2; DNA mismatch repair protein MutS2
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:heq03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Helicobacter pylori F32