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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:hor03030]
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03410 Base excision repair [PATH:hor03410]
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03420 Nucleotide excision repair [PATH:hor03420]
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03430 Mismatch repair [PATH:hor03430]
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 Hore_11670 DNA mismatch repair protein MutS
Hore_05680 MutS2 family protein
Hore_11660 DNA mismatch repair protein MutL
Hore_02290 ATP-dependent DNA helicase PcrA
Hore_06490 exodeoxyribonuclease VII, large subunit
Hore_06500 exodeoxyribonuclease VII, small subunit
Hore_12210 single-stranded-DNA-specific exonuclease RecJ
Hore_23350 single-strand binding protein
Hore_03140 DNA polymerase III catalytic subunit, DnaE type
Hore_07800 DNA polymerase III, alpha subunit
Hore_00020 DNA polymerase III, beta subunit
Hore_20790 DNA polymerase III, subunits gamma and tau
Hore_12890 DNA polymerase III, delta subunit
Hore_20360 DNA polymerase III, delta prime subunit
Hore_02300 DNA ligase, NAD-dependent
Hore_04430 DNA adenine methylase
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K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
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03440 Homologous recombination [PATH:hor03440]
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03450 Non-homologous end-joining [PATH:hor03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:hor03000]
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03021 Transcription machinery [BR:hor03021]
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03019 Messenger RNA biogenesis [BR:hor03019]
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03041 Spliceosome
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03011 Ribosome [BR:hor03011]
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03009 Ribosome biogenesis [BR:hor03009]
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03016 Transfer RNA biogenesis [BR:hor03016]
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03012 Translation factors [BR:hor03012]
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03110 Chaperones and folding catalysts [BR:hor03110]
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04131 Membrane trafficking [BR:hor04131]
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04121 Ubiquitin system
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03051 Proteasome
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03032 DNA replication proteins [BR:hor03032]
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Hore_08950 Ribonuclease H
Hore_10570 histone family protein DNA-binding protein
Hore_00010 chromosomal replication initiator protein DnaA
Hore_23140 DnaB domain protein helicase domain protein
Hore_23130 AAA ATPase
Hore_12410 DNA primase
Hore_23350 single-strand binding protein
Hore_03140 DNA polymerase III catalytic subunit, DnaE type
Hore_07800 DNA polymerase III, alpha subunit
Hore_00020 DNA polymerase III, beta subunit
Hore_12890 DNA polymerase III, delta subunit
Hore_20360 DNA polymerase III, delta prime subunit
Hore_20790 DNA polymerase III, subunits gamma and tau
Hore_07370 Ribonuclease H
Hore_04860 DNA polymerase I
Hore_02300 DNA ligase, NAD-dependent
Hore_04430 DNA adenine methylase
Hore_00070 DNA gyrase, A subunit
Hore_11750 DNA gyrase subunit A
Hore_00060 DNA gyrase, B subunit
Hore_11740 DNA gyrase, B subunit
Hore_07540 DNA topoisomerase I
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K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03530 hupB; DNA-binding protein HU-beta
K02313 dnaA; chromosomal replication initiator protein
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02315 dnaC; DNA replication protein DnaC
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
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03036 Chromosome and associated proteins [BR:hor03036]
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03400 DNA repair and recombination proteins [BR:hor03400]
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Hore_08160 methylated-DNA--protein-cysteine methyltransferase
Hore_04990 Deoxyribodipyrimidine photo-lyase
Hore_10790 endonuclease III
Hore_08300 NUDIX hydrolase
Hore_07970 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Hore_11480 Uracil-DNA glycosylase
Hore_13850 uracil-DNA glycosylase
Hore_04870 formamidopyrimidine-DNA glycosylase
Hore_07910 apurinic endonuclease Apn1
Hore_12210 single-stranded-DNA-specific exonuclease RecJ
Hore_02300 DNA ligase, NAD-dependent
Hore_04860 DNA polymerase I
Hore_16220 excinuclease ABC, A subunit
Hore_16230 excinuclease ABC, B subunit
Hore_16210 excinuclease ABC, C subunit
Hore_02290 ATP-dependent DNA helicase PcrA
Hore_01090 DNA-directed RNA polymerase, beta subunit
Hore_01100 DNA-directed RNA polymerase, beta' subunit
Hore_01450 DNA-directed RNA polymerase, alpha subunit
Hore_09820 DNA-directed RNA polymerase, omega subunit
Hore_21200 transcription-repair coupling factor
Hore_11670 DNA mismatch repair protein MutS
Hore_05680 MutS2 family protein
Hore_11660 DNA mismatch repair protein MutL
Hore_06490 exodeoxyribonuclease VII, large subunit
Hore_06500 exodeoxyribonuclease VII, small subunit
Hore_03140 DNA polymerase III catalytic subunit, DnaE type
Hore_07800 DNA polymerase III, alpha subunit
Hore_00020 DNA polymerase III, beta subunit
Hore_12890 DNA polymerase III, delta subunit
Hore_20360 DNA polymerase III, delta prime subunit
Hore_20790 DNA polymerase III, subunits gamma and tau
Hore_23350 single-strand binding protein
Hore_04430 DNA adenine methylase
Hore_11890 recA protein
Hore_12320 Holliday junction DNA helicase RuvA
Hore_12310 Holliday junction DNA helicase RuvB
Hore_12330 crossover junction endodeoxyribonuclease RuvC
Hore_09880 primosomal protein N'
Hore_04030 Exodeoxyribonuclease I subunit C
Hore_04020 Exodeoxyribonuclease I subunit D
Hore_00880 DNA repair protein RadA
Hore_00040 DNA replication and repair protein RecF
Hore_10120 ATP-dependent DNA helicase RecG
Hore_12480 DNA repair protein RecO
Hore_20770 recombination protein RecR
Hore_06570 DNA repair protein RecN
Hore_15210 CRISPR-associated protein Cas1
Hore_03400 Ku family containing protein
Hore_03410 DNA polymerase LigD polymerase domain protein
Hore_03420 ATP dependent DNA ligase
Hore_00070 DNA gyrase, A subunit
Hore_11750 DNA gyrase subunit A
Hore_00060 DNA gyrase, B subunit
Hore_11740 DNA gyrase, B subunit
Hore_07540 DNA topoisomerase I
Hore_10570 histone family protein DNA-binding protein
Hore_08990 DNA-directed DNA polymerase
Hore_13250 DNA-directed DNA polymerase
Hore_11470 SOS-response transcriptional repressor, LexA
Hore_20950 putative prophage repressor
Hore_11880 regulatory protein RecX
Hore_05670 DNA polymerase X family protein
Hore_07920 helicase c2
Hore_22200 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
Hore_07860 phosphoesterase RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K15342 cas1; CRISP-associated protein Cas1
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:hor03029]
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09183 Protein families: signaling and cellular processes
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02000 Transporters [BR:hor02000]
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02044 Secretion system [BR:hor02044]
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02042 Bacterial toxins [BR:hor02042]
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02022 Two-component system [BR:hor02022]
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02035 Bacterial motility proteins [BR:hor02035]
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03037 Cilium and associated proteins
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04812 Cytoskeleton proteins [BR:hor04812]
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04147 Exosome [BR:hor04147]
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02048 Prokaryotic defense system [BR:hor02048]
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Hore_15210 CRISPR-associated protein Cas1
Hore_15200 CRISPR-associated protein Cas2
Hore_15220 CRISPR-associated helicase Cas3
Hore_15190 CRISPR-associated protein Cas4
Hore_15250 putative glutamate--cysteine ligase/putative amino acid ligase/CRISPR-associated protein, TM1802 family
Hore_15240 CRISPR-associated protein, Csh2 family
Hore_15230 CRISPR-associated protein Cas5
Hore_15160 CRISPR-associated RAMP protein, Cmr1 family
Hore_15150 CRISPR-associated protein, Crm2 family
Hore_15140 CRISPR-associated protein, Cmr3 family
Hore_15130 CRISPR-associated RAMP protein, Cmr4 family
Hore_15120 CRISPR-associated protein, Cmr5 family
Hore_15110 CRISPR-associated RAMP protein, Cmr6 family
Hore_20230 EcoEI R domain protein
Hore_04460 type I site-specific deoxyribonuclease, HsdR family
Hore_04450 restriction modification system DNA specificity domain protein
Hore_20210 restriction modification system DNA specificity domain protein
Hore_20220 N-6 DNA methylase
Hore_04440 type I restriction-modification system, M subunit
Hore_04430 DNA adenine methylase
Hore_01740 transcriptional modulator of MazE/toxin, MazF
Hore_00220 transcriptional regulator/antitoxin, MazE
Hore_01730 putative transcriptional regulator, CopG family
Hore_21470 phage shock protein C, PspC
Hore_13720 addiction module toxin, RelE/StbE family
Hore_00210 death-on-curing family protein
Hore_20190 plasmid maintenance system antidote protein, XRE family
Hore_09130 cell division protein FtsZ
Hore_14240 cell shape determining protein, MreB/Mrl family
Hore_17730 cell shape determining protein, MreB/Mrl family
Hore_22050 aminotransferase class V
Hore_08880 aminotransferase class V
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K15342 cas1; CRISP-associated protein Cas1
K09951 cas2; CRISPR-associated protein Cas2
K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
K19114 csh1; CRISPR-associated protein Csh1
K19115 csh2; CRISPR-associated protein Csh2
K19116 cas5h; CRISPR-associated protein Cas5h
K07061 cmr1; CRISPR-associated protein Cmr1
K19076 cmr2; CRISPR-associated protein Cmr2
K09127 cmr3; CRISPR-associated protein Cmr3
K09000 cmr4; CRISPR-associated protein Cmr4
K19141 cmr5; CRISPR-associated protein Cmr5
K19142 cmr6; CRISPR-associated protein Cmr6
K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
K07172 mazE; antitoxin MazE
K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
K03973 pspC; phage shock protein C
K19092 parE1_3_4; toxin ParE1/3/4
K07341 doc; death on curing protein
K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
K03531 ftsZ; cell division protein FtsZ
K03569 mreB; rod shape-determining protein MreB and related proteins
K03569 mreB; rod shape-determining protein MreB and related proteins
K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
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04030 G protein-coupled receptors
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04050 Cytokine receptors
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04054 Pattern recognition receptors
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03310 Nuclear receptors
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04040 Ion channels
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04031 GTP-binding proteins
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04052 Cytokines and neuropeptides
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04515 Cell adhesion molecules
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04090 CD molecules
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01504 Antimicrobial resistance genes [BR:hor01504]
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00535 Proteoglycans
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00536 Glycosaminoglycan binding proteins
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00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:hor00537]
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04091 Lectins
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04990 Domain-containing proteins not elsewhere classified
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Halothermothrix orenii