KEGG Organisms + Keywords

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     Keywords
 Eukaryotes (445)
 
   Animals (177)
     Vertebrates (106)
     Lancelets (1)
     Ascidians (1)
     Echinoderms (2)
     Hemichordates (1)
     Arthropods (44)
       Insects (41)
         dme  Drosophila melanogaster (fruit fly)
         dpo  Drosophila pseudoobscura pseudoobscura
         dan  Drosophila ananassae
         der  Drosophila erecta
         dpe  Drosophila persimilis
         dse  Drosophila sechellia
         dsi  Drosophila simulans
         dwi  Drosophila willistoni
         dya  Drosophila yakuba
         dgr  Drosophila grimshawi
         dmo  Drosophila mojavensis
         dvi  Drosophila virilis
         mde  Musca domestica (house fly)
         aga  Anopheles gambiae (mosquito)
         aag  Aedes aegypti (yellow fever mosquito)
         cqu  Culex quinquefasciatus (southern house mosquito)
         ame  Apis mellifera (honey bee)
         bim  Bombus impatiens (common eastern bumble bee)
         bter  Bombus terrestris (buff-tailed bumblebee)
         soc  Solenopsis invicta (red fire ant)
         aec  Acromyrmex echinatior (Panamanian leafcutter ant)
         acep  Atta cephalotes (leaf cutting ant)
         pbar  Pogonomyrmex barbatus (red harvester ant)
         hst  Harpegnathos saltator (Jerdon's jumping ant)
         cfo  Camponotus floridanus (Florida carpenter ant)
         lhu  Linepithema humile (Argentine ant)
         pgc  Pseudomyrmex gracilis
         nvi  Nasonia vitripennis (jewel wasp)
         tca  Tribolium castaneum (red flour beetle)
         dpa  Dendroctonus ponderosae (mountain pine beetle)
         nvl  Nicrophorus vespilloides
         bmor  Bombyx mori (domestic silkworm)
         dpl  Danaus plexippus (monarch butterfly)
         pmac  Papilio machaon (common yellow swallowtail)
         prap  Pieris rapae (cabbage white)
         pxy  Plutella xylostella (diamondback moth)
         api  Acyrthosiphon pisum (pea aphid)
         dnx  Diuraphis noxia (Russian wheat aphid)
         phu  Pediculus humanus corporis (human body louse)
         zne  Zootermopsis nevadensis
         fcd  Folsomia candida
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Animal pathogen
 
Human pathogen
 
 
       Crustaceans (1)
       Mites and ticks (2)
     Nematodes (6)
       cel  Caenorhabditis elegans (nematode)
       cbr  Caenorhabditis briggsae
       nai  Necator americanus
       bmy  Brugia malayi (filaria)
       loa  Loa loa (eye worm)
       tsp  Trichinella spiralis
 
 
 
Human pathogen
Human pathogen
Human pathogen, Animal pathogen
     Annelids (1)
     Mollusks (4)
     Brachiopodas (1)
     Flatworms (4)
       smm  Schistosoma mansoni
       shx  Schistosoma haematobium
       ovi  Opisthorchis viverrini
       egl  Echinococcus granulosus
Human pathogen
 
Human pathogen
Human pathogen
     Cnidarians (4)
     Placozoans (1)
     Poriferans (1)
 
   Plants (93)
 
   Fungi (125)
     Ascomycetes (90)
       Saccharomycetes (31)
         sce  Saccharomyces cerevisiae (budding yeast)
         ago  Ashbya gossypii (Eremothecium gossypii)
         erc  Eremothecium cymbalariae
         kla  Kluyveromyces lactis
         kmx  Kluyveromyces marxianus
         lth  Lachancea thermotolerans
         vpo  Vanderwaltozyma polyspora
         zro  Zygosaccharomyces rouxii
         cgr  Candida glabrata
         ncs  Naumovozyma castellii
         ndi  Naumovozyma dairenensis
         tpf  Tetrapisispora phaffii
         tbl  Tetrapisispora blattae
         tdl  Torulaspora delbrueckii
         kaf  Kazachstania africana
         ppa  Komagataella phaffii
         dha  Debaryomyces hansenii
         pic  Scheffersomyces stipitis
         pgu  Meyerozyma guilliermondii
         spaa  Spathaspora passalidarum
         lel  Lodderomyces elongisporus
         cal  Candida albicans
         ctp  Candida tropicalis
         cot  Candida orthopsilosis
         cdu  Candida dubliniensis
         cten  Candida tenuis
         yli  Yarrowia lipolytica
         clu  Clavispora lusitaniae ATCC 42720
         clus  Clavispora lusitaniae CBS 6936
         caur  Candida auris
         slb  Sugiyamaella lignohabitans
 
Plant pathogen
 
 
 
 
 
 
Human pathogen
 
 
 
 
 
 
Methylotroph
Methylotroph
Methylotroph
Human pathogen, Methylotroph
 
 
Human pathogen, Plant pathogen
Human pathogen
 
Human pathogen
 
 
Human pathogen
Human pathogen
Human pathogen
 
       Sordariomycetes (25)
         ncr  Neurospora crassa
         nte  Neurospora tetrasperma
         smp  Sordaria macrospora
         pan  Podospora anserina
         ttt  Thielavia terrestris
         mtm  Thermothelomyces thermophila
         cthr  Chaetomium thermophilum
         mgr  Magnaporthe oryzae
         tmn  Phaeoacremonium minimum
         ssck  Sporothrix schenckii
         fgr  Fusarium graminearum
         fpu  Fusarium pseudograminearum
         fvr  Fusarium verticillioides
         fox  Fusarium oxysporum
         nhe  Nectria haematococca
         tre  Trichoderma reesei
         maw  Metarhizium acridum
         maj  Metarhizium robertsii
         cmt  Cordyceps militaris
         plj  Purpureocillium lilacinum
         val  Verticillium alfalfae
         vda  Verticillium dahliae
         cfj  Colletotrichum fioriniae
         ela  Eutypa lata
         pfy  Pestalotiopsis fici
 
 
 
 
 
 
 
Plant pathogen, Methylotroph
Plant pathogen
Human pathogen
Plant pathogen, Methylotroph
Plant pathogen
Plant pathogen
Plant pathogen
Methylotroph, Plant pathogen
Methylotroph
Insect pathogen
Insect pathogen
 
 
Methylotroph, Plant pathogen
Plant pathogen
Plant pathogen
Plant pathogen
 
       Leotiomycetes (5)
       Eurotiomycetes (17)
         ani  Aspergillus nidulans
         afm  Aspergillus fumigatus
         aor  Aspergillus oryzae
         ang  Aspergillus niger
         afv  Aspergillus flavus
         act  Aspergillus clavatus
         nfi  Aspergillus fischeri
         pcs  Penicillium rubens
         pdp  Penicillium digitatum
         cim  Coccidioides immitis
         cpw  Coccidioides posadasii
         pbl  Paracoccidioides lutzii Pb01
         pbn  Paracoccidioides brasiliensis Pb18
         ure  Uncinocarpus reesii
         abe  Trichophyton benhamiae
         tve  Trichophyton verrucosum
         aje  Histoplasma capsulatum
Methylotroph
Human pathogen, Animal pathogen, Methylotroph
Methylotroph
Methylotroph, Plant pathogen
Human pathogen, Methylotroph, Plant pathogen
 
Methylotroph, Plant pathogen
 
Plant pathogen
Human pathogen, Animal pathogen
Human pathogen
Human pathogen
Human pathogen, Animal pathogen
 
 
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
       Dothideomycetes (10)
       Pezizomycetes (1)
       Schizosaccharomycetes (1)
     Basidiomycetes (30)
       cne  Cryptococcus neoformans var. neoformans JEC21
       cnb  Cryptococcus neoformans var. neoformans B-3501A
       cgi  Cryptococcus gattii
       tms  Tremella mesenterica
       ppl  Postia placenta
       tvs  Trametes versicolor
       dsq  Dichomitus squalens
       pco  Phanerochaete carnosa
       shs  Stereum hirsutum
       hir  Heterobasidion irregulare
       psq  Punctularia strigosozonata
       adl  Auricularia subglabra
       fme  Fomitiporia mediterranea
       gtr  Gloeophyllum trabeum
       lbc  Laccaria bicolor
       mpr  Moniliophthora perniciosa
       mrr  Moniliophthora roreri
       cci  Coprinopsis cinerea
       scm  Schizophyllum commune
       abp  Agaricus bisporus var. burnettii JB137-S8
       abv  Agaricus bisporus var. bisporus H97
       cput  Coniophora puteana
       sla  Serpula lacrymans
       wse  Wallemia mellicola
       wic  Wallemia ichthyophaga
       uma  Ustilago maydis
       pfp  Anthracocystis flocculosa
       mgl  Malassezia globosa
       pgr  Puccinia graminis
       mlr  Melampsora larici-populina
Human pathogen, Animal pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
 
 
 
 
 
Plant pathogen
 
 
 
 
 
 
Plant pathogen
Plant pathogen
 
Methylotroph, Plant pathogen
 
 
 
 
 
 
Plant pathogen
 
Human pathogen
Plant pathogen
Plant pathogen
     Microsporidians (5)
       ecu  Encephalitozoon cuniculi
       ein  Encephalitozoon intestinalis
       ehe  Encephalitozoon hellem
       ero  Encephalitozoon romaleae
       nce  Nosema ceranae
Human pathogen, Animal pathogen
Human pathogen
 
 
Insect pathogen
 
   Protists (50)
     Choanoflagellates (2)
     Amoebozoa (7)
       Dictyostelium (2)
       Cavenderia (1)
       Entamoeba (3)
         ehi  Entamoeba histolytica
         edi  Entamoeba dispar
         eiv  Entamoeba invadens
Human pathogen
 
 
       Acanthamoeba (1)
     Alveolates (21)
       Apicomplexans (18)
         pfa  Plasmodium falciparum 3D7
         pfd  Plasmodium falciparum Dd2
         pfh  Plasmodium falciparum HB3
         pyo  Plasmodium yoelii
         pcb  Plasmodium chabaudi
         pbe  Plasmodium berghei
         pkn  Plasmodium knowlesi
         pvx  Plasmodium vivax
         pcy  Plasmodium cynomolgi
         tan  Theileria annulata
         tpv  Theileria parva
         tot  Theileria orientalis
         beq  Theileria equi
         bbo  Babesia bovis
         bmic  Babesia microti
         cpv  Cryptosporidium parvum
         cho  Cryptosporidium hominis
         tgo  Toxoplasma gondii
Human pathogen
Human pathogen
Human pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen, Human pathogen
Human pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen, Human pathogen
Human pathogen
Human pathogen, Animal pathogen
Human pathogen
Human pathogen
       Ciliates (2)
       Dinoflagellates (1)
     Stramenopiles (8)
     Haptophyta (1)
     Cryptomonads (1)
     Euglenozoa (7)
       Kinetoplasts (7)
         tbr  Trypanosoma brucei
         tcr  Trypanosoma cruzi
         lma  Leishmania major
         lif  Leishmania infantum
         ldo  Leishmania donovani
         lmi  Leishmania mexicana
         lbz  Leishmania braziliensis
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
     Heterolobosea (1)
     Parabasalids (1)
       Trichomonads (1)
         tva  Trichomonas vaginalis
Human pathogen
     Diplomonads (1)
       gla  Giardia lamblia
Human pathogen
 
 Prokaryotes (5100)
 
   Bacteria (4826)
     Gammaproteobacteria - Enterobacteria (450)
       Escherichia (68)
         eco  Escherichia coli K-12 MG1655
         ecj  Escherichia coli K-12 W3110
         ecd  Escherichia coli K-12 DH10B
         ebw  Escherichia coli BW2952
         ecok  Escherichia coli K-12 MDS42
         ece  Escherichia coli O157:H7 EDL933 (EHEC)
         ecs  Escherichia coli O157:H7 Sakai (EHEC)
         ecf  Escherichia coli O157:H7 EC4115 (EHEC)
         etw  Escherichia coli O157:H7 TW14359 (EHEC)
         elx  Escherichia coli O157:H7 Xuzhou21 (EHEC)
         eoj  Escherichia coli O26:H11 11368 (EHEC)
         eoi  Escherichia coli O111:H- 11128 (EHEC)
         eoh  Escherichia coli O103:H2 12009 (EHEC)
         ecoo  Escherichia coli O145:H28 RM13514 (EHEC)
         ecoh  Escherichia coli O145:H28 RM13516 (EHEC)
         ecg  Escherichia coli O127:H6 E2348/69 (EPEC)
         eok  Escherichia coli O55:H7 CB9615 (EPEC)
         elr  Escherichia coli O55:H7 RM12579 (EPEC)
         eso  Escherichia coli O104:H4 2009EL-2071
         esm  Escherichia coli O104:H4 2009EL-2050
         esl  Escherichia coli O104:H4 2011C-3493
         ecw  Escherichia coli O139:H28 E24377A (ETEC)
         elh  Escherichia coli O78:H11:K80 H10407 (ETEC)
         eun  Escherichia coli UMNK88 (ETEC, porcine)
         ecc  Escherichia coli O6:K2:H1 CFT073 (UPEC)
         ecp  Escherichia coli O6:K15:H31 536 (UPEC)
         eci  Escherichia coli O18:K1:H7 UTI89 (UPEC)
         ecv  Escherichia coli APEC O1 (APEC)
         ecx  Escherichia coli O9 HS (commensal)
         ecm  Escherichia coli SMS-3-5 (environmental)
         ecy  Escherichia coli O152:H28 SE11 (commensal)
         ecr  Escherichia coli O8 IAI1 (commensal)
         ecq  Escherichia coli O81 ED1a (commensal)
         eck  Escherichia coli 55989 (EAEC)
         ect  Escherichia coli O7:K1 IAI39 (ExPEC)
         eoc  Escherichia coli O7:K1 CE10
         eum  Escherichia coli O17:K52:H18 UMN026 (ExPEC)
         ecz  Escherichia coli O45:K1:H7 S88 (ExPEC)
         elo  Escherichia coli O44:H18 042 (EAEC)
         eln  Escherichia coli O83:H1 NRG 857C
         ese  Escherichia coli O150:H5 SE15 (commensal)
         ecl  Escherichia coli ATCC 8739
         ebr  Escherichia coli B REL606
         ebd  Escherichia coli BL21-Gold(DE3)pLysS AG
         eko  Escherichia coli KO11FL
         ekf  Escherichia coli KO11FL
         eab  Escherichia coli ABU 83972
         edh  Escherichia coli DH1
         edj  Escherichia coli DH1
         eih  Escherichia coli IHE3034
         ena  Escherichia coli NA114 (UPEC)
         elu  Escherichia coli UM146
         elw  Escherichia coli W
         ell  Escherichia coli W
         elc  Escherichia coli clone D i14
         eld  Escherichia coli clone D i2
         elp  Escherichia coli P12b
         ebl  Escherichia coli BL21(DE3)
         ebe  Escherichia coli BL21(DE3)
         elf  Escherichia coli LF82
         ecoa  Escherichia coli APEC O78
         ecol  Escherichia coli LY180
         ecoi  Escherichia coli PMV-1
         ecoj  Escherichia coli JJ1886
         ecos  Escherichia coli O25b:K100:H4-ST131 EC958 (UPEC)
         efe  Escherichia fergusonii
         eal  Escherichia albertii
         ema  Escherichia marmotae
 
 
 
 
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Animal pathogen
Human pathogen
Human pathogen
Human pathogen
Animal pathogen
 
 
 
 
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen, Methylotroph
Human pathogen
Human pathogen
Human pathogen
 
 
 
 
 
 
Human pathogen
 
 
Human pathogen
Human pathogen
Human pathogen
 
 
 
 
 
 
 
 
 
 
Human pathogen
Human pathogen
Human pathogen
 
Human pathogen, Animal pathogen
 
       Salmonella (53)
         sty  Salmonella enterica subsp. enterica serovar Typhi CT18
         stt  Salmonella enterica subsp. enterica serovar Typhi Ty2
         sex  Salmonella enterica subsp. enterica serovar Typhi P-stx-12
         sent  Salmonella enterica subsp. enterica serovar Typhi Ty21a
         stm  Salmonella enterica subsp. enterica serovar Typhimurium LT2
         seo  Salmonella enterica subsp. enterica serovar Typhimurium 14028S
         sev  Salmonella enterica subsp. enterica serovar Typhimurium D23580
         sey  Salmonella enterica subsp. enterica serovar Typhimurium SL1344
         sem  Salmonella enterica subsp. enterica serovar Typhimurium T000240
         sej  Salmonella enterica subsp. enterica serovar Typhimurium UK-1
         seb  Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
         sef  Salmonella enterica subsp. enterica serovar Typhimurium 798
         setu  Salmonella enterica subsp. enterica serovar Typhimurium U288
         setc  Salmonella enterica subsp. enterica serovar Typhimurium var. 5- CFSAN001921
         senr  Salmonella enterica subsp. enterica serovar Typhimurium DT2
         send  Salmonella enterica subsp. enterica serovar Typhimurium DT104
         seni  Salmonella enterica subsp. enterica serovar Typhimurium 138736
         seen  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736
         spt  Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150
         sek  Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601
         spq  Salmonella enterica subsp. enterica serovar Paratyphi B
         sei  Salmonella enterica subsp. enterica serovar Paratyphi C
         sec  Salmonella enterica subsp. enterica serovar Choleraesuis
         seh  Salmonella enterica subsp. enterica serovar Heidelberg SL476
         shb  Salmonella enterica subsp. enterica serovar Heidelberg B182
         senh  Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069
         seeh  Salmonella enterica subsp. enterica serovar Heidelberg 41578
         see  Salmonella enterica subsp. enterica serovar Newport SL254
         senn  Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1
         sew  Salmonella enterica subsp. enterica serovar Schwarzengrund
         sea  Salmonella enterica subsp. enterica serovar Agona SL483
         sens  Salmonella enterica subsp. enterica serovar Agona 24249
         sed  Salmonella enterica subsp. enterica serovar Dublin
         seg  Salmonella enterica subsp. enterica serovar Gallinarum 287/91
         sel  Salmonella enterica subsp. enterica serovar Gallinarum/pullorum RKS5078
         sega  Salmonella enterica subsp. enterica serovar Gallinarum/pullorum CDC1983-67
         set  Salmonella enterica subsp. enterica serovar Enteritidis P125109
         sena  Salmonella enterica subsp. enterica serovar Enteritidis EC20090135
         seno  Salmonella enterica subsp. enterica serovar Enteritidis EC20090193
         senv  Salmonella enterica subsp. enterica serovar Enteritidis EC20090332
         senq  Salmonella enterica subsp. enterica serovar Enteritidis EC20090531
         senl  Salmonella enterica subsp. enterica serovar Enteritidis OLF-SE1-1019-1
         senj  Salmonella enterica subsp. enterica serovar Javiana
         seec  Salmonella enterica subsp. enterica serovar Cubana
         seeb  Salmonella enterica subsp. enterica serovar Bareilly
         seep  Salmonella enterica subsp. enterica serovar Pullorum
         senb  Salmonella enterica subsp. enterica serovar Bovismorbificans
         sene  Salmonella enterica subsp. enterica serovar Thompson
         senc  Salmonella enterica subsp. enterica serovar Tennessee
         ses  Salmonella enterica subsp. arizonae
         sbg  Salmonella bongori NCTC 12419
         sbz  Salmonella bongori N268-08
         sbv  Salmonella bongori serovar 48:z41:--
Human pathogen
Human pathogen
Human pathogen
 
Human pathogen, Methylotroph
Animal pathogen, Human pathogen, Methylotroph
Human pathogen, Methylotroph
Animal pathogen, Methylotroph
Animal pathogen, Human pathogen, Methylotroph
Animal pathogen, Methylotroph
Animal pathogen, Methylotroph
Methylotroph
Methylotroph
Human pathogen, Animal pathogen, Methylotroph
Animal pathogen, Methylotroph
Human pathogen, Animal pathogen, Methylotroph
Human pathogen
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen, Animal pathogen
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Animal pathogen
Animal pathogen
 
Human pathogen
 
 
 
 
 
 
Human pathogen
 
 
 
 
 
Human pathogen
 
 
 
       Shigella (13)
         sfl  Shigella flexneri 301 (serotype 2a)
         sfx  Shigella flexneri 2457T (serotype 2a)
         sfv  Shigella flexneri 8401 (serotype 5b)
         sfe  Shigella flexneri 2002017 (serotype Fxv)
         sfn  Shigella flexneri 2003036
         sfs  Shigella flexneri Shi06HN006 (serotype Yv)
         sft  Shigella flexneri NCTC1
         ssn  Shigella sonnei Ss046
         sbo  Shigella boydii Sb227
         sbc  Shigella boydii CDC 3083-94
         sdy  Shigella dysenteriae Sd197
         sdz  Shigella dysenteriae 1617
         shq  Shigella sp. PAMC 28760
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
       Enterobacter (27)
         ent  Enterobacter sp. 638
         enc  Enterobacter cloacae subsp. cloacae ATCC 13047
         eno  Enterobacter cloacae subsp. cloacae ENHKU01
         eclo  Enterobacter cloacae subsp. cloacae NCTC 9394
         eec  Enterobacter cloacae EcWSU1
         enl  Enterobacter cloacae subsp. dissolvens SDM
         eclg  Enterobacter cloacae GGT036
         ecle  Enterobacter cloacae ECNIH2
         ecln  Enterobacter cloacae ECNIH4
         ecli  Enterobacter cloacae ECNIH5
         eclx  Enterobacter hormaechei subsp. oharae
         ecly  Enterobacter hormaechei subsp. steigerwaltii
         eclz  Enterobacter hormaechei subsp. hormaechei
         ehm  Enterobacter hormaechei CAV1176
         exf  Enterobacter hormaechei subsp. xiangfangensis
         ecla  Enterobacter hormaechei subsp. hoffmannii ECNIH3
         eclc  Enterobacter hormaechei subsp. hoffmannii ECR091
         eas  Enterobacter asburiae LF7a
         eau  Enterobacter asburiae L1
         ekb  Enterobacter kobei
         elg  Enterobacter ludwigii
         ecls  Enterobacter cloacae complex sp. 35734
         ecan  Enterobacter cancerogenus
         ern  Enterobacter roggenkampii
         enr  Enterobacter sp. R4-368
         enx  Enterobacter sp. E20
         enf  Enterobacter sp. FY-07
 
Human pathogen, Plant pathogen
Plant pathogen
Plant pathogen
Human pathogen, Plant pathogen
 
 
Plant pathogen
Plant pathogen
Plant pathogen
Plant pathogen
Plant pathogen
Plant pathogen
 
 
 
Plant pathogen
 
 
 
 
 
 
 
 
 
 
       Cronobacter (11)
         esa  Cronobacter sakazakii ATCC BAA-894
         csk  Cronobacter sakazakii ES15
         csz  Cronobacter sakazakii Sp291
         csj  Cronobacter sakazakii ATCC 29544
         ccon  Cronobacter condimenti
         cdm  Cronobacter dublinensis
         csi  Cronobacter malonaticus CMCC45402
         cmj  Cronobacter malonaticus LMG 23826
         cui  Cronobacter universalis
         cmw  Cronobacter muytjensii
         ctu  Cronobacter turicensis
Human pathogen
Human pathogen
 
 
 
 
 
 
 
 
Human pathogen
       Klebsiella (40)
         kpn  Klebsiella pneumoniae subsp. pneumoniae MGH 78578
         kpu  Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
         kpm  Klebsiella pneumoniae subsp. pneumoniae HS11286
         kpp  Klebsiella pneumoniae subsp. pneumoniae 1084
         kpk  Klebsiella pneumoniae subsp. pneumoniae KP5-1
         kph  Klebsiella pneumoniae subsp. pneumoniae KPNIH24
         kpz  Klebsiella pneumoniae subsp. pneumoniae KPNIH27
         kpv  Klebsiella pneumoniae subsp. pneumoniae KPNIH29
         kpw  Klebsiella pneumoniae subsp. pneumoniae KPNIH30
         kpy  Klebsiella pneumoniae subsp. pneumoniae KPNIH31
         kpg  Klebsiella pneumoniae subsp. pneumoniae KPNIH32
         kpc  Klebsiella pneumoniae subsp. pneumoniae KPNIH10
         kpq  Klebsiella pneumoniae subsp. pneumoniae KPR0928
         kpt  Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 KPPR1
         kpe  Klebsiella pneumoniae 342
         kpo  Klebsiella pneumoniae KCTC 2242
         kpr  Klebsiella pneumoniae subsp. rhinoscleromatis SB3432
         kpj  Klebsiella pneumoniae JM45
         kpi  Klebsiella pneumoniae CG43
         kpa  Klebsiella pneumoniae 30660/NJST258_1
         kps  Klebsiella pneumoniae 30684/NJST258_2
         kpx  Klebsiella pneumoniae PMK1
         kpb  Klebsiella pneumoniae blaNDM-1
         kpne  Klebsiella pneumoniae 32192
         kpnu  Klebsiella pneumoniae 34618
         kpnk  Klebsiella pneumoniae Kp52.145
         kva  Klebsiella variicola At-22
         kvd  Klebsiella variicola DX120E
         kvq  Klebsiella variicola DSM 15968
         kox  Klebsiella michiganensis KCTC 1686
         koe  Klebsiella michiganensis E718
         koy  Klebsiella michiganensis HKOPL1
         kom  Klebsiella michiganensis M1
         kmi  Klebsiella michiganensis RC10
         kok  Klebsiella oxytoca KONIH1
         koc  Klebsiella oxytoca CAV1374
         kqu  Klebsiella quasipneumoniae
         eae  Klebsiella aerogenes KCTC 2190
         ear  Klebsiella aerogenes EA1509E
         kqv  Klebsiella quasivariicola
Human pathogen, Methylotroph
Human pathogen
Human pathogen
Human pathogen
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
Human pathogen
 
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
Human pathogen, Animal pathogen
 
 
 
 
Human pathogen
 
 
 
Human pathogen
 
Human pathogen
 
Human pathogen
 
       Citrobacter (12)
         cko  Citrobacter koseri
         cro  Citrobacter rodentium
         cfd  Citrobacter freundii
         cbra  Citrobacter braakii
         cwe  Citrobacter werkmanii
         cyo  Citrobacter youngae
         cama  Citrobacter amalonaticus Y19
         caf  Citrobacter amalonaticus FDAARGOS_165
         cif  Citrobacter sp. FDAARGOS_156
         cfar  Citrobacter farmeri
         cir  Citrobacter sp. CFNIH10
         cie  Citrobacter sp. CRE-46
Human pathogen
Animal pathogen
 
 
 
 
 
 
 
 
 
 
       Gibbsiella (1)
       Blochmannia (6)
       Hamiltonella (1)
       Unclassified aphid symbionts (2)
       Unclassified mealybug symbionts (1)
       Riesia (2)
       Moranella (2)
       Shimwellia (1)
       Raoultella (4)
       Cedecea (3)
       Pluralibacter (3)
       Kosakonia (4)
       Kluyvera (2)
       Ishikawaella (1)
       Leclercia (3)
       Lelliottia (4)
       Limnobaculum (1)
       Tachikawaea (1)
       Doolittlea (1)
       Hoaglandella (1)
       Gullanella (1)
       Mikella (1)
       Unclassified Enterobacteria (3)
       Yersinia (44)
         ype  Yersinia pestis CO92 (biovar Orientalis)
         ypk  Yersinia pestis KIM10+ (biovar Mediaevalis)
         yph  Yersinia pestis Harbin 35 (biovar Medievalis)
         ypa  Yersinia pestis Antiqua (biovar Antiqua)
         ypn  Yersinia pestis Nepal516 (biovar Antiqua)
         ypm  Yersinia pestis 91001 (biovar Microtus)
         ypp  Yersinia pestis Pestoides F (biovar Antiqua)
         ypg  Yersinia pestis Angola
         ypz  Yersinia pestis Z176003
         ypt  Yersinia pestis A1122
         ypd  Yersinia pestis D106004
         ypx  Yersinia pestis D182038
         ypw  Yersinia pestis PBM19
         ypj  Yersinia pestis Harbin35
         ypv  Yersinia pestis Shasta
         ypl  Yersinia pestis El Dorado
         yps  Yersinia pseudotuberculosis IP 32953 (serotype I)
         ypo  Yersinia pseudotuberculosis IP 32953 (serotype 1)
         ypi  Yersinia pseudotuberculosis IP 31758 (serotype O:1b)
         ypy  Yersinia pseudotuberculosis YPIII
         ypb  Yersinia pseudotuberculosis PB1/+
         ypq  Yersinia pseudotuberculosis ATCC 6904
         ypu  Yersinia pseudotuberculosis MD67
         ypr  Yersinia pseudotuberculosis EP2/+
         ypc  Yersinia pseudotuberculosis 1
         ypf  Yersinia pseudotuberculosis PA3606
         yen  Yersinia enterocolitica subsp. enterocolitica 8081
         yep  Yersinia enterocolitica subsp. palearctica 105.5R(r)
         yey  Yersinia enterocolitica subsp. palearctica Y11
         yel  Yersinia enterocolitica LC20
         yew  Yersinia enterocolitica WA
         yet  Yersinia enterocolitica 2516-87
         yef  Yersinia enterocolitica FORC_002
         yee  Yersinia enterocolitica (type O:5) YE53/03
         ysi  Yersinia similis
         yal  Yersinia aldovae
         yfr  Yersinia frederiksenii
         yin  Yersinia intermedia
         ykr  Yersinia kristensenii
         yro  Yersinia rohdei
         yru  Yersinia ruckeri YRB
         yrb  Yersinia ruckeri Big Creek 74
         yak  Yersinia aleksiciae
         yma  Yersinia massiliensis
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
 
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Animal pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Animal pathogen
 
Human pathogen
Human pathogen
 
 
 
 
Human pathogen, Animal pathogen
 
Human pathogen
Human pathogen
Human pathogen
 
 
 
 
 
Human pathogen
Human pathogen
Human pathogen
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Serratia (20)
         spe  Serratia proteamaculans
         srr  Serratia plymuthica AS9
         srl  Serratia plymuthica 4Rx13
         sry  Serratia plymuthica S13
         sply  Serratia plymuthica PRI-2C
         srs  Serratia sp. AS12
         sra  Serratia sp. AS13
         ssz  Serratia symbiotica
         smaf  Serratia sp. FGI94
         smw  Serratia marcescens WW4
         smar  Serratia marcescens SM39
         smac  Serratia marcescens subsp. marcescens Db11
         slq  Serratia liquefaciens
         serf  Serratia sp. FS14
         sers  Serratia sp. SCBI
         sfw  Serratia fonticola DSM 4576
         sfg  Serratia fonticola GS2
         srz  Serratia rubidaea
         sera  Serratia sp. ATCC 39006
         serm  Serratia sp. MYb239
Human pathogen
 
 
 
 
 
 
 
 
 
Human pathogen
 
 
 
 
 
 
 
 
 
       Chania (1)
       Rahnella (3)
       Rouxiella (1)
       Pectobacterium (11)
       Sodalis (4)
       Dickeya (9)
       Brenneria (1)
       Erwinia (8)
       Buchnera (18)
       Wigglesworthia (2)
       Pantoea (17)
         pam  Pantoea ananatis LMG 20103
         plf  Pantoea ananatis LMG 5342
         paj  Pantoea ananatis AJ13355
         paq  Pantoea ananatis PA13
         pva  Pantoea vagans C9-1
         pagg  Pantoea vagans FDAARGOS_160
         pao  Pantoea sp. At-9b
         kln  Pantoea rwandensis
         pant  Pantoea sp. PSNIH1
         panp  Pantoea sp. PSNIH2
         hhs  Candidatus Pantoea carbekii
         pck  Candidatus Pantoea carbekii US
         pagc  Pantoea agglomerans C410P1
         pstw  Pantoea stewartii subsp. stewartii
         palh  Pantoea alhagi
         pgz  Pantoea gaviniae
         pcd  Pantoea calida
Plant pathogen, Human pathogen
Plant pathogen, Human pathogen
 
Plant pathogen
 
Plant pathogen
 
 
 
 
Endosymbiont
 
 
Plant pathogen
 
 
 
       Tatumella (2)
       Photorhabdus (4)
         plu  Photorhabdus laumondii subsp. laumondii TTO1
         plum  Photorhabdus laumondii subsp. laumondii DSPV002N
         pay  Photorhabdus asymbiotica
         ptt  Photorhabdus thracensis
Insect pathogen
Insect pathogen
Human pathogen
 
       Proteus (4)
         pmr  Proteus mirabilis HI4320
         pmib  Proteus mirabilis BB2000
         pvl  Proteus mirabilis CYPV1
         pvg  Proteus vulgaris
Human pathogen
Human pathogen
 
 
       Xenorhabdus (7)
       Providencia (6)
         psi  Providencia stuartii MRSN 2154
         psx  Providencia stuartii ATCC 33672
         psta  Providencia stuartii BE2467
         prg  Providencia rettgeri
         pala  Providencia alcalifaciens
         phei  Providencia heimbachae
Human pathogen
Human pathogen
Human pathogen
 
 
 
       Morganella (1)
         mmk  Morganella morganii
Human pathogen
       Arsenophonus (1)
       Edwardsiella (8)
       Hafnia (1)
         hav  Hafnia alvei
Human pathogen
       Obesumbacterium (1)
       Pragia (1)
       Leminorella (1)
       Plesiomonas (1)
     Gammaproteobacteria - Others (693)
       Haemophilus (17)
         hin  Haemophilus influenzae Rd KW20 (serotype d)
         hit  Haemophilus influenzae 86-028NP (nontypeable)
         hip  Haemophilus influenzae PittEE (nontypeable)
         hiq  Haemophilus influenzae PittGG (nontypeable)
         hif  Haemophilus influenzae F3031 (nontypeable)
         hil  Haemophilus influenzae F3047 (nontypeable)
         hiu  Haemophilus influenzae 10810 (serotype b)
         hie  Haemophilus influenzae R2846 (nontypeable)
         hiz  Haemophilus influenzae R2866 (nontypeable)
         hik  Haemophilus influenzae KR494 (serotype f)
         hia  Haemophilus influenzae CGSHiCZ412602
         hih  Haemophilus influenzae Hi375
         hiw  Haemophilus influenzae 477
         hic  Haemophilus influenzae C486
         hix  Haemophilus influenzae 723
         hpr  Haemophilus parainfluenzae
         hdu  Haemophilus ducreyi
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
Human pathogen
 
Human pathogen
 
 
 
 
Human pathogen
       Glaesserella (4)
       Histophilus (2)
       Pasteurella (6)
         pmu  Pasteurella multocida subsp. multocida Pm70
         pmv  Pasteurella multocida subsp. multocida HN06
         pul  Pasteurella multocida subsp. multocida 3480
         pmp  Pasteurella multocida 36950
         pmul  Pasteurella multocida ATCC 43137
         pdag  Pasteurella dagmatis
Animal pathogen, Human pathogen
Human pathogen, Animal pathogen
 
Animal pathogen
Human pathogen
 
       Basfia (1)
       Mannheimia (14)
       Actinobacillus (8)
       Aggregatibacter (8)
         aap  Aggregatibacter aphrophilus NJ8700
         aaz  Aggregatibacter aphrophilus W10433
         aat  Aggregatibacter actinomycetemcomitans D11S-1
         aao  Aggregatibacter actinomycetemcomitans ANH9381
         aan  Aggregatibacter actinomycetemcomitans D7S-1
         aah  Aggregatibacter actinomycetemcomitans HK1651
         aacn  Aggregatibacter actinomycetemcomitans NUM4039
         aact  Aggregatibacter actinomycetemcomitans 624
Human pathogen
 
Human pathogen
Human pathogen
Human pathogen
 
 
 
       Gallibacterium (1)
       Bibersteinia (4)
       Xylella (8)
       Xanthomonas (34)
       Stenotrophomonas (10)
         sml  Stenotrophomonas maltophilia K279a
         smt  Stenotrophomonas maltophilia R551-3
         buj  Stenotrophomonas maltophilia JV3
         smz  Stenotrophomonas maltophilia D457
         sacz  Stenotrophomonas acidaminiphila
         stek  Stenotrophomonas sp. KCTC 12332
         srh  Stenotrophomonas rhizophila
         slm  Stenotrophomonas sp. LM091
         sten  Stenotrophomonas sp. WZN-1
         stem  Stenotrophomonas sp. MYb57
Human pathogen
 
 
Human pathogen
 
 
 
 
 
 
       Pseudoxanthomonas (3)
       Lysobacter (7)
       Luteimonas (2)
       Frateuria (1)
       Rhodanobacter (1)
       Dyella (3)
       Dokdonella (1)
       Luteibacter (1)
       Ahniella (1)
       Vibrio (49)
         vch  Vibrio cholerae O1 El Tor N16961
         vcf  Vibrio cholerae O1 El Tor FJ147
         vcs  Vibrio cholerae O1 El Tor MS6
         vce  Vibrio cholerae O1 2010EL-1786
         vcq  Vibrio cholerae O1 2012EL-2176
         vcj  Vibrio cholerae O1 MJ-1236
         vci  Vibrio cholerae O1 IEC224
         vco  Vibrio cholerae O1 O395
         vcr  Vibrio cholerae O1 O395
         vcm  Vibrio cholerae O1 M66-2
         vcl  Vibrio cholerae O1 LMA3984-4
         vcx  Vibrio cholerae O49 1154-74
         vcz  Vibrio cholerae O27 10432-62
         vvu  Vibrio vulnificus CMCP6
         vvy  Vibrio vulnificus YJ016
         vvm  Vibrio vulnificus MO6-24/O
         vvl  Vibrio vulnificus 93U204
         vpa  Vibrio parahaemolyticus RIMD 2210633
         vpb  Vibrio parahaemolyticus BB22OP
         vpk  Vibrio parahaemolyticus O1:K33 CDC_K4557
         vpf  Vibrio parahaemolyticus O1:Kuk FDA_R31
         vph  Vibrio parahaemolyticus UCM-V493
         vha  Vibrio campbellii
         vca  Vibrio campbellii
         vag  Vibrio alginolyticus
         vex  Vibrio antiquarius
         vhr  Vibrio harveyi
         vna  Vibrio natriegens
         vow  Vibrio owensii
         vro  Vibrio rotiferianus
         vdb  Vibrio diabolicus
         vsp  Vibrio tasmaniensis
         vej  Vibrio sp. EJY3
         vfu  Vibrio furnissii
         vni  Vibrio nigripulchritudo
         van  Vibrio anguillarum 775
         lag  Vibrio anguillarum M3
         vau  Vibrio anguillarum NB10
         vcy  Vibrio coralliilyticus RE98
         vct  Vibrio coralliilyticus OCN014
         vtu  Vibrio tubiashii
         vfl  Vibrio fluvialis
         vmi  Vibrio mimicus
         vbr  Vibrio breoganii
         vsc  Vibrio scophthalmi
         vga  Vibrio gazogenes
         vsh  Vibrio shilonii
         vqi  Vibrio qinghaiensis
         vta  Vibrio tapetis
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
 
Human pathogen
Human pathogen
Human pathogen
Fish pathogen
Human pathogen
 
Human pathogen
 
 
 
 
Human pathogen
 
 
 
 
 
 
Animal pathogen
 
Human pathogen, Animal pathogen
Shrimp pathogen
Fish pathogen
 
Fish pathogen
 
 
Shellfish pathogen
 
 
 
 
 
 
 
 
       Aliivibrio (4)
       Photobacterium (3)
       Grimontia (1)
       Paraphotobacterium (1)
       Pseudomonas (108)
         pae  Pseudomonas aeruginosa PAO1
         paev  Pseudomonas aeruginosa PAO1-VE13
         paei  Pseudomonas aeruginosa PAO1-VE2
         pau  Pseudomonas aeruginosa UCBPP-PA14
         pap  Pseudomonas aeruginosa PA7
         pag  Pseudomonas aeruginosa LESB58
         paf  Pseudomonas aeruginosa M18
         pnc  Pseudomonas aeruginosa NCGM2.S1
         paeb  Pseudomonas aeruginosa NCGM 1900
         pdk  Pseudomonas aeruginosa DK2
         psg  Pseudomonas aeruginosa B136-33
         prp  Pseudomonas aeruginosa RP73
         paep  Pseudomonas aeruginosa PA1
         paer  Pseudomonas aeruginosa PA1R
         paem  Pseudomonas aeruginosa MTB-1
         pael  Pseudomonas aeruginosa LES431
         paes  Pseudomonas aeruginosa SCV20265
         paeu  Pseudomonas aeruginosa PA38182
         paeg  Pseudomonas aeruginosa YL84
         paec  Pseudomonas aeruginosa c7447m
         paeo  Pseudomonas aeruginosa PAO581
         pmy  Pseudomonas mendocina ymp
         pmk  Pseudomonas mendocina NK-01
         pre  Pseudomonas resinovorans
         ppse  Pseudomonas pseudoalcaligenes
         palc  Pseudomonas alcaligenes
         pcq  Pseudomonas citronellolis
         ppu  Pseudomonas putida KT2440
         ppf  Pseudomonas putida F1
         ppg  Pseudomonas putida GB-1
         ppw  Pseudomonas putida W619
         ppt  Pseudomonas putida S16
         ppb  Pseudomonas putida BIRD-1
         ppi  Pseudomonas putida ND6
         ppx  Pseudomonas putida DOT-T1E
         ppuh  Pseudomonas putida HB3267
         pput  Pseudomonas putida H8234
         ppun  Pseudomonas putida NBRC 14164
         ppud  Pseudomonas putida DLL-E4
         pfv  Pseudomonas fulva
         pmon  Pseudomonas monteilii SB3078
         pmot  Pseudomonas monteilii SB3101
         pmos  Pseudomonas mosselii
         ppj  Pseudomonas plecoglossicida
         por  Pseudomonas oryzihabitans
         pst  Pseudomonas syringae pv. tomato DC3000
         psb  Pseudomonas syringae pv. syringae B728a
         psyr  Pseudomonas syringae CC1557
         psp  Pseudomonas savastanoi pv. phaseolicola 1448A
         pamg  Pseudomonas amygdali
         pci  Pseudomonas cichorii
         pavl  Pseudomonas avellanae
         pfl  Pseudomonas protegens Pf-5
         pprc  Pseudomonas protegens CHA0
         ppro  Pseudomonas protegens Cab57
         pfo  Pseudomonas fluorescens Pf0-1
         pfs  Pseudomonas fluorescens SBW25
         pfe  Pseudomonas fluorescens F113
         pfc  Pseudomonas fluorescens A506
         pfn  Pseudomonas fluorescens UK4
         pfw  Pseudomonas fluorescens PCL1751
         pff  Pseudomonas fluorescens PICF7
         pfx  Pseudomonas fluorescens L228
         ppz  Pseudomonas poae
         pfb  Pseudomonas synxantha LBUM223
         pman  Pseudomonas mandelii
         ptv  Pseudomonas trivialis
         pcg  Pseudomonas corrugata
         pvr  Pseudomonas veronii
         pazo  Pseudomonas azotoformans
         poi  Pseudomonas orientalis
         pen  Pseudomonas entomophila
         psa  Pseudomonas stutzeri A1501
         psz  Pseudomonas stutzeri ATCC 17588
         psr  Pseudomonas stutzeri DSM 4166
         psc  Pseudomonas stutzeri CCUG 29243
         psj  Pseudomonas stutzeri DSM 10701
         psh  Pseudomonas stutzeri RCH2
         pstu  Pseudomonas stutzeri 19SMN4
         pstt  Pseudomonas stutzeri 28a24
         pbm  Pseudomonas balearica
         pba  Pseudomonas brassicacearum subsp. brassicacearum NFM421
         pbc  Pseudomonas brassicacearum DF41
         ppuu  Pseudomonas sp. UW4
         pdr  Pseudomonas sp. ATCC 13867
         psv  Pseudomonas sp. VLB120
         psk  Pseudomonas sp. TKP
         pkc  Pseudomonas knackmussii
         pch  Pseudomonas chlororaphis PA23
         pcz  Pseudomonas chlororaphis PCL1606
         pcp  Pseudomonas chlororaphis subsp. aurantiaca
         pfz  Pseudomonas fragi
         plq  Pseudomonas lundensis
         palk  Pseudomonas alkylphenolica
         prh  Pseudomonas rhizosphaerae
         psw  Pseudomonas cremoricolorata
         ppv  Pseudomonas parafulva
         pses  Pseudomonas sp. StFLB209
         psem  Pseudomonas sp. MRSN12121
         psec  Pseudomonas sp. CCOS 191
         ppsy  Pseudomonas versuta
         psos  Pseudomonas sp. Os17
         pkr  Pseudomonas koreensis
         pfk  Pseudomonas frederiksbergensis
         panr  Pseudomonas antarctica
         ppsl  Pseudomonas psychrotolerans
         pset  Pseudomonas sp. TCU-HL1
         psil  Pseudomonas silesiensis
Human pathogen, Denitrification, Plant pathogen
Plant pathogen
Plant pathogen
Human pathogen, Animal pathogen, Plant pathogen, Denitrification
Human pathogen, Denitrification, Plant pathogen
Human pathogen, Denitrification, Plant pathogen
Denitrification, Plant pathogen
Human pathogen, Denitrification, Plant pathogen
Plant pathogen
Human pathogen, Denitrification, Plant pathogen
Denitrification, Plant pathogen
Human pathogen, Denitrification, Plant pathogen
Human pathogen, Denitrification, Plant pathogen
Denitrification, Plant pathogen
Denitrification, Plant pathogen
Denitrification, Plant pathogen
Human pathogen, Denitrification, Plant pathogen
Plant pathogen
Plant pathogen
Plant pathogen
Plant pathogen
 
Denitrification
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Plant pathogen
Plant pathogen
Plant pathogen
Plant pathogen
 
Plant pathogen
 
 
 
 
Plant pathogen
Plant pathogen
Denitrification, Plant pathogen
Plant pathogen
Plant pathogen
Plant pathogen
Plant pathogen
 
 
Plant pathogen
 
 
 
 
 
 
Insect pathogen
Denitrification
Denitrification
Denitrification
Denitrification
Denitrification
Denitrification
 
 
 
Denitrification
 
 
Denitrification
 
Denitrification
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Azotobacter (4)
       Oblitimonas (1)
       Psychrobacter (11)
       Acinetobacter (39)
         acb  Acinetobacter baumannii ATCC 17978
         abm  Acinetobacter baumannii SDF
         aby  Acinetobacter baumannii AYE
         abc  Acinetobacter baumannii ACICU
         abn  Acinetobacter baumannii AB0057
         abb  Acinetobacter baumannii AB307-0294
         abx  Acinetobacter baumannii 1656-2
         abz  Acinetobacter baumannii MDR-ZJ06
         abr  Acinetobacter baumannii MDR-TJ
         abd  Acinetobacter baumannii TCDC-AB0715
         abh  Acinetobacter baumannii TYTH-1
         abad  Acinetobacter baumannii D1279779
         abj  Acinetobacter baumannii BJAB07104
         abab  Acinetobacter baumannii BJAB0715
         abaj  Acinetobacter baumannii BJAB0868
         abaz  Acinetobacter baumannii ZW85-1
         abk  Acinetobacter baumannii AbH12O-A2
         abau  Acinetobacter baumannii AB030
         abaa  Acinetobacter baumannii AB031
         abw  Acinetobacter baumannii AC29
         abal  Acinetobacter baumannii LAC-4
         acc  Acinetobacter pittii
         ano  Acinetobacter nosocomialis
         alc  Acinetobacter lactucae
         acal  Acinetobacter calcoaceticus
         acd  Acinetobacter oleivorans
         aci  Acinetobacter sp. ADP1
         att  Acinetobacter sp. TTH0-4
         aei  Acinetobacter equi
         ajo  Acinetobacter johnsonii
         acw  Acinetobacter sp. DUT-2
         acv  Acinetobacter sp. TGL-Y2
         ahl  Acinetobacter haemolyticus
         ajn  Acinetobacter junii
         asol  Acinetobacter soli
         ala  Acinetobacter larvae
         asj  Acinetobacter schindleri
         aid  Acinetobacter indicus
         adv  Acinetobacter defluvii
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
Human pathogen
Human pathogen
Human pathogen
 
Human pathogen
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Moraxella (7)
         mct  Moraxella catarrhalis BBH18
         mcs  Moraxella catarrhalis 25240
         mcat  Moraxella catarrhalis 25239
         moi  Moraxella ovis
         mos  Moraxella osloensis
         mbl  Moraxella bovoculi
         mboi  Moraxella bovis
Human pathogen
 
 
 
 
 
 
       Shewanella (30)
       Idiomarina (5)
       Colwellia (5)
       Pseudoalteromonas (19)
       Marinobacter (10)
       Alteromonas (19)
       Glaciecola (2)
       Paraglaciecola (1)
       Lacimicrobium (1)
       Catenovulum (1)
       Salinimonas (1)
       Psychromonas (2)
       Ferrimonas (1)
       Moritella (2)
       Cellvibrio (3)
       Saccharophagus (1)
       Teredinibacter (1)
       Simiduia (1)
       Spongiibacter (1)
       Zhongshania (1)
       Oceanicoccus (1)
       Microbulbifer (4)
       Halioglobus (1)
       Coxiella (6)
         cbu  Coxiella burnetii RSA 493
         cbs  Coxiella burnetii RSA 331
         cbd  Coxiella burnetii Dugway 5J108-111
         cbg  Coxiella burnetii CbuG_Q212
         cbc  Coxiella burnetii CbuK_Q154
         cea  Coxiella endosymbiont of Amblyomma americanum
Human pathogen, Animal pathogen
Human pathogen
Animal pathogen
Human pathogen
Human pathogen
 
       Unclassified Coxiellaceae (1)
       Legionella (18)
         lpn  Legionella pneumophila subsp. pneumophila Philadelphia 1 (serogroup 1)
         lph  Legionella pneumophila subsp. pneumophila HL06041035 (serogroup 1)
         lpo  Legionella pneumophila subsp. pneumophila Lorraine (serogroup 1)
         lpu  Legionella pneumophila subsp. pneumophila LPE509
         lpm  Legionella pneumophila subsp. pneumophila Thunder Bay
         lpf  Legionella pneumophila Lens (serogroup 1)
         lpp  Legionella pneumophila Paris (serogroup 1)
         lpc  Legionella pneumophila Corby
         lpa  Legionella pneumophila 2300/99 Alcoy (serogroup 1)
         lpe  Legionella pneumophila subsp. pneumophila ATCC 43290 (serogroup 12)
         llo  Legionella longbeachae
         lfa  Legionella fallonii
         lha  Legionella hackeliae
         lok  Legionella oakridgensis
         lcd  Legionella clemsonensis
         les  Legionella endosymbiont of Polyplax serrata
         lsh  Legionella sainthelensi
         llg  Legionella lansingensis
Human pathogen
 
 
 
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
 
 
Endosymbiont
Human pathogen
 
       Tatlockia (1)
       Methylococcus (1)
       Methylomonas (4)
       Methylomicrobium (1)
       Methylovulum (1)
       Francisella (39)
         ftu  Francisella tularensis subsp. tularensis SCHU S4
         ftq  Francisella tularensis subsp. tularensis SCHU S4 NR-28534
         ftf  Francisella tularensis subsp. tularensis FSC198
         ftw  Francisella tularensis subsp. tularensis WY96-3418
         ftr  Francisella tularensis subsp. tularensis NE061598
         ftt  Francisella tularensis subsp. tularensis TI0902
         ftg  Francisella tularensis subsp. tularensis TIGB03
         ftl  Francisella tularensis subsp. holarctica LVS
         fth  Francisella tularensis subsp. holarctica OSU18
         fta  Francisella tularensis subsp. holarctica FTNF002-00
         fts  Francisella tularensis subsp. holarctica F92
         fti  Francisella tularensis subsp. holarctica FSC200
         fto  Francisella tularensis subsp. holarctica PHIT-FT049
         ftc  Francisella tularensis subsp. holarctica FTT_1
         ftv  Francisella tularensis subsp. holarctica VT68
         ftz  Francisella tularensis subsp. holarctica 425
         ftm  Francisella tularensis subsp. mediasiatica FSC147
         ftn  Francisella tularensis subsp. novicida U112
         ftx  Francisella tularensis subsp. novicida U112
         ftd  Francisella tularensis subsp. novicida F6168
         fty  Francisella tularensis subsp. novicida DPG 3A-IS
         fcf  Francisella cf. novicida Fx1
         fcn  Francisella cf. tularensis subsp. novicida 3523
         fph  Francisella philomiragia subsp. philomiragia ATCC 25017
         fpt  Francisella philomiragia subsp. philomiragia ATCC 25015 O#319L
         fpi  Francisella philomiragia O#319-029
         fpm  Francisella philomiragia O#319-036
         fpx  Francisella philomiragia O#319-067
         fpz  Francisella philomiragia GA01-2794
         fpj  Francisella philomiragia GA01-2801
         frt  Francisella sp. TX077308
         fna  Francisella noatunensis subsp. orientalis Toba 04
         fnl  Francisella noatunensis subsp. orientalis LADL--07-285A
         frf  Francisella sp. FSC1006
         fper  Francisella persica
         fhi  Francisella hispaniensis
         fha  Francisella halioticida
         frx  Francisella sp. TX077310
         frm  Francisella sp. MA067296
Human pathogen
 
 
Human pathogen
Human pathogen
Animal pathogen
 
Human pathogen, Animal pathogen, Vaccine
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Fish pathogen
 
 
 
 
 
 
 
       Allofrancisella (1)
       Hydrogenovibrio (1)
       Thiomicrospira (2)
       Methylophaga (2)
       Cycloclasticus (3)
       Piscirickettsia (1)
       Thioploca (1)
       Beggiatoa (1)
       Nitrosococcus (3)
       Allochromatium (1)
       Thiocystis (1)
       Thioflavicoccus (1)
       Marichromatium (1)
       Tenderia (1)
       Nitrosoglobus (1)
       Thiodictyon (1)
       Alkalilimnicola (1)
       Halorhodospira (2)
       Thioalkalivibrio (5)
       Spiribacter (2)
       Ectothiorhodospira (1)
       Acidihalobacter (1)
       Halothiobacillus (2)
       Wenzhouxiangella (1)
       Woeseia (1)
       Granulosicoccus (1)
       Hahella (1)
       Chromohalobacter (1)
       Halomonas (12)
       Portiera (9)
       Carsonella (7)
       Evansia (1)
       Halotalea (1)
       Cobetia (1)
       Kushneria (2)
       Alcanivorax (5)
       Ketobacter (1)
       Kangiella (4)
       Marinomonas (3)
       Thalassolituus (2)
       Oleispira (1)
       Marinobacterium (1)
       Bacterioplanes (1)
       Gynuella (1)
       Reinekea (1)
       Oleiphilus (1)
       Aeromonas (20)
         aha  Aeromonas hydrophila subsp. hydrophila ATCC 7966
         ahy  Aeromonas hydrophila ML09-119
         ahd  Aeromonas hydrophila YL17
         ahr  Aeromonas hydrophila AL09-71
         ahp  Aeromonas hydrophila pc104A
         ahj  Aeromonas hydrophila J-1
         ahh  Aeromonas hydrophila AL06-06
         ahi  Aeromonas hydrophila AH10
         asa  Aeromonas salmonicida subsp. salmonicida A449
         aeo  Aeromonas salmonicida O23A
         avr  Aeromonas veronii B565
         avo  Aeromonas veronii TH0426
         amed  Aeromonas media
         asr  Aeromonas schubertii
         aaj  Aeromonas aquatica
         adh  Aeromonas dhakensis
         acav  Aeromonas caviae
         aem  Aeromonas sp. CU5
         aea  Aeromonas sp. ASNIH3
         arv  Aeromonas rivipollensis
Human pathogen, Animal pathogen
 
 
 
 
 
Fish pathogen
 
Fish pathogen
Dissimilatory arsenate reduction
Human pathogen, Animal pathogen
Fish pathogen
 
Fish pathogen
 
 
 
 
 
 
       Tolumonas (1)
       Oceanimonas (1)
       Oceanisphaera (2)
       Zobellella (1)
       Dichelobacter (1)
       Gilliamella (1)
       Frischella (1)
       Steroidobacter (1)
       Immundisolibacter (1)
       Sulfuricaulis (1)
       Sulfurifustis (1)
       Acidiferrobacter (1)
       Salinisphaera (1)
       Thiolapillus (1)
       Sedimenticola (1)
       Thioglobus (2)
       Pseudohongiella (1)
       Thiohalobacter (1)
       Ruthia (1)
       Unclassified Gammaproteobacteria (7)
     Betaproteobacteria (368)
       Neisseria (22)
         nme  Neisseria meningitidis MC58 (serogroup B)
         nmp  Neisseria meningitidis alpha710 (serogroup B)
         nmh  Neisseria meningitidis H44/76 (serogroup B)
         nmd  Neisseria meningitidis G2136 (serogroup B)
         nmm  Neisseria meningitidis M01-240149 (serogroup B)
         nms  Neisseria meningitidis M01-240355 (serogroup B)
         nmq  Neisseria meningitidis M04-240196 (serogroup B)
         nmz  Neisseria meningitidis NZ-05/33 (serogroup B)
         nma  Neisseria meningitidis Z2491 (serogroup A)
         nmw  Neisseria meningitidis WUE 2594 (serogroup A)
         nmx  Neisseria meningitidis 510612  (serogroup A)
         nmc  Neisseria meningitidis FAM18 (serogroup C)
         nmn  Neisseria meningitidis 053442 (serogroup C)
         nmt  Neisseria meningitidis 8013 (serogroup C)
         nmi  Neisseria meningitidis alpha14 (cnl strain)
         ngo  Neisseria gonorrhoeae FA 1090
         ngk  Neisseria gonorrhoeae NCCP11945
         nla  Neisseria lactamica
         nel  Neisseria elongata
         nwe  Neisseria weaveri
         nsi  Neisseria sicca
         nmj  Neisseria mucosa
Human pathogen
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
Human pathogen
Human pathogen
 
 
 
 
 
       Snodgrassella (1)
       Kingella (1)
       Vitreoscilla (2)
       Eikenella (1)
       Simonsiella (1)
       Unclassified Neisseriaceae (1)
       Chromobacterium (4)
         cvi  Chromobacterium violaceum
         cvc  Chromobacterium vaccinii
         chro  Chromobacterium sp. ATCC 53434
         chri  Chromobacterium sp. IIBBL 112-1
Human pathogen
 
 
 
       Laribacter (1)
         lhk  Laribacter hongkongensis
Human pathogen
       Pseudogulbenkiania (1)
       Jeongeupia (1)
       Aquaspirillum (1)
       Ralstonia (11)
       Cupriavidus (11)
       Burkholderia (88)
         bma  Burkholderia mallei ATCC 23344
         bmv  Burkholderia mallei SAVP1
         bml  Burkholderia mallei NCTC 10229
         bmn  Burkholderia mallei NCTC 10247
         bmal  Burkholderia mallei 23344
         bmae  Burkholderia mallei 6
         bmaq  Burkholderia mallei BMQ
         bmai  Burkholderia mallei 2000031063
         bmaf  Burkholderia mallei FMH 23344
         bmaz  Burkholderia mallei NCTC 10247
         bmab  Burkholderia mallei 2002734299
         bps  Burkholderia pseudomallei K96243
         bpm  Burkholderia pseudomallei 1710b
         bpl  Burkholderia pseudomallei 1106a
         bpd  Burkholderia pseudomallei 668
         bpr  Burkholderia pseudomallei MSHR346
         bpse  Burkholderia pseudomallei MSHR305
         bpsm  Burkholderia pseudomallei MSHR511
         bpsu  Burkholderia pseudomallei MSHR146
         bpsd  Burkholderia pseudomallei MSHR520
         bpz  Burkholderia pseudomallei 1026b
         bpq  Burkholderia pseudomallei BPC006
         bpk  Burkholderia pseudomallei NCTC 13179
         bpsh  Burkholderia pseudomallei HBPUB10134a
         bpsa  Burkholderia pseudomallei NAU35A-3
         bpso  Burkholderia pseudomallei A79A
         but  Burkholderia pseudomallei TSV202
         bte  Burkholderia thailandensis E264
         btq  Burkholderia thailandensis 2002721723
         btj  Burkholderia thailandensis E444
         btz  Burkholderia thailandensis H0587
         btd  Burkholderia thailandensis MSMB121
         btv  Burkholderia thailandensis MSMB59
         bthe  Burkholderia thailandensis E254
         bthm  Burkholderia thailandensis USAMRU Malaysia #20
         btha  Burkholderia thailandensis 2003015869
         bthl  Burkholderia thailandensis 2002721643
         bok  Burkholderia oklahomensis E0147
         boc  Burkholderia oklahomensis C6786
         bvi  Burkholderia vietnamiensis G4
         bve  Burkholderia vietnamiensis LMG 10929
         bur  Burkholderia lata
         bcn  Burkholderia cenocepacia AU1054
         bch  Burkholderia cenocepacia HI2424
         bcm  Burkholderia cenocepacia MC0-3
         bcj  Burkholderia cenocepacia J2315
         bcen  Burkholderia cenocepacia DDS 22E-1
         bcew  Burkholderia cenocepacia DWS 37E-2
         bceo  Burkholderia cenocepacia H111
         bam  Burkholderia ambifaria AMMD
         bac  Burkholderia ambifaria MC40-6
         bmu  Burkholderia multivorans ATCC 17616 (JGI)
         bmj  Burkholderia multivorans ATCC 17616 (Tohoku)
         bmk  Burkholderia multivorans DDS 15A-1
         bmul  Burkholderia multivorans ATCC BAA-247
         bct  Burkholderia cepacia GG4
         bced  Burkholderia cepacia DDS 7H-2
         bcep  Burkholderia cepacia ATCC 25416
         bdl  Burkholderia dolosa
         bpyr  Burkholderia pyrrocinia
         bcon  Burkholderia contaminans
         bub  Burkholderia ubonensis
         bdf  Burkholderia diffusa
         blat  Burkholderia latens
         btei  Burkholderia territorii
         bsem  Burkholderia seminalis
         bpsl  Burkholderia pseudomultivorans
         bmec  Burkholderia metallica
         bstg  Burkholderia stagnalis
         bstl  Burkholderia stabilis
         bgl  Burkholderia glumae BGR1
         bgp  Burkholderia glumae PG1
         bgu  Burkholderia glumae LMG 2196 = ATCC 33617
         bug  Burkholderia sp. CCGE1001
         bge  Burkholderia sp. CCGE1002
         bgf  Burkholderia sp. CCGE1003
         bgd  Burkholderia gladioli BSR3
         bgo  Burkholderia gladioli ATCC 10248
         byi  Burkholderia sp. YI23
         buk  Burkholderia sp. KJ006
         buo  Burkholderia insecticola
         bue  Burkholderia sp. RPE67
         bul  Burkholderia sp. 2002721687
         buq  Burkholderia sp. HB1
         bpla  Burkholderia plantarii
         bud  Burkholderia sp. Bp5365
         buz  Burkholderia sp. OLGA172
         bum  Burkholderia sp. PAMC 26561
Human pathogen, Animal pathogen
 
Animal pathogen
Human pathogen, Animal pathogen
 
 
 
 
 
 
 
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen
Human pathogen
 
 
 
Human pathogen, Animal pathogen
Human pathogen
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Human pathogen, Animal pathogen, Plant pathogen
Human pathogen
Human pathogen, Plant pathogen
Human pathogen, Opportunistic pathogen
 
 
Human pathogen
 
 
 
 
 
 
Plant pathogen
Plant pathogen
 
 
 
 
 
 
 
 
 
 
 
 
 
Plant pathogen
 
 
 
Plant endosymbiont
 
 
 
 
 
 
 
 
 
 
 
 
 
       Paraburkholderia (14)
       Polynucleobacter (4)
       Pandoraea (12)
       Paucimonas (1)
       Hydromonas (1)
       Bordetella (23)
         bpe  Bordetella pertussis Tohama I
         bpc  Bordetella pertussis CS
         bper  Bordetella pertussis 18323
         bpet  Bordetella pertussis B1917
         bpeu  Bordetella pertussis 137
         bpa  Bordetella parapertussis 12822
         bpar  Bordetella parapertussis Bpp5
         bbr  Bordetella bronchiseptica RB50
         bbm  Bordetella bronchiseptica MO149
         bbh  Bordetella bronchiseptica 253
         bbx  Bordetella bronchiseptica S798
         bpt  Bordetella petrii
         bav  Bordetella avium
         bho  Bordetella holmesii ATCC 51541
         bhm  Bordetella holmesii 44057
         bhz  Bordetella hinzii
         btrm  Bordetella trematum
         bbro  Bordetella bronchialis
         bfz  Bordetella flabilis
         bpdz  Bordetella pseudohinzii
         boh  Bordetella sp. H567
         bgm  Bordetella genomosp. 13
         boz  Bordetella sp. HZ20
Human pathogen, Vaccine
Human pathogen
 
Human pathogen
 
Human pathogen
 
Animal pathogen, Human pathogen
 
 
Animal pathogen
Human pathogen, Denitrification
Animal pathogen
 
 
 
 
Human pathogen
Human pathogen
 
 
 
 
       Achromobacter (9)
         axy  Achromobacter xylosoxidans A8
         axo  Achromobacter xylosoxidans NH44784-1996
         axn  Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
         axs  Achromobacter xylosoxidans C54
         axx  Achromobacter xylosoxidans NCTC10807
         adt  Achromobacter denitrificans
         ais  Achromobacter insolitus
         asw  Achromobacter spanius
         achr  Achromobacter sp. AONIH1
 
Human pathogen
 
 
 
 
 
 
 
       Taylorella (5)
       Pusillimonas (1)
       Advenella (2)
       Castellaniella (1)
       Basilea (1)
       Alcaligenes (2)
       Paenalcaligenes (1)
       Orrella (1)
       Oligella (1)
       Rhodoferax (4)
       Polaromonas (2)
       Acidovorax (10)
       Verminephrobacter (1)
       Delftia (4)
       Variovorax (6)
       Comamonas (4)
       Alicycliphilus (2)
       Ramlibacter (1)
       Symbiobacter (1)
       Ottowia (2)
       Limnohabitans (2)
       Hydrogenophaga (3)
       Diaphorobacter (1)
       Simplicispira (1)
       Melaminivora (2)
       Unclassified Comamonadaceae (2)
       Methylibium (1)
       Herminiimonas (1)
       Janthinobacterium (6)
       Herbaspirillum (5)
       Zinderia (1)
       Collimonas (3)
       Massilia (6)
       Oxalobacter (1)
       Leptothrix (1)
       Thiomonas (2)
       Rubrivivax (2)
       Roseateles (1)
       Paucibacter (1)
       Mitsuaria (1)
       Rhizobacter (1)
       Aquabacterium (1)
       Unclassified Burkholderiales (3)
       Nitrosomonas (6)
       Nitrosospira (2)
       Sulfuritalea (1)
       Methyloversatilis (1)
       Thiobacillus (1)
       Methylobacillus (1)
       Methylotenera (2)
       Methylovorus (2)
       Methylopumilus (2)
       Methylophilus (1)
       Sideroxydans (1)
       Gallionella (1)
       Sulfuricella (1)
       Sulfuriferula (1)
       Aromatoleum (1)
       Azospira (1)
       Rugosibacter (1)
       Unclassified Rhodocyclaceae (1)
       Dechloromonas (1)
       Azoarcus (6)
       Thauera (5)
       Unclassified Zoogloeaceae (1)
       Accumulibacter (1)
       Tremblaya (3)
       Kinetoplastibacterium (8)
       Profftella (1)
       Nasuia (1)
       Unclassified Betaproteobacteria (3)
     Epsilonproteobacteria (160)
       Helicobacter (74)
         hpy  Helicobacter pylori 26695
         heo  Helicobacter pylori 26695
         hpj  Helicobacter pylori J99
         hpa  Helicobacter pylori HPAG1
         hps  Helicobacter pylori Shi470
         hhp  Helicobacter pylori Shi112
         hhq  Helicobacter pylori Shi169
         hhr  Helicobacter pylori Shi417
         hpg  Helicobacter pylori G27
         hpp  Helicobacter pylori P12
         hpb  Helicobacter pylori B38
         hpl  Helicobacter pylori B8
         hpc  Helicobacter pylori PeCan4
         hca  Helicobacter pylori PeCan18
         hpm  Helicobacter pylori SJM180
         hpe  Helicobacter pylori ELS37
         hpo  Helicobacter pylori 35A
         hpi  Helicobacter pylori 908
         hpq  Helicobacter pylori 2017
         hpw  Helicobacter pylori 2018
         hpu  Helicobacter pylori Cuz20
         hef  Helicobacter pylori F16
         hpf  Helicobacter pylori F30
         heq  Helicobacter pylori F32
         hex  Helicobacter pylori F57
         hpt  Helicobacter pylori Sat464
         hpz  Helicobacter pylori 52
         hpv  Helicobacter pylori v225d
         hpx  Helicobacter pylori 83
         hen  Helicobacter pylori SNT49
         hph  Helicobacter pylori Lithuania75
         heg  Helicobacter pylori Gambia94/24
         hpn  Helicobacter pylori India7
         hep  Helicobacter pylori Puno120
         heu  Helicobacter pylori Puno135
         hes  Helicobacter pylori SouthAfrica7
         hpys  Helicobacter pylori SouthAfrica20
         hcn  Helicobacter pylori HUP-B14
         hpd  Helicobacter pylori 51
         hey  Helicobacter pylori XZ274
         her  Helicobacter pylori Rif1
         hei  Helicobacter pylori Rif2
         hpya  Helicobacter pylori Aklavik117
         hpyk  Helicobacter pylori Aklavik86
         hpyo  Helicobacter pylori OK113
         hpyl  Helicobacter pylori OK310
         hpyb  Helicobacter pylori oki102
         hpyc  Helicobacter pylori oki112
         hpyd  Helicobacter pylori oki128
         hpye  Helicobacter pylori oki154
         hpyf  Helicobacter pylori oki422
         hpyg  Helicobacter pylori oki673
         hpyh  Helicobacter pylori oki828
         hpyj  Helicobacter pylori oki898
         hpyr  Helicobacter pylori UM032
         hpyi  Helicobacter pylori UM037
         hpyu  Helicobacter pylori UM066
         hpym  Helicobacter pylori UM299
         hem  Helicobacter pylori UM298
         heb  Helicobacter pylori BM012A
         hez  Helicobacter pylori BM012S
         hhe  Helicobacter hepaticus
         hac  Helicobacter acinonychis
         hms  Helicobacter mustelae
         hfe  Helicobacter felis
         hbi  Helicobacter bizzozeronii
         hce  Helicobacter cetorum MIT 00-7128
         hcm  Helicobacter cetorum MIT 99-5656
         hcp  Helicobacter cinaedi PAGU611
         hcb  Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
         hhm  Helicobacter heilmannii
         hty  Helicobacter typhlonius
         hbl  Helicobacter bilis
         had  Helicobacter apodemus
Human pathogen
 
Human pathogen
Human pathogen
Human pathogen
 
 
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen, Animal pathogen
 
 
 
 
 
Human pathogen
Human pathogen
Human pathogen
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
Human pathogen
 
 
 
 
 
 
 
 
 
 
 
Human pathogen
 
 
 
 
 
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
 
 
 
Human pathogen
Human pathogen
Animal pathogen
Animal pathogen
Animal pathogen
 
 
Animal pathogen
 
Human pathogen
Human pathogen
Animal pathogen, Human pathogen
 
 
 
       Wolinella (1)
       Sulfurimonas (2)
       Sulfuricurvum (2)
       Campylobacter (64)
         cje  Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
         cjb  Campylobacter jejuni subsp. jejuni NCTC 11168-BN148
         cjj  Campylobacter jejuni subsp. jejuni 81-176
         cju  Campylobacter jejuni subsp. jejuni 81116
         cjn  Campylobacter jejuni subsp. jejuni ICDCCJ07001
         cji  Campylobacter jejuni subsp. jejuni IA3902
         cjm  Campylobacter jejuni subsp. jejuni M1
         cjs  Campylobacter jejuni subsp. jejuni S3
         cjp  Campylobacter jejuni subsp. jejuni PT14
         cjej  Campylobacter jejuni subsp. jejuni 00-2426
         cjeu  Campylobacter jejuni subsp. jejuni 00-2538
         cjen  Campylobacter jejuni subsp. jejuni 00-2544
         cjei  Campylobacter jejuni subsp. jejuni 00-2425
         cjer  Campylobacter jejuni subsp. jejuni R14
         cjv  Campylobacter jejuni subsp. jejuni MTVDSCj20
         cjy  Campylobacter jejuni subsp. jejuni YH001
         cjq  Campylobacter jejuni subsp. jejuni 35925B2
         cjl  Campylobacter jejuni subsp. jejuni 00-1597
         cjw  Campylobacter jejuni subsp. jejuni 00-6200
         cjr  Campylobacter jejuni RM1221
         cjd  Campylobacter jejuni subsp. doylei 269.97
         cjz  Campylobacter jejuni 32488
         cjx  Campylobacter jejuni 4031
         cff  Campylobacter fetus subsp. fetus 82-40
         cft  Campylobacter fetus subsp. fetus 04/554
         cfv  Campylobacter fetus subsp. venerealis cfvi03/293
         cfx  Campylobacter fetus subsp. venerealis 97/608
         cfz  Campylobacter fetus subsp. venerealis 84-112
         camp  Campylobacter fetus subsp. testudinum 03-427
         cfp  Campylobacter fetus subsp. testudinum pet-3
         ccv  Campylobacter curvus
         cha  Campylobacter hominis
         cco  Campylobacter concisus 13826
         ccoc  Campylobacter concisus ATCC 33237
         cla  Campylobacter lari RM2100
         clr  Campylobacter lari RM16701
         clm  Campylobacter lari RM16712
         clq  Campylobacter lari CCUG 22395
         cln  Campylobacter lari NCTC 11845
         cll  Campylobacter lari subsp. concheus LMG 11760
         ccol  Campylobacter coli 76339
         ccc  Campylobacter coli CVM N29710
         ccq  Campylobacter coli 15-537360
         ccf  Campylobacter coli RM1875
         ccy  Campylobacter coli RM4661
         ccoi  Campylobacter coli RM5611
         ccof  Campylobacter coli FB1
         ccoo  Campylobacter coli OR12
         caj  Campylobacter iguaniorum
         cis  Campylobacter insulaenigrae
         cvo  Campylobacter volucris
         cpel  Campylobacter peloridis
         camr  Campylobacter sp. RM16704
         csm  Campylobacter subantarcticus LMG 24374
         csf  Campylobacter subantarcticus LMG 24377
         cgra  Campylobacter gracilis
         cure  Campylobacter ureolyticus
         chyo  Campylobacter hyointestinalis
         chv  Campylobacter helveticus
         cspf  Campylobacter sputorum
         cpin  Campylobacter pinnipediorum
         ccun  Campylobacter cuniculorum
         clx  Campylobacter lanienae
         cavi  Campylobacter avium
Human pathogen
 
Human pathogen
Human pathogen, Animal pathogen
Human pathogen
 
Human pathogen
 
 
 
 
 
 
 
 
Human pathogen
 
 
 
Human pathogen
Human pathogen
 
 
Human pathogen, Animal pathogen
 
Animal pathogen
 
 
 
 
Human pathogen
 
Human pathogen
 
Human pathogen, Animal pathogen
 
 
 
 
 
 
Human pathogen
Human pathogen
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Arcobacter (6)
         abu  Arcobacter butzleri RM4018
         abt  Arcobacter butzleri ED-1
         abl  Arcobacter butzleri 7h1h
         ant  Arcobacter nitrofigilis
         arc  Arcobacter sp. L
         alp  Arcobacter sp. LPB0137
Human pathogen
 
 
 
 
 
       Sulfurospirillum (6)
       Nitratifractor (1)
       Nitratiruptor (1)
       Sulfurovum (2)
       Nautilia (1)
     Deltaproteobacteria (90)
     Alphaproteobacteria (548)
       Rickettsia (46)
         rpr  Rickettsia prowazekii Madrid E
         rpo  Rickettsia prowazekii BuV67-CWPP
         rpw  Rickettsia prowazekii Chernikova
         rpz  Rickettsia prowazekii Dachau
         rpg  Rickettsia prowazekii GvV257
         rps  Rickettsia prowazekii Katsinyian
         rpv  Rickettsia prowazekii RpGvF24
         rpq  Rickettsia prowazekii Rp22
         rpl  Rickettsia prowazekii Breinl
         rpn  Rickettsia prowazekii NMRC Madrid E
         rty  Rickettsia typhi Wilmington
         rtt  Rickettsia typhi TH1527
         rtb  Rickettsia typhi B9991CWPP
         rcm  Rickettsia canadensis McKiel
         rcc  Rickettsia canadensis CA410
         rbe  Rickettsia bellii RML369-C
         rbo  Rickettsia bellii OSU 85-389
         rco  Rickettsia conorii
         rfe  Rickettsia felis
         rak  Rickettsia akari
         rri  Rickettsia rickettsii Sheila Smith
         rrj  Rickettsia rickettsii Iowa
         rra  Rickettsia rickettsii Arizona
         rrc  Rickettsia rickettsii Colombia
         rrh  Rickettsia rickettsii Hauke
         rrb  Rickettsia rickettsii Brazil
         rrn  Rickettsia rickettsii Hino
         rrp  Rickettsia rickettsii Hlp#2
         rrm  Rickettsia rickettsii Morgan
         rrr  Rickettsia rickettsii R
         rms  Rickettsia massiliae MTU5
         rmi  Rickettsia massiliae AZT80
         rpk  Rickettsia peacockii
         raf  Rickettsia africae
         rhe  Rickettsia heilongjiangensis
         rja  Rickettsia japonica
         rsv  Rickettsia slovaca 13-B
         rsw  Rickettsia slovaca D-CWPP
         rph  Rickettsia philipii
         rau  Rickettsia australis
         rmo  Rickettsia montanensis
         rpp  Rickettsia parkeri
         rre  Rickettsia rhipicephali
         ram  Rickettsia amblyommatis GAT-30V
         rab  Rickettsia amblyommatis Ac37
         rmc  Rickettsia monacensis
Human pathogen
 
 
 
 
 
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
 
 
 
 
Human pathogen
Human pathogen, Animal pathogen
 
Human pathogen
 
 
 
 
 
 
 
 
Animal pathogen
Human pathogen
 
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
 
 
 
 
 
 
 
       Orientia (2)
         ots  Orientia tsutsugamushi Boryong
         ott  Orientia tsutsugamushi Ikeda
Human pathogen
Human pathogen
       Phycorickettsia (1)
       Wolbachia (8)
       Anaplasma (9)
         ama  Anaplasma marginale St. Maries
         amf  Anaplasma marginale Florida
         amw  Anaplasma marginale Dawn
         amp  Anaplasma marginale Gypsy Plains
         acn  Anaplasma centrale
         aph  Anaplasma phagocytophilum HZ
         apy  Anaplasma phagocytophilum HZ2
         apd  Anaplasma phagocytophilum Dog2
         apha  Anaplasma phagocytophilum JM
Animal pathogen
Animal pathogen
 
 
Animal pathogen, Vaccine for animal
Human pathogen
 
 
 
       Ehrlichia (14)
         eru  Ehrlichia ruminantium Welgevonden (South Africa)
         erw  Ehrlichia ruminantium Welgevonden (France)
         erg  Ehrlichia ruminantium Gardel
         ecn  Ehrlichia canis
         ech  Ehrlichia chaffeensis Arkansas
         echa  Ehrlichia chaffeensis Heartland
         echj  Ehrlichia chaffeensis Jax
         echl  Ehrlichia chaffeensis Liberty
         echs  Ehrlichia chaffeensis Osceola
         echv  Ehrlichia chaffeensis Saint Vincent
         echw  Ehrlichia chaffeensis Wakulla
         echp  Ehrlichia chaffeensis West Paces
         emr  Ehrlichia muris
         ehh  Ehrlichia sp. HF
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Human pathogen
 
 
 
 
 
 
 
Animal pathogen
 
       Neorickettsia (3)
         nse  Neorickettsia sennetsu
         nri  Neorickettsia risticii
         nhm  Neorickettsia helminthoeca
Human pathogen
Animal pathogen
 
       Midichloria (1)
       Fokinia (1)
       Unclassified Rickettsiales (1)
       Paracaedibacter (1)
       Paracaedimonas (1)
       Nucleicultrix (1)
       Unclassified Holosporaceae (1)
       Mesorhizobium (8)
       Chelativorans (1)
       Hoeflea (1)
       Aminobacter (2)
       Phyllobacterium (1)
       Parvibaculum (1)
       Sinorhizobium (15)
       Ensifer (3)
       Agrobacterium (8)
       Rhizobium (20)
       Neorhizobium (2)
       Liberibacter (7)
       Shinella (1)
       Brucella (42)
         bme  Brucella melitensis bv. 1 16M
         bmel  Brucella melitensis bv. 1 16M
         bmi  Brucella melitensis ATCC 23457
         bmz  Brucella melitensis M28
         bmg  Brucella melitensis M5-90
         bmw  Brucella melitensis NI
         bmee  Brucella melitensis bv. 3 Ether
         bmf  Brucella abortus 2308
         bmb  Brucella abortus bv. 1 9-941
         bmc  Brucella abortus S19
         baa  Brucella abortus A13334
         babo  Brucella abortus bv. 2 86/8/59
         babr  Brucella abortus bv. 6 870
         babt  Brucella abortus 63 75
         babb  Brucella abortus BDW
         babu  Brucella abortus bv. 9 C68
         babs  Brucella abortus BER
         babc  Brucella abortus NCTC 10505
         bms  Brucella suis 1330
         bsi  Brucella suis 1330
         bsf  Brucella suis bv. 1
         bsui  Brucella suis bv. 2 Bs143CITA
         bsup  Brucella suis bv. 2 PT09143
         bsuv  Brucella suis bv. 2 PT09172
         bsuc  Brucella suis bv. 2 Bs364CITA
         bmt  Brucella suis ATCC 23445
         bsz  Brucella suis bv. 3
         bsv  Brucella suis VBI22
         bsw  Brucella suis ZW043
         bsg  Brucella suis ZW046
         bov  Brucella ovis
         bcs  Brucella canis ATCC 23365
         bsk  Brucella canis HSK A52141
         bol  Brucella canis Oliveri
         bcar  Brucella canis RM6/66
         bcas  Brucella canis SVA13
         bmr  Brucella microti
         bpp  Brucella pinnipedialis B2/94
         bpv  Brucella pinnipedialis 6/566
         bcet  Brucella ceti TE10759-12
         bcee  Brucella ceti TE28753-12
         bvl  Brucella vulpis
Human pathogen, Animal pathogen, Denitrification
 
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen, Denitrification
Animal pathogen, Vaccine for animal, Denitrification
Animal pathogen, Denitrification
 
Human pathogen, Animal pathogen, Denitrification
Human pathogen, Animal pathogen, Denitrification
Animal pathogen, Vaccine for animal, Denitrification
Animal pathogen, Denitrification
 
 
 
 
 
 
 
Human pathogen, Animal pathogen, Denitrification
Denitrification
 
Animal pathogen
Animal pathogen
Animal pathogen
 
Human pathogen, Animal pathogen, Denitrification
 
Animal pathogen, Denitrification
 
 
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen, Denitrification
Animal pathogen, Denitrification
 
 
Animal pathogen
Animal pathogen, Denitrification
Animal pathogen, Denitrification
 
Animal pathogen, Denitrification
 
 
       Ochrobactrum (4)
         oan  Ochrobactrum anthropi ATCC 49188
         oah  Ochrobactrum anthropi OAB
         ops  Ochrobactrum pseudogrignonense
         och  Ochrobactrum sp. A44
Human pathogen, Denitrification
 
 
 
       Bradyrhizobium (13)
       Rhodopseudomonas (7)
       Nitrobacter (2)
       Oligotropha (3)
       Bosea (3)
       Variibacter (1)
       Bartonella (20)
         bhe  Bartonella henselae Houston-1
         bhn  Bartonella henselae BM1374163
         bhs  Bartonella henselae BM1374165
         bqu  Bartonella quintana Toulouse
         bqr  Bartonella quintana RM-11
         bbk  Bartonella bacilliformis
         btr  Bartonella tribocorum CIP 105476
         btx  Bartonella tribocorum BM1374166
         bgr  Bartonella grahamii
         bcd  Bartonella clarridgeiae
         baus  Bartonella australis
         bvn  Bartonella vinsonii
         banc  Bartonella ancashensis
         bapi  Bartonella apis
         bart  Bartonella sp. JB15
         bara  Bartonella sp. A1379B
         barw  Bartonella sp. WD16.2
         barr  Bartonella sp. Raccoon60
         baro  Bartonella sp. 1-1C
         barj  Bartonella sp. JB63
Human pathogen
 
 
Human pathogen
 
Human pathogen
Animal pathogen
 
Human pathogen, Animal pathogen
 
 
 
Human pathogen
 
 
 
 
 
 
 
       Xanthobacter (1)
       Azorhizobium (1)
       Starkeya (1)
       Methylorubrum (6)
       Methylobacterium (10)
       Microvirga (2)
       Beijerinckia (1)
       Methylocella (1)
       Chelatococcus (2)
       Hyphomicrobium (4)
       Rhodomicrobium (1)
       Pelagibacterium (1)
       Filomicrobium (2)
       Devosia (2)
       Blastochloris (1)
       Rhodoplanes (1)
       Methylocystis (2)
       Methylosinus (1)
       Martelella (3)
       Aureimonas (1)
       Hodgkinia (4)
       Methyloceanibacter (1)
       Tokpelaia (1)
       Pseudorhodoplanes (1)
       Hartmannibacter (1)
       Unclassified Rhizobiales (1)
       Caulobacter (6)
       Phenylobacterium (2)
       Brevundimonas (6)
       Asticcacaulis (1)
       Unclassified Caulobacteraceae (1)
       Ruegeria (2)
       Epibacterium (1)
       Rhodobacter (6)
       Jannaschia (1)
       Roseobacter (2)
       Paracoccus (9)
       Dinoroseobacter (1)
       Ketogulonicigenium (3)
       Pseudovibrio (1)
       Phaeobacter (5)
       Octadecabacter (3)
       Leisingera (1)
       Roseibacterium (1)
       Planktomarina (1)
       Celeribacter (4)
       Marinovum (1)
       Confluentimicrobium (1)
       Rhodovulum (3)
       Pannonibacter (1)
       Halocynthiibacter (1)
       Labrenzia (3)
       Defluviimonas (1)
       Yangia (2)
       Sulfitobacter (3)
       Donghicola (1)
       Salipiger (1)
       Tateyamaria (1)
       Pelagibaca (1)
       Thioclava (1)
       Roseovarius (2)
       Yoonia (1)
       Antarctobacter (1)
       Rhodobaca (1)
       Sagittula (1)
       Thalassococcus (1)
       Gemmobacter (1)
       Unclassified Rhodobacteraceae (1)
       Maricaulis (1)
       Hyphomonas (1)
       Hirschia (1)
       Hyphomonadaceae (1)
       Zymomonas (8)
       Novosphingobium (5)
       Sphingopyxis (11)
       Sphingomonas (15)
       Sphingobium (13)
       Citromicrobium (1)
       Sphingorhabdus (3)
       Blastomonas (1)
       Rhizorhabdus (1)
       Erythrobacter (6)
       Altererythrobacter (5)
       Croceicoccus (2)
       Porphyrobacter (3)
       Gluconobacter (4)
       Granulobacter (4)
         gbe  Granulibacter bethesdensis CGDNIH1
         gbh  Granulibacter bethesdensis CGDNIH2
         gbc  Granulibacter bethesdensis CGDNIH3
         gbs  Granulibacter bethesdensis CGDNIH4
Human pathogen
 
 
 
       Acidiphilium (2)
       Gluconacetobacter (2)
       Komagataeibacter (4)
       Acetobacter (17)
       Asaia (1)
       Kozakia (1)
       Roseomonas (2)
       Neoasaia (1)
       Rhodospirillum (3)
       Pararhodospirillum (1)
       Magnetospirillum (4)
       Azospirillum (9)
       Tistrella (1)
       Endolissoclinum (2)
       Thalassospira (2)
       Magnetospira (1)
       Haematospirillum (1)
       Nitrospirillum (1)
       Niveispirillum (1)
       Parvularcula (1)
       Magnetococcus (1)
       Pelagibacter (2)
       Unclassified Pelagibacteraceae (2)
       Micavibrio (2)
       Polymorphum (1)
       Phreatobacter (1)
       Puniceispirillum (1)
     Other proteobacteria (7)
     Firmicutes - Bacilli (719)
       Bacillus (133)
         bsu  Bacillus subtilis subsp. subtilis 168
         bsr  Bacillus subtilis subsp. subtilis RO-NN-1
         bsl  Bacillus subtilis subsp. subtilis BSP1
         bsh  Bacillus subtilis subsp. subtilis 6051-HGW
         bsy  Bacillus subtilis subsp. subtilis BAB-1
         bsut  Bacillus subtilis subsp. subtilis AG1839
         bsul  Bacillus subtilis subsp. subtilis JH642
         bsus  Bacillus subtilis subsp. subtilis OH 131.1
         bss  Bacillus subtilis subsp. spizizenii W23
         bst  Bacillus subtilis subsp. spizizenii TU-B-10
         bso  Bacillus subtilis subsp. natto BEST195
         bsn  Bacillus subtilis BSn5
         bsq  Bacillus subtilis QB928
         bsx  Bacillus subtilis XF-1
         bsp  Bacillus subtilis PY79
         bli  Bacillus licheniformis ATCC 14580
         bld  Bacillus licheniformis DSM 13 = ATCC 14580
         blh  Bacillus paralicheniformis
         bay  Bacillus velezensis FZB42
         baq  Bacillus velezensis CAU B946
         bya  Bacillus velezensis YAU B9601-Y2
         bamp  Bacillus velezensis AS43.3
         baml  Bacillus velezensis UCMB5036
         bama  Bacillus velezensis UCMB5033
         bamn  Bacillus velezensis UCMB5113
         bamb  Bacillus velezensis NAU-B3
         bamt  Bacillus velezensis TrigoCor1448
         bamy  Bacillus velezensis SQR9
         bmp  Bacillus velezensis
         bao  Bacillus amyloliquefaciens DSM 7
         baz  Bacillus amyloliquefaciens TA208
         bql  Bacillus amyloliquefaciens LL3
         bxh  Bacillus amyloliquefaciens XH7
         bqy  Bacillus amyloliquefaciens Y2
         bami  Bacillus amyloliquefaciens IT-45
         bamc  Bacillus amyloliquefaciens CC178
         bamf  Bacillus amyloliquefaciens LFB112
         bae  Bacillus atrophaeus 1942
         batr  Bacillus atrophaeus NRS 1221A
         bvm  Bacillus vallismortis
         bha  Bacillus halodurans
         ban  Bacillus anthracis Ames
         bar  Bacillus anthracis Ames Ancestor
         bat  Bacillus anthracis Sterne
         bah  Bacillus anthracis CDC 684
         bai  Bacillus anthracis A0248
         bax  Bacillus anthracis H9401
         bant  Bacillus anthracis A16
         banr  Bacillus anthracis A16R
         bans  Bacillus anthracis SVA11
         banh  Bacillus anthracis HYU01
         banv  Bacillus anthracis Vollum
         bce  Bacillus cereus ATCC 14579
         bca  Bacillus cereus ATCC 10987
         bcz  Bacillus cereus E33L
         bcr  Bacillus cereus AH187
         bcb  Bacillus cereus B4264
         bcu  Bacillus cereus AH820
         bcg  Bacillus cereus G9842
         bcq  Bacillus cereus Q1
         bcx  Bacillus cereus 03BB102
         bal  Bacillus cereus biovar anthracis CI
         bnc  Bacillus cereus NC7401
         bcf  Bacillus cereus F837/76
         bcer  Bacillus cereus FRI-35
         bcef  Bacillus cereus FT9
         bcy  Bacillus cytotoxicus
         btk  Bacillus thuringiensis serovar konkukian 97-27
         btl  Bacillus thuringiensis Al Hakam
         btb  Bacillus thuringiensis BMB171
         btt  Bacillus thuringiensis serovar kurstaki HD73
         bthr  Bacillus thuringiensis serovar kurstaki YBT-1520
         bthi  Bacillus thuringiensis serovar kurstaki HD-1
         btc  Bacillus thuringiensis serovar chinensis CT-43
         btf  Bacillus thuringiensis serovar finitimus YBT-020
         btm  Bacillus thuringiensis MC28
         btg  Bacillus thuringiensis Bt407
         bti  Bacillus thuringiensis HD-771
         btn  Bacillus thuringiensis HD-789
         btht  Bacillus thuringiensis serovar thuringiensis IS5056
         bthu  Bacillus thuringiensis YBT-1518
         btw  Bacillus thuringiensis HD1011
         bthy  Bacillus thuringiensis YWC2-8
         bwe  Bacillus mycoides KBAB4
         bww  Bacillus mycoides WSBC 10204
         bmyc  Bacillus mycoides 219298
         bmyo  Bacillus mycoides ATCC 6462
         bty  Bacillus toyonensis
         bcl  Bacillus clausii
         bpu  Bacillus pumilus SAFR-032
         bpum  Bacillus pumilus MTCC B6033
         bpus  Bacillus pumilus SH-B9
         bpf  Bacillus pseudofirmus
         bmq  Bacillus megaterium QM B1551
         bmd  Bacillus megaterium DSM 319
         bmh  Bacillus megaterium WSH-002
         bmeg  Bacillus megaterium NBRC 15308 = ATCC 14581
         bco  Bacillus cellulosilyticus
         bck  Bacillus coagulans 2-6
         bag  Bacillus coagulans 36D1
         bcoa  Bacillus coagulans DSM 1 = ATCC 7050
         bjs  Bacillus sp. JS
         baci  Bacillus sp. 1NLA3E
         bif  Bacillus infantis
         ble  Bacillus lehensis
         bmet  Bacillus methanolicus
         gst  Bacillus sp. X1(2014)
         bacw  Bacillus sp. WP8
         bacp  Bacillus sp. Pc3
         bacb  Bacillus sp. BH072
         bby  Bacillus bombysepticus
         baco  Bacillus sp. OxB-1
         bacy  Bacillus sp. YP1
         bacl  Bacillus sp. BS34A
         balm  Bacillus sp. LM 4-2
         beo  Bacillus endophyticus
         bsm  Bacillus smithii
         bsj  Bacillus simplex
         bon  Bacillus oceanisediminis
         bgy  Bacillus glycinifermentans
         bfx  Bacillus flexus
         bgi  Bacillus gibsonii
         bwh  Bacillus weihaiensis
         bxi  Bacillus xiamenensis
         bhk  Bacillus horikoshii
         bkw  Bacillus krulwichiae
         bbev  Bacillus beveridgei
         bko  Bacillus kochii
         balt  Bacillus altitudinis
         bacs  Bacillus sp. SDLI1
         bmur  Bacillus muralis
         bsaf  Bacillus safensis
         bit  Bacillus intestinalis
Methylotroph, Plant pathogen
Methylotroph, Plant pathogen
Methylotroph, Plant pathogen
Methylotroph, Plant pathogen
Methylotroph, Plant pathogen
 
 
Plant pathogen
Methylotroph, Plant pathogen
Methylotroph, Plant pathogen
Methylotroph, Plant pathogen
Methylotroph, Plant pathogen
Methylotroph, Plant pathogen
Methylotroph, Plant pathogen
Methylotroph, Plant pathogen
Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
 
 
 
Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
 
 
 
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Vaccine
 
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
 
 
Human pathogen, Animal pathogen
 
 
Human pathogen
Human pathogen
Human pathogen, Animal pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
Human pathogen
Human pathogen, Animal pathogen
Human pathogen
 
 
 
Human pathogen
Human pathogen
Insect pathogen
Insect pathogen
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Methylotroph
Methylotroph
 
 
 
Methylotroph, Plant pathogen
Methylotroph, Plant pathogen
Methylotroph, Plant pathogen
Plant pathogen
 
 
Methylotroph
 
Methylotroph
 
Methylotroph
 
 
 
 
 
 
Insect pathogen
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Oceanobacillus (1)
       Geobacillus (18)
       Parageobacillus (2)
       Anoxybacillus (5)
       Amphibacillus (1)
       Lysinibacillus (6)
       Halobacillus (2)
       Terribacillus (1)
       Virgibacillus (6)
       Lentibacillus (1)
       Fictibacillus (2)
       Salimicrobium (1)
       Aeribacillus (1)
       Unclassified Sporolactobacillaceae (1)
       Staphylococcus (86)
         sau  Staphylococcus aureus subsp. aureus N315 (MRSA/VSSA)
         sav  Staphylococcus aureus subsp. aureus Mu50 (MRSA/VISA)
         saw  Staphylococcus aureus subsp. aureus Mu3 (MRSA/hetero-VISA)
         sah  Staphylococcus aureus subsp. aureus JH1 (MRSA/VSSA)
         saj  Staphylococcus aureus subsp. aureus JH9 (MRSA/VRSA)
         sam  Staphylococcus aureus subsp. aureus MW2 (CA-MRSA)
         sas  Staphylococcus aureus subsp. aureus MSSA476 (MSSA)
         sar  Staphylococcus aureus subsp. aureus MRSA252 (MRSA)
         sac  Staphylococcus aureus subsp. aureus COL (MRSA)
         sax  Staphylococcus aureus subsp. aureus USA300_TCH1516 (CA-MSSA)
         saa  Staphylococcus aureus subsp. aureus USA300_FPR3757 (CA-MRSA)
         sao  Staphylococcus aureus subsp. aureus NCTC8325
         sae  Staphylococcus aureus subsp. aureus Newman
         sad  Staphylococcus aureus subsp. aureus ED98
         suu  Staphylococcus aureus subsp. aureus M013 (CA-MRSA)
         suv  Staphylococcus aureus subsp. aureus VC40
         sue  Staphylococcus aureus subsp. aureus ED133
         suj  Staphylococcus aureus subsp. aureus JKD6159 (CA-MRSA)
         suk  Staphylococcus aureus subsp. aureus JKD6008 (MRSA/VISA)
         suc  Staphylococcus aureus subsp. aureus ECT-R 2
         sut  Staphylococcus aureus subsp. aureus T0131 (MRSA)
         suq  Staphylococcus aureus subsp. aureus TCH60
         suz  Staphylococcus aureus subsp. aureus 11819-97 (CA-MRSA)
         sud  Staphylococcus aureus subsp. aureus 71193
         sux  Staphylococcus aureus subsp. aureus HO 5096 0412
         suw  Staphylococcus aureus subsp. aureus TW20 (MRSA)
         sug  Staphylococcus aureus subsp. aureus ST398 (MRSA)
         suf  Staphylococcus aureus subsp. aureus LGA251
         saua  Staphylococcus aureus subsp. aureus 55/2053
         saue  Staphylococcus aureus subsp. aureus 6850 (MSSA)
         saun  Staphylococcus aureus subsp. aureus CN1 (CA-MRSA)
         saus  Staphylococcus aureus subsp. aureus SA40 (CA-MRSA)
         sauu  Staphylococcus aureus subsp. aureus SA957 (CA-MRSA)
         saug  Staphylococcus aureus subsp. aureus SA268 (CA-MRSA)
         sauz  Staphylococcus aureus subsp. aureus Z172 (MRSA/VISA)
         saut  Staphylococcus aureus subsp. aureus ST228/10388 (MRSA)
         sauj  Staphylococcus aureus subsp. aureus ST228/10497 (MRSA)
         sauk  Staphylococcus aureus subsp. aureus ST228/15532 (MRSA)
         sauq  Staphylococcus aureus subsp. aureus ST228/16035 (MRSA)
         sauv  Staphylococcus aureus subsp. aureus ST228/18412 (MRSA)
         sauw  Staphylococcus aureus subsp. aureus ST228/16125 (MRSA)
         saux  Staphylococcus aureus subsp. aureus ST228/18341 (MRSA)
         sauy  Staphylococcus aureus subsp. aureus ST228/18583 (MRSA)
         sauf  Staphylococcus aureus subsp. aureus FDAARGOS_5
         sab  Staphylococcus aureus RF122
         suy  Staphylococcus aureus 04-02981
         saub  Staphylococcus aureus 08BA02176
         saum  Staphylococcus aureus M1
         sauc  Staphylococcus aureus CA-347
         saur  Staphylococcus aureus Bmb9393
         saui  Staphylococcus aureus USA300-ISMMS1
         saud  Staphylococcus aureus 502A
         sams  Staphylococcus aureus MS4
         suh  Staphylococcus argenteus
         sep  Staphylococcus epidermidis ATCC 12228
         ser  Staphylococcus epidermidis RP62A
         sepp  Staphylococcus epidermidis PM221
         seps  Staphylococcus epidermidis SEI
         sha  Staphylococcus haemolyticus JCSC1435
         shh  Staphylococcus haemolyticus Sh29/312/L2
         ssp  Staphylococcus saprophyticus
         sca  Staphylococcus carnosus
         slg  Staphylococcus lugdunensis HKU09-01
         sln  Staphylococcus lugdunensis N920143
         ssd  Staphylococcus pseudintermedius HKU10-03
         sdt  Staphylococcus pseudintermedius ED99
         swa  Staphylococcus warneri
         spas  Staphylococcus pasteuri
         sxy  Staphylococcus xylosus HKUOPL8
         sxl  Staphylococcus xylosus SMQ-121
         sxo  Staphylococcus xylosus C2a
         shu  Staphylococcus hyicus
         scap  Staphylococcus capitis
         ssch  Staphylococcus schleiferi 1360-13
         sscz  Staphylococcus schleiferi 2317-03
         sagq  Staphylococcus agnetis
         seqo  Staphylococcus equorum
         ssif  Staphylococcus simulans
         scv  Staphylococcus condimenti
         spet  Staphylococcus pettenkoferi
         slz  Staphylococcus lutrae
         scoh  Staphylococcus cohnii
         sscu  Staphylococcus sciuri
         snl  Staphylococcus nepalensis
         skl  Staphylococcus kloosii
         sfq  Staphylococcus felis
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Animal pathogen, Methylotroph
Animal pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Methylotroph
Human pathogen, Methylotroph
Methylotroph
Human pathogen, Methylotroph
Methylotroph
Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Methylotroph
Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen
Human pathogen, Methylotroph
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
Human pathogen, Animal pathogen, Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
Methylotroph
 
 
 
Methylotroph
Animal pathogen, Methylotroph
Human pathogen, Methylotroph
Animal pathogen
 
Human pathogen, Methylotroph
 
Human pathogen, Methylotroph
Methylotroph
Human pathogen, Methylotroph
Human pathogen, Methylotroph
Human pathogen, Animal pathogen, Methylotroph
Animal pathogen, Methylotroph
Methylotroph
Methylotroph
 
 
 
Animal pathogen
 
Animal pathogen
Animal pathogen
 
 
 
 
 
 
 
 
 
 
 
       Macrococcus (3)
       Salinicoccus (1)
       Auricoccucs (1)
       Listeria (45)
         lmo  Listeria monocytogenes EGD-e (serotype 1/2a)
         lmn  Listeria monocytogenes 08-5578 (serotype 1/2a)
         lmy  Listeria monocytogenes 08-5923 (serotype 1/2a)
         lmt  Listeria monocytogenes 10403S (serotype 1/2a)
         lmoc  Listeria monocytogenes SLCC5850 (serotype 1/2a)
         lmoe  Listeria monocytogenes La111 (serotype 1/2a)
         lmob  Listeria monocytogenes N53-1 (serotype 1/2a)
         lmod  Listeria monocytogenes EGD (serotype 1/2a)
         lmow  Listeria monocytogenes WSLC1001 (serotype 1/2a)
         lmoq  Listeria monocytogenes 6179 (serotype 1/2a)
         lmr  Listeria monocytogenes R479a (serotype 1/2a)
         lmom  Listeria monocytogenes Lm60 (serotype 1/2a)
         lmf  Listeria monocytogenes F2365 (serotype 4b)
         lmc  Listeria monocytogenes CLIP 80459 (serotype 4b)
         lmog  Listeria monocytogenes serotype 4b LL195
         lmp  Listeria monocytogenes 07PF0776 (serotype 4b)
         lmol  Listeria monocytogenes L312 (serotype 4b)
         lmoj  Listeria monocytogenes J1816 (serotype 4b)
         lmoz  Listeria monocytogenes J1-220 (serotype 4b)
         lmox  Listeria monocytogenes WSLC1042 (serotype 4b)
         lmh  Listeria monocytogenes HCC23 (serotype 4a)
         lmq  Listeria monocytogenes M7 (serotype 4a)
         lml  Listeria monocytogenes L99 (serotype 4a)
         lmg  Listeria monocytogenes FSL R2-561
         lms  Listeria monocytogenes Finland 1998
         lmj  Listeria monocytogenes J0161
         lmw  Listeria monocytogenes SLCC2755 (serotype 1/2b)
         lmx  Listeria monocytogenes SLCC2372 (serotype 1/2c)
         lmz  Listeria monocytogenes serotype 7 SLCC2482
         lmon  Listeria monocytogenes SLCC2376 (serotype 4c)
         lmos  Listeria monocytogenes SLCC7179 (serotype 3a)
         lmoo  Listeria monocytogenes SLCC2378 (serotype 4e)
         lmoy  Listeria monocytogenes SLCC2479 (serotype 3c)
         lmot  Listeria monocytogenes SLCC2540 (serotype 3b)
         lmoa  Listeria monocytogenes ATCC 19117 (serotype 4d)
         lmok  Listeria monocytogenes NE dc2014
         lmv  Listeria monocytogenes CFSAN006122
         lin  Listeria innocua (serotype 6a)
         lwe  Listeria welshimeri
         lsg  Listeria seeligeri
         liv  Listeria ivanovii subsp. ivanovii PAM 55
         lii  Listeria ivanovii subsp. ivanovii WSLC 3010
         liw  Listeria ivanovii WSLC3009
         lia  Listeria ivanovii subsp. londoniensis WSLC 30167
         lio  Listeria ivanovii subsp. londoniensis WSLC 30151
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
 
Human pathogen, Animal pathogen
Human pathogen
Human pathogen
Human pathogen
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen
Human pathogen
 
 
 
 
 
 
 
 
Human pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
 
 
 
Human pathogen
Human pathogen, Animal pathogen
 
 
 
 
 
Animal pathogen
 
 
 
 
       Brochothrix (1)
       Exiguobacterium (5)
       Gemella (2)
       Brevibacillus (3)
       Paenibacillus (42)
       Thermobacillus (1)
       Aneurinibacillus (2)
       Alicyclobacillus (2)
       Kyrpidia (2)
       Tumebacillus (2)
       Solibacillus (3)
       Planococcus (11)
       Jeotgalibacillus (1)
       Kurthia (1)
       Sporosarcina (4)
       Rummeliibacillus (1)
       Novibacillus (1)
       Laceyella (1)
       Lactococcus (17)
         lla  Lactococcus lactis subsp. lactis Il1403
         llk  Lactococcus lactis subsp. lactis KF147
         llt  Lactococcus lactis subsp. lactis CV56
         lls  Lactococcus lactis subsp. lactis IO-1
         lld  Lactococcus lactis subsp. lactis KLDS 4.0325
         llx  Lactococcus lactis subsp. lactis NCDO 2118
         llc  Lactococcus lactis subsp. cremoris SK11
         llm  Lactococcus lactis subsp. cremoris MG1363
         llr  Lactococcus lactis subsp. cremoris A76
         lln  Lactococcus lactis subsp. cremoris NZ9000
         lli  Lactococcus lactis subsp. cremoris UC509.9
         llw  Lactococcus lactis subsp. cremoris KW2
         llj  Lactococcus lactis AI06
         lgr  Lactococcus garvieae ATCC 49156
         lgv  Lactococcus garvieae Lg2
         lpk  Lactococcus piscium
         lrn  Lactococcus raffinolactis
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Fish pathogen, Human pathogen, Animal pathogen
 
 
       Streptococcus (142)
         spy  Streptococcus pyogenes M1 GAS (serotype M1)
         spz  Streptococcus pyogenes MGAS5005 (serotype M1)
         spym  Streptococcus pyogenes M1 476 (serotype M1)
         spya  Streptococcus pyogenes A20 (serotype M1)
         spm  Streptococcus pyogenes MGAS8232 (serotype M18)
         spg  Streptococcus pyogenes MGAS315 (serotype M3)
         sps  Streptococcus pyogenes SSI-1 (serotype M3)
         sph  Streptococcus pyogenes MGAS10270 (serotype M2)
         spi  Streptococcus pyogenes MGAS10750 (serotype M4)
         spj  Streptococcus pyogenes MGAS2096 (serotype M12)
         spk  Streptococcus pyogenes MGAS9429 (serotype M12)
         spf  Streptococcus pyogenes Manfredo (serotype M5)
         spa  Streptococcus pyogenes MGAS10394 (serotype M6)
         spb  Streptococcus pyogenes MGAS6180 (serotype M28)
         stg  Streptococcus pyogenes MGAS15252 (serotype M59)
         stx  Streptococcus pyogenes MGAS1882 (serotype M59)
         soz  Streptococcus pyogenes NZ131 (serotype M49)
         stz  Streptococcus pyogenes Alab49 (serotype M53)
         spyh  Streptococcus pyogenes HSC5 (serotype M14)
         spyo  Streptococcus pyogenes STAB901 (serotype M44)
         spn  Streptococcus pneumoniae TIGR4 (virulent serotype 4)
         spd  Streptococcus pneumoniae D39 (virulent serotype 2)
         spr  Streptococcus pneumoniae R6 (avirulent serotype 2)
         spw  Streptococcus pneumoniae CGSP14 (serotype 14)
         sjj  Streptococcus pneumoniae JJA (serotype 14)
         snv  Streptococcus pneumoniae INV200 (serotype 14)
         spx  Streptococcus pneumoniae G54 (serotype 19F)
         snt  Streptococcus pneumoniae Taiwan19F-14 (serotype 19F)
         snd  Streptococcus pneumoniae ST556 (serotype 19F)
         spnn  Streptococcus pneumoniae A026 (serotype 19F)
         sne  Streptococcus pneumoniae ATCC 700669 (serotype 23F ST81 lineage)
         spv  Streptococcus pneumoniae Hungary19A 6 (serotype 19A)
         snc  Streptococcus pneumoniae TCH8431/19A (serotype 19A)
         snm  Streptococcus pneumoniae 70585 (serotype 5)
         spp  Streptococcus pneumoniae P1031 (serotype 1)
         sni  Streptococcus pneumoniae INV104 (serotype 1)
         spng  Streptococcus pneumoniae gamPNI0373 (virulent serotype 1)
         snb  Streptococcus pneumoniae 670-6B (serotype 6B)
         snp  Streptococcus pneumoniae AP200 (serotype 11A)
         snx  Streptococcus pneumoniae OXC141 (serotype 3)
         snu  Streptococcus pneumoniae SPNA45 (serotype 3)
         spne  Streptococcus pneumoniae SPN034156 (serotype 3)
         spnu  Streptococcus pneumoniae SPN034183 (serotype 3)
         spnm  Streptococcus pneumoniae SPN994038 (serotype 3)
         spno  Streptococcus pneumoniae SPN994039 (serotype 3)
         sag  Streptococcus agalactiae 2603 (serotype V)
         san  Streptococcus agalactiae NEM316 (serotype III)
         sak  Streptococcus agalactiae A909 (serotype Ia)
         sgc  Streptococcus agalactiae GD201008-001 (serotype Ia)
         sags  Streptococcus agalactiae SA20
         sagl  Streptococcus agalactiae 2-22 (serotype Ib)
         sagm  Streptococcus agalactiae 09mas018883
         sagi  Streptococcus agalactiae ILRI005
         sagr  Streptococcus agalactiae ILRI112
         sagp  Streptococcus agalactiae 138P
         sagc  Streptococcus agalactiae 138spar
         sagt  Streptococcus agalactiae COH1
         sage  Streptococcus agalactiae NGBS061
         sagg  Streptococcus agalactiae NGBS572
         sagn  Streptococcus agalactiae CNCTC 10/84
         smu  Streptococcus mutans UA159 (serotype c)
         smc  Streptococcus mutans NN2025 (serotype c)
         smut  Streptococcus mutans GS-5 (serotype c)
         smj  Streptococcus mutans LJ23 (serotype k)
         smua  Streptococcus mutans UA159-FR
         stc  Streptococcus thermophilus CNRZ1066
         stl  Streptococcus thermophilus LMG 18311
         ste  Streptococcus thermophilus LMD-9
         stn  Streptococcus thermophilus ND03
         stu  Streptococcus thermophilus JIM 8232
         stw  Streptococcus thermophilus MN-ZLW-002
         sthe  Streptococcus thermophilus ASCC 1275
         sths  Streptococcus thermophilus S9
         ssa  Streptococcus sanguinis
         ssb  Streptococcus suis BM407 (serotype 2)
         ssu  Streptococcus suis 05ZYH33 (serotype 2)
         ssv  Streptococcus suis 98HAH33 (serotype 2)
         ssi  Streptococcus suis P1/7 (serotype 2)
         sss  Streptococcus suis SC84 (serotype 2)
         ssf  Streptococcus suis A7 (serotype 2)
         ssw  Streptococcus suis GZ1 (serotype 2)
         sup  Streptococcus suis S735 (serotype 2)
         ssus  Streptococcus suis SC070731 (serotype 2)
         sst  Streptococcus suis ST3 (serotype 3)
         ssuy  Streptococcus suis YB51 (serotype 3)
         ssk  Streptococcus suis D12 (serotype 9)
         ssq  Streptococcus suis D9 (serotype 7)
         sui  Streptococcus suis JS14 (serotype 14)
         suo  Streptococcus suis SS12 (serotype 1/2)
         srp  Streptococcus suis ST1 (serotype 1)
         ssut  Streptococcus suis TL13 (serotype 16)
         ssui  Streptococcus suis T15
         sgo  Streptococcus gordonii
         sez  Streptococcus equi subsp. zooepidemicus MGCS10565
         seq  Streptococcus equi subsp. zooepidemicus H70
         sezo  Streptococcus equi subsp. zooepidemicus ATCC 35246
         sequ  Streptococcus equi subsp. zooepidemicus CY
         seu  Streptococcus equi subsp. equi 4047
         sub  Streptococcus uberis
         sds  Streptococcus dysgalactiae subsp. equisimilis GGS_124
         sdg  Streptococcus dysgalactiae subsp. equisimilis ATCC 12394
         sda  Streptococcus dysgalactiae subsp. equisimilis RE378
         sdc  Streptococcus dysgalactiae subsp. equisimilis AC-2713
         sdq  Streptococcus dysgalactiae subsp. equisimilis 167
         sga  Streptococcus gallolyticus UCN34
         sgg  Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069
         sgt  Streptococcus gallolyticus subsp. gallolyticus ATCC 43143
         smb  Streptococcus mitis
         sor  Streptococcus oralis
         stk  Streptococcus parauberis
         stb  Streptococcus pasteurianus
         scp  Streptococcus parasanguinis ATCC 15912
         scf  Streptococcus parasanguinis FW213
         ssr  Streptococcus salivarius CCHSS3
         stf  Streptococcus salivarius 57.I
         stj  Streptococcus salivarius JIM8777
         strs  Streptococcus salivarius NCTC 8618
         ssah  Streptococcus salivarius HSISS4
         std  Streptococcus pseudopneumoniae
         smn  Streptococcus macedonicus
         sif  Streptococcus infantarius
         sie  Streptococcus intermedius JTH08
         sib  Streptococcus intermedius B196
         siu  Streptococcus intermedius C270
         sang  Streptococcus anginosus C1051
         sanc  Streptococcus anginosus C238
         sans  Streptococcus anginosus SA1
         scg  Streptococcus constellatus subsp. pharyngis C1050
         scon  Streptococcus constellatus subsp. pharyngis C232
         scos  Streptococcus constellatus subsp. pharyngis C818
         soi  Streptococcus cristatus
         sik  Streptococcus iniae SF1
         siq  Streptococcus iniae ISET0901
         sio  Streptococcus iniae ISNO
         siz  Streptococcus iniae SFST01-82
         slu  Streptococcus lutetiensis
         sig  Streptococcus sp. I-G2
         sip  Streptococcus sp. I-P16
         stv  Streptococcus sp. VT 162
         spat  Streptococcus pantholopis
         stra  Streptococcus sp. A12
         strn  Streptococcus sp. NPS 308
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen, Animal pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
Human pathogen
Human pathogen
Human pathogen, Animal pathogen
 
Human pathogen
 
 
Human pathogen, Animal pathogen
 
Human pathogen
 
Human pathogen
 
 
 
 
 
Human pathogen
 
 
 
 
 
 
 
 
Human pathogen
Human pathogen
Human pathogen, Animal pathogen
Fish pathogen
 
Fish pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Fish pathogen
 
 
 
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
 
 
 
 
 
 
 
Human pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Animal pathogen
Human pathogen, Animal pathogen
Animal pathogen
Human pathogen, Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
 
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
 
 
Human pathogen
Animal pathogen, Human pathogen
Animal pathogen
Animal pathogen
 
Animal pathogen
Animal pathogen
Animal pathogen
Human pathogen
 
 
Human pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen
 
 
Animal pathogen
 
 
Human pathogen
Human pathogen
Human pathogen
 
 
 
Human pathogen
 
 
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
Fish pathogen
Fish pathogen
 
 
 
 
 
Human pathogen
 
 
Human pathogen
       Lactobacillus (93)
       Pediococcus (6)
       Enterococcus (20)
         efa  Enterococcus faecalis V583
         efl  Enterococcus faecalis 62
         efi  Enterococcus faecalis OG1RF
         efd  Enterococcus faecalis D32
         efs  Enterococcus faecalis Symbioflor 1
         efn  Enterococcus faecalis DENG1
         efq  Enterococcus faecalis ATCC 29212
         ene  Enterococcus faecalis 7L76
         efc  Enterococcus faecium Aus0004
         efau  Enterococcus faecium Aus0085
         efu  Enterococcus faecium DO
         efm  Enterococcus faecium NRRL B-2354
         eft  Enterococcus faecium T110
         ehr  Enterococcus hirae
         ecas  Enterococcus casseliflavus
         emu  Enterococcus mundtii
         edu  Enterococcus durans
         ega  Enterococcus gallinarum
         ess  Enterococcus silesiacus
         eth  Enterococcus thailandicus
Human pathogen
 
 
 
 
Human pathogen
 
 
Human pathogen
Human pathogen
Human pathogen
 
 
 
 
 
 
 
 
 
       Melissococcus (2)
       Tetragenococcus (1)
       Vagococcus (2)
       Oenococcus (1)
       Leuconostoc (12)
       Weissella (7)
       Aerococcus (7)
       Carnobacterium (4)
       Marinilactibacillus (1)
       Jeotgalibaca (2)
     Firmicutes - Clostridia (194)
       Clostridium (51)
         cac  Clostridium acetobutylicum ATCC 824
         cae  Clostridium acetobutylicum DSM 1731
         cay  Clostridium acetobutylicum EA 2018
         cpe  Clostridium perfringens 13
         cpf  Clostridium perfringens ATCC 13124
         cpr  Clostridium perfringens SM101
         ctc  Clostridium tetani E88
         ctet  Clostridium tetani 12124569
         cno  Clostridium novyi
         cbo  Clostridium botulinum A ATCC 3502
         cba  Clostridium botulinum A ATCC 19397
         cbh  Clostridium botulinum A Hall
         cby  Clostridium botulinum A2
         cbl  Clostridium botulinum A3 Loch Maree
         cbk  Clostridium botulinum B Eklund 17B (NRP)
         cbb  Clostridium botulinum B1 Okra
         cbi  Clostridium botulinum Ba4
         cbn  Clostridium botulinum BKT015925
         cbt  Clostridium botulinum E3
         cbf  Clostridium botulinum F Langeland
         cbm  Clostridium botulinum F 230613
         cbj  Clostridium botulinum H04402 065
         cbe  Clostridium beijerinckii NCIMB 8052
         cbz  Clostridium beijerinckii ATCC 35702
         cbei  Clostridium beijerinckii NCIMB 14988
         ckl  Clostridium kluyveri DSM 555
         ckr  Clostridium kluyveri NBRC 12016
         clj  Clostridium ljungdahlii
         ccb  Clostridium cellulovorans
         cls  Clostridium sp. SY8519
         clb  Clostridium sp. BNL1100
         csr  Clostridium saccharoperbutylacetonicum
         cpas  Clostridium pasteurianum BC1
         cpat  Clostridium pasteurianum DSM 525 = ATCC 6013
         cpae  Clostridium pasteurianum DSM 525 = ATCC 6013
         csb  Clostridium saccharobutylicum
         cah  Clostridium autoethanogenum
         clt  Clostridium bornimense
         cbv  Clostridium baratii
         csq  Clostridium scatologenes
         cld  Clostridium sporogenes
         cace  Clostridium aceticum
         cck  Clostridium carboxidivorans
         cbut  Clostridium butyricum
         ctyk  Clostridium tyrobutyricum
         ceu  Clostridium estertheticum
         ctae  Clostridium taeniosporum
         cfm  Clostridium formicaceticum
         cchv  Clostridium chauvoei
         carg  Clostridium argentinense
         cdrk  Clostridium drakei
Methylotroph
Methylotroph
Methylotroph
Human pathogen, Animal pathogen
Human pathogen
Human pathogen
Human pathogen, Animal pathogen, Vaccine
 
 
Human pathogen, Animal pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Animal pathogen
Human pathogen
Human pathogen
Human pathogen, Animal pathogen
Human pathogen
Methylotroph
 
 
 
 
 
 
 
 
Methylotroph
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Animal pathogen
 
 
       Alkaliphilus (2)
       Arthromitus (4)
       Geosporobacter (1)
       Ruminiclostridium (11)
       Ethanoligenens (1)
       Ruminococcus (5)
       Unclassified Ruminococcaceae (1)
       Faecalibacterium (2)
       Mageeibacillus (1)
       Herbivorax (1)
       Fastidiosipila (1)
       Butyrivibrio (3)
       Cellulosilyticum (1)
       Roseburia (3)
       Coprococcus (2)
       Blautia (5)
       Lachnoclostridium (5)
       Anaerostipes (1)
       Herbinix (1)
       Anaerotignum (1)
       Unclassified Lachnospiraceae (3)
       Clostridioides (5)
         cdf  Clostridioides difficile 630
         pdc  Clostridioides difficile 630
         cdc  Clostridioides difficile CD196
         cdl  Clostridioides difficile R20291
         pdf  Clostridioides difficile 630Derm
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
       Peptoclostridium (1)
       Acetoanaerobium (1)
       Filifactor (1)
       Paeniclostridium (1)
       Unclassified Peptostreptococcaceae (1)
       Symbiobacterium (1)
       Syntrophomonas (1)
       Syntrophothermus (1)
       Desulfitobacterium (5)
       Desulfotomaculum (4)
       Desulfofarcimen (1)
       Desulfofundulus (1)
       Desulfallas (1)
       Pelotomaculum (1)
       Desulforudis (1)
       Thermincola (1)
       Syntrophobotulus (1)
       Desulfosporosinus (3)
       Dehalobacter (3)
       Heliobacterium (1)
       Eubacterium (3)
       Acetobacterium (1)
       Oscillibacter (1)
       Thermaerobacter (1)
       Sulfobacillus (2)
       Carboxydocella (1)
       Intestinimonas (1)
       Flavonifractor (1)
       Mogibacterium (1)
       Unclassified Clostridiales (3)
       Caldanaerobacter (1)
       Thermoanaerobacter (8)
       Carboxydothermus (1)
       Tepidanaerobacter (2)
       Moorella (1)
       Ammonifex (1)
       Thermacetogenium (1)
       Caldicellulosiruptor (8)
       Thermosediminibacter (1)
       Thermoanaerobacterium (4)
       Thermodesulfobium (2)
       Mahella (1)
       Natranaerobius (1)
       Halothermothrix (1)
       Halanaerobium (2)
       Acetohalobium (1)
       Halobacteroides (1)
     Firmicutes - Others (29)
       Finegoldia (1)
         fma  Finegoldia magna
Human pathogen
       Anaerococcus (1)
       Parvimonas (1)
       Peptoniphilus (1)
       Gottschalkia (1)
       Veillonella (3)
       Megasphaera (2)
       Dialister (1)
       Selenomonas (5)
       Megamonas (1)
       Pelosinus (2)
       Acidaminococcus (2)
         afn  Acidaminococcus fermentans
         ain  Acidaminococcus intestini
Animal pathogen, Human pathogen
Human pathogen
       Erysipelothrix (3)
         erh  Erysipelothrix rhusiopathiae Fujisawa
         ers  Erysipelothrix rhusiopathiae SY1027
         erl  Erysipelothrix larvae
Animal pathogen, Human pathogen
Animal pathogen
 
       Faecalitalea (1)
       Turicibacter (1)
       Faecalibaculum (1)
       Unclassified Erysipelotrichaceae (1)
       Limnochorda (1)
     Coprothermobacterota (1)
     Tenericutes (141)
       Mycoplasma (90)
         mge  Mycoplasma genitalium G37
         mgu  Mycoplasma genitalium M2288
         mgc  Mycoplasma genitalium M2321
         mgq  Mycoplasma genitalium M6282
         mgx  Mycoplasma genitalium M6320
         mpn  Mycoplasma pneumoniae M129
         mpm  Mycoplasma pneumoniae 309
         mpj  Mycoplasma pneumoniae FH
         mpb  Mycoplasma pneumoniae M129-B7
         mpu  Mycoplasma pulmonis
         mpe  Mycoplasma penetrans
         mga  Mycoplasma gallisepticum R(low)
         mgh  Mycoplasma gallisepticum R(high)
         mgf  Mycoplasma gallisepticum F
         mgn  Mycoplasma gallisepticum NC06_2006.080-5-2P
         mgs  Mycoplasma gallisepticum NC95_13295-2-2P
         mgt  Mycoplasma gallisepticum NY01_2001.047-5-1P
         mgv  Mycoplasma gallisepticum VA94_7994-1-7P
         mgw  Mycoplasma gallisepticum WI01_2001.043-13-2P
         mgac  Mycoplasma gallisepticum CA06_2006.052-5-2P
         mgan  Mycoplasma gallisepticum NC08_2008.031-4-3P
         mgnc  Mycoplasma gallisepticum NC96_1596-4-2P
         mgz  Mycoplasma gallisepticum S6
         mmy  Mycoplasma mycoides subsp. mycoides SC PG1
         mmym  Mycoplasma mycoides subsp. mycoides SC Gladysdale
         mmyi  Mycoplasma mycoides subsp. mycoides izsam_mm5713
         mml  Mycoplasma mycoides subsp. capri LC 95010
         mcp  Mycoplasma capricolum subsp. capricolum ATCC 27343
         mcac  Mycoplasma capricolum subsp. capripneumoniae 9231-Abomsa
         mcap  Mycoplasma capricolum subsp. capripneumoniae F38
         mcar  Mycoplasma capricolum subsp. capripneumoniae ILRI181
         mcai  Mycoplasma capricolum subsp. capripneumoniae 87001
         mlc  Mycoplasma leachii PG50
         mlh  Mycoplasma leachii 99/014/6
         mmo  Mycoplasma mobile
         mhy  Mycoplasma hyopneumoniae 232
         mhj  Mycoplasma hyopneumoniae J
         mhp  Mycoplasma hyopneumoniae 7448
         mhn  Mycoplasma hyopneumoniae 168
         mhyl  Mycoplasma hyopneumoniae 168-L
         mhyo  Mycoplasma hyopneumoniae 7422
         msy  Mycoplasma synoviae 53
         mso  Mycoplasma synoviae ATCC 25204
         maa  Mycoplasma agalactiae PG2
         mal  Mycoplasma agalactiae 5632
         mat  Mycoplasma arthritidis
         mco  Mycoplasma conjunctivae
         mho  Mycoplasma hominis ATCC 23114
         mhom  Mycoplasma hominis ATCC 27545
         mcd  Mycoplasma crocodyli
         mhr  Mycoplasma hyorhinis HUB-1
         mhh  Mycoplasma hyorhinis GDL-1
         mhm  Mycoplasma hyorhinis MCLD
         mhs  Mycoplasma hyorhinis SK76
         mhv  Mycoplasma hyorhinis DBS 1050
         mfr  Mycoplasma fermentans JER
         mfm  Mycoplasma fermentans M64
         mfp  Mycoplasma fermentans PG18
         mbv  Mycoplasma bovis PG45
         mbh  Mycoplasma bovis Hubei-1
         mbi  Mycoplasma bovis HB0801
         mbq  Mycoplasma bovis CQ-W70
         mha  Mycoplasma haemofelis Langford 1
         mhf  Mycoplasma haemofelis Ohio2
         mss  Mycoplasma suis Illinois
         msk  Mycoplasma suis KI3806
         mpf  Mycoplasma putrefaciens KS1
         mput  Mycoplasma putrefaciens Mput9231
         mhe  Mycoplasma haemocanis
         mwe  Mycoplasma wenyonii
         mhl  Candidatus Mycoplasma haemolamae
         mcy  Mycoplasma cynos
         mhb  Candidatus Mycoplasma haemominutum
         mpv  Mycoplasma parvum
         mov  Mycoplasma ovis
         mbc  Mycoplasma bovoculi
         mcr  Mycoplasma californicum ST-6
         mcm  Mycoplasma californicum HAZ160_1
         mgj  Candidatus Mycoplasma girerdii
         mfq  Mycoplasma flocculare
         mcan  Mycoplasma canadense
         myt  Mycoplasma yeatsii
         mds  Mycoplasma dispar
         mgb  Mycoplasma gallinaceum
         mcas  Mycoplasma canis LV
         mck  Mycoplasma canis PG 14
         marg  Mycoplasma arginini
         myg  Mycoplasma sp. (ex Biomphalaria glabrata)
         mpul  Mycoplasma pullorum
         mbov  Mycoplasma bovigenitalium
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
Animal pathogen
Human pathogen
Animal pathogen
Animal pathogen
Animal pathogen, Vaccine for animal
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
 
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
 
Animal pathogen
Animal pathogen
 
Animal pathogen
 
Fish pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
 
Animal pathogen
Animal pathogen
 
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Human pathogen
 
Animal pathogen
Animal pathogen, Human pathogen
Animal pathogen
 
 
 
Human pathogen
Human pathogen
 
Animal pathogen
Animal pathogen
Animal pathogen
 
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
 
Animal pathogen
Animal pathogen
Animal pathogen
 
 
 
Animal pathogen
Animal pathogen
 
Animal pathogen
 
 
Animal pathogen
Animal pathogen
 
Animal pathogen
 
 
Animal pathogen
 
 
Animal pathogen
       Ureaplasma (4)
         uur  Ureaplasma parvum serovar 3 ATCC 700970
         upa  Ureaplasma parvum serovar 3 ATCC 27815
         upr  Ureaplasma parvum serovar 3 SV3F4
         uue  Ureaplasma urealyticum
Human pathogen
Human pathogen
Human pathogen
Human pathogen
       Hepatoplasma (1)
       Phytoplasma (7)
       Acholeplasma (4)
       Mesoplasma (8)
       Entomoplasma (4)
       Spiroplasma (20)
       Izimaplasma (1)
       Unclassified Tenericutes (2)
     Actinobacteria (621)
       Mycobacterium (76)
         mtu  Mycobacterium tuberculosis H37Rv
         mtv  Mycobacterium tuberculosis H37Rv
         mtc  Mycobacterium tuberculosis CDC1551
         mra  Mycobacterium tuberculosis H37Ra
         mtf  Mycobacterium tuberculosis F11
         mtb  Mycobacterium tuberculosis KZN 1435
         mtk  Mycobacterium tuberculosis KZN 4207
         mtz  Mycobacterium tuberculosis KZN 605
         mtg  Mycobacterium tuberculosis RGTB327
         mti  Mycobacterium tuberculosis RGTB423
         mte  Mycobacterium tuberculosis CCDC5079
         mtur  Mycobacterium tuberculosis CCDC5079
         mtl  Mycobacterium tuberculosis CCDC5180
         mto  Mycobacterium tuberculosis CTRI-2
         mtd  Mycobacterium tuberculosis UT205
         mtn  Mycobacterium tuberculosis Erdman = ATCC 35801
         mtj  Mycobacterium tuberculosis Beijing/NITR203
         mtub  Mycobacterium tuberculosis 7199-99
         mtuc  Mycobacterium tuberculosis CAS/NITR204
         mtue  Mycobacterium tuberculosis EAI5/NITR206
         mtx  Mycobacterium tuberculosis EAI5
         mtuh  Mycobacterium tuberculosis Haarlem/NITR202
         mtul  Mycobacterium tuberculosis Haarlem
         mtut  Mycobacterium tuberculosis BT1
         mtuu  Mycobacterium tuberculosis BT2
         mtq  Mycobacterium tuberculosis HKBS1
         mbo  Mycobacterium bovis AF2122/97
         mbb  Mycobacterium bovis BCG Pasteur 1173P2
         mbt  Mycobacterium bovis BCG Tokyo 172
         mbm  Mycobacterium bovis BCG Mexico
         mbk  Mycobacterium bovis BCG Korea 1168P
         mbx  Mycobacterium bovis BCG ATCC 35743
         mbz  Mycobacterium bovis ATCC BAA-935
         maf  Mycobacterium africanum
         mce  Mycobacterium canettii CIPT 140010059
         mcq  Mycobacterium canettii CIPT 140060008
         mcv  Mycobacterium canettii CIPT 140070008
         mcx  Mycobacterium canettii CIPT 140070010
         mcz  Mycobacterium canettii CIPT 140070017
         mmic  Mycobacterium microti
         mle  Mycobacterium leprae TN
         mlb  Mycobacterium leprae Br4923
         mpa  Mycobacterium avium subsp. paratuberculosis K-10
         mao  Mycobacterium avium subsp. paratuberculosis MAP4
         mavi  Mycobacterium avium subsp. paratuberculosis E1
         mavu  Mycobacterium avium subsp. paratuberculosis E93
         mav  Mycobacterium avium 104
         mavd  Mycobacterium avium subsp. avium DJO-44271
         mavr  Mycobacterium avium subsp. avium 2285 (R)
         mava  Mycobacterium avium subsp. avium 2285 (S)
         mit  Mycobacterium intracellulare MOTT-02
         mia  Mycobacterium intracellulare ATCC 13950
         mie  Mycobacterium intracellulare 1956
         mid  Mycobacterium intracellulare subsp. intracellulare
         myo  Mycobacterium intracellulare subsp. yongonense
         mir  Mycobacterium paraintracellulare
         mchi  Mycobacterium chimaera
         mmal  Mycobacterium marseillense
         mlp  Mycobacterium lepraemurium
         msa  Mycobacterium sp. JS623
         mul  Mycobacterium ulcerans
         mmc  Mycobacterium sp. MCS
         mkm  Mycobacterium sp. KMS
         mjl  Mycobacterium sp. JLS
         mmi  Mycobacterium marinum M
         mmae  Mycobacterium marinum E11
         mmm  Mycobacterium sp. MOTT36Y
         mli  Mycobacterium liflandii
         mkn  Mycobacterium kansasii ATCC 12478
         mks  Mycobacterium kansasii 662
         mki  Mycobacterium kansasii 824
         myv  Mycobacterium sp. VKM Ac-1817D
         mye  Mycobacterium sp. EPa45
         mhad  Mycobacterium haemophilum
         myn  Mycobacterium sp. NRRL B-3805
         mdx  Mycobacterium dioxanotrophicus
Human pathogen, Animal pathogen
 
Human pathogen
Human pathogen, Animal pathogen
Human pathogen
Human pathogen
 
 
Human pathogen
Human pathogen
Human pathogen
 
Human pathogen
 
Human pathogen
Human pathogen
Human pathogen
 
Human pathogen
Human pathogen
 
Human pathogen
 
 
 
 
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen, Vaccine
Human pathogen, Animal pathogen, Vaccine
 
 
 
 
Human pathogen
 
 
 
 
 
 
Human pathogen, Animal pathogen
Human pathogen
Animal pathogen
Animal pathogen, Human pathogen
 
 
Human pathogen
 
 
 
Human pathogen
Human pathogen
 
 
 
Human pathogen
Human pathogen
 
Animal pathogen
 
Human pathogen
 
 
 
Human pathogen, Animal pathogen
 
 
Amphibian pathogen
 
 
 
 
 
 
 
 
       Mycolicibacterium (17)
       Mycobacteroides (14)
         mab  Mycobacteroides abscessus ATCC 19977
         mmv  Mycobacteroides abscessus subsp. massiliense GO 06
         mabb  Mycobacteroides abscessus subsp. bolletii 50594
         may  Mycobacteroides abscessus subsp. bolletii MA 1948
         mabo  Mycobacteroides abscessus subsp. bolletii MC1518
         maz  Mycobacteroides abscessus subsp. bolletii 103
         mak  Mycobacteroides abscessus subsp. bolletii MM1513
         mabl  Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300
         mys  Mycobacteroides abscessus DJO-44274
         myc  Mycobacteroides abscessus 4529
         mche  Mycobacteroides chelonae
         miz  Mycobacteroides immunogenum
         mste  Mycobacterium stephanolepidis
         msao  Mycobacteroides saopaulense
Human pathogen
Human pathogen
Human pathogen
 
 
 
 
Human pathogen
 
 
Human pathogen
 
Fish pathogen
 
       Mycolicibacter (2)
         mjd  Mycolicibacter sinensis
         mter  Mycolicibacter terrae
Human pathogen
 
       Hoyosella (1)
       Corynebacterium (95)
         cgl  Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko)
         cgb  Corynebacterium glutamicum ATCC 13032 (Bielefeld)
         cgu  Corynebacterium glutamicum K051
         cgt  Corynebacterium glutamicum R
         cgs  Corynebacterium glutamicum SCgG1
         cgg  Corynebacterium glutamicum SCgG2
         cgm  Corynebacterium glutamicum MB001
         cgj  Corynebacterium glutamicum ATCC 21831
         cgq  Corynebacterium glutamicum AR1
         cgx  Corynebacterium glutamicum B253
         cef  Corynebacterium efficiens
         cdi  Corynebacterium diphtheriae NCTC 13129
         cdp  Corynebacterium diphtheriae 241
         cdh  Corynebacterium diphtheriae INCA 402
         cdt  Corynebacterium diphtheriae HC01
         cde  Corynebacterium diphtheriae HC02
         cdr  Corynebacterium diphtheriae HC03
         cda  Corynebacterium diphtheriae HC04
         cdz  Corynebacterium diphtheriae 31A
         cdb  Corynebacterium diphtheriae BH8
         cds  Corynebacterium diphtheriae C7
         cdd  Corynebacterium diphtheriae CDCE 8392
         cdw  Corynebacterium diphtheriae PW8
         cdv  Corynebacterium diphtheriae VA01
         cdip  Corynebacterium diphtheriae NCTC11397
         cjk  Corynebacterium jeikeium
         cur  Corynebacterium urealyticum DSM 7109
         cua  Corynebacterium urealyticum DSM 7111
         car  Corynebacterium aurimucosum
         ckp  Corynebacterium kroppenstedtii
         cpu  Corynebacterium pseudotuberculosis FRC41
         cpl  Corynebacterium pseudotuberculosis 3/99-5
         cpg  Corynebacterium pseudotuberculosis 316
         cpp  Corynebacterium pseudotuberculosis P54B96
         cpk  Corynebacterium pseudotuberculosis 1002
         cpq  Corynebacterium pseudotuberculosis C231
         cpx  Corynebacterium pseudotuberculosis I19
         cpz  Corynebacterium pseudotuberculosis PAT10
         cor  Corynebacterium pseudotuberculosis 267
         cop  Corynebacterium pseudotuberculosis 31
         cod  Corynebacterium pseudotuberculosis 1/06-A
         cos  Corynebacterium pseudotuberculosis 42/02-A
         coi  Corynebacterium pseudotuberculosis CIP 52.97
         coe  Corynebacterium pseudotuberculosis 258
         cou  Corynebacterium pseudotuberculosis Cp162
         cpse  Corynebacterium pseudotuberculosis 48252
         cpsu  Corynebacterium pseudotuberculosis CS_10
         cpsf  Corynebacterium pseudotuberculosis Ft_2193/67
         crd  Corynebacterium resistens
         cul  Corynebacterium ulcerans BR-AD22
         cuc  Corynebacterium ulcerans 809
         cue  Corynebacterium ulcerans 0102
         cun  Corynebacterium ulcerans 210932
         cus  Corynebacterium ulcerans FRC11
         cuq  Corynebacterium ulcerans 210931
         cuz  Corynebacterium ulcerans 05146
         cuj  Corynebacterium ulcerans 131002
         cva  Corynebacterium variabile
         chn  Corynebacterium halotolerans
         ccn  Corynebacterium callunae
         cter  Corynebacterium terpenotabidum
         cmd  Corynebacterium maris
         caz  Corynebacterium argentoratense
         cfn  Corynebacterium falsenii
         ccg  Corynebacterium casei
         cvt  Corynebacterium vitaeruminis
         cgy  Corynebacterium glyciniphilum
         cax  Corynebacterium atypicum
         cii  Corynebacterium imitans
         cuv  Corynebacterium ureicelerivorans
         coa  Corynebacterium sp. ATCC 6931
         cdo  Corynebacterium doosanense
         chm  Corynebacterium humireducens
         csx  Corynebacterium singulare
         cmq  Corynebacterium marinum
         cku  Corynebacterium kutscheri
         ccj  Corynebacterium camporealensis
         cmv  Corynebacterium mustelae
         cei  Corynebacterium epidermidicanis
         cted  Corynebacterium testudinoris
         cut  Corynebacterium uterequi
         clw  Corynebacterium lactis
         cdx  Corynebacterium deserti
         csp  Corynebacterium simulans
         csta  Corynebacterium stationis
         ccjz  Corynebacterium crudilactis
         cfk  Corynebacterium frankenforstense
         cpho  Corynebacterium phocae
         cfc  Corynebacterium flavescens
         cgv  Corynebacterium glaucum
         cstr  Corynebacterium striatum
         caqu  Corynebacterium aquilae
         csph  Corynebacterium sphenisci
         camg  Corynebacterium ammoniagenes
         bfv  Brevibacterium flavum ZL-1
 
 
 
 
 
 
 
 
 
 
 
Human pathogen
 
 
 
 
 
 
Human pathogen
Human pathogen
 
Human pathogen
Human pathogen
 
 
Human pathogen
Human pathogen
 
Human pathogen
Human pathogen
Human pathogen, Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Animal pathogen
Human pathogen, Animal pathogen
 
Animal pathogen
Human pathogen
Animal pathogen
Human pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen
 
 
 
 
 
 
 
 
Human pathogen
 
 
 
 
 
Human pathogen
 
 
 
 
 
 
Animal pathogen
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Nocardia (8)
         nfa  Nocardia farcinica IFM 10152
         nfr  Nocardia farcinica NCTC11134
         ncy  Nocardia cyriacigeorgica
         nbr  Nocardia brasiliensis
         nno  Nocardia nova
         nsl  Nocardia soli
         nsr  Nocardia seriolae
         ntp  Nocardia terpenica
Human pathogen, Animal pathogen
 
Human pathogen
Human pathogen
 
 
 
 
       Rhodococcus (19)
         rha  Rhodococcus jostii
         rer  Rhodococcus erythropolis PR4
         rey  Rhodococcus erythropolis CCM2595
         reb  Rhodococcus erythropolis BG43
         rop  Rhodococcus opacus B4
         roa  Rhodococcus opacus PD630
         req  Rhodococcus hoagii
         rpy  Rhodococcus pyridinivorans
         rhb  Rhodococcus sp. B7740
         rav  Rhodococcus aetherivorans
         rfa  Rhodococcus fascians
         rhw  Rhodococcus sp. WMMA185
         rhs  Rhodococcus sp. PBTS 2
         rrz  Rhodococcus ruber
         rhu  Rhodococcus sp. PBTS 1
         rqi  Rhodococcus qingshengii
         rhq  Rhodococcus sp. p52
         rhod  Rhodococcus sp. 008
         rrt  Rhodococcus rhodochrous
PCB degrader, Methylotroph
 
 
 
 
 
Human pathogen, Animal pathogen
 
 
 
Plant pathogen
 
Plant pathogen
 
Plant pathogen
 
 
 
 
       Gordonia (7)
         gbr  Gordonia bronchialis
         gpo  Gordonia polyisoprenivorans
         gor  Gordonia sp. KTR9
         goq  Gordonia phthalatica
         gta  Gordonia terrae
         goc  Gordonia sp. YC-JH1
         git  Gordonia iterans
Human pathogen
 
 
 
 
 
 
       Tsukamurella (2)
         tpr  Tsukamurella paurometabola
         tsm  Tsukamurella tyrosinosolvens
Human pathogen
 
       Segniliparus (1)
       Dietzia (5)
       Lawsonella (1)
       Streptomyces (63)
       Kitasatospora (4)
       Streptacidiphilus (1)
       Tropheryma (2)
         twh  Tropheryma whipplei Twist
         tws  Tropheryma whipplei TW08/27
Human pathogen
Human pathogen
       Leifsonia (2)
       Clavibacter (5)
       Microbacterium (11)
       Rhodoluna (2)
       Rathayibacter (3)
       Curtobacterium (2)
       Microterricola (1)
       Frondihabitans (1)
       Agromyces (2)
       Cryobacterium (2)
       Cnuibacter (1)
       Aurantimicrobium (3)
       Pontimonas (1)
       Microcella (1)
       Mycetocola (1)
       Salinibacterium (1)
       Humibacter (1)
       Arthrobacter (17)
       Paenarthrobacter (1)
       Pseudarthrobacter (3)
       Glutamicibacter (2)
       Renibacterium (1)
       Kocuria (3)
       Micrococcus (1)
       Rothia (3)
         rmu  Rothia mucilaginosa
         rdn  Rothia dentocariosa
         raj  Rothia aeria
 
 
Human pathogen
       Sinomonas (1)
       Neomicrococcus (1)
       Beutenbergia (1)
       Brachybacterium (5)
       Dermabacter (1)
       Jonesia (1)
       Kytococcus (1)
       Dermacoccus (1)
       Luteipulveratus (1)
       Xylanimonas (1)
       Isoptericola (2)
       Cellulosimicrobium (2)
       Sanguibacter (1)
       Cellulomonas (4)
       Intrasporangium (1)
       Arsenicicoccus (1)
       Serinicoccus (1)
       Janibacter (1)
       Ornithinimicrobium (1)
       Brevibacterium (2)
       Dermatophilus (1)
       Cutibacterium (14)
         pac  Cutibacterium acnes KPA171202
         pak  Cutibacterium acnes SK137
         pav  Cutibacterium acnes TypeIA2 P.acn17
         pax  Cutibacterium acnes TypeIA2 P.acn31
         paz  Cutibacterium acnes TypeIA2 P.acn33
         paw  Cutibacterium acnes 266
         pad  Cutibacterium acnes subsp. defendens ATCC 11828
         pcn  Cutibacterium acnes 6609
         pacc  Cutibacterium acnes C1
         pach  Cutibacterium acnes HL096PA1
         pacn  Propionibacterium acnes hdn-1
         cacn  Cutibacterium acnes KCOM 1861 (= ChDC B594)
         pra  Cutibacterium avidum
         cgrn  Cutibacterium granulosum
Human pathogen
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
 
 
Human pathogen
 
 
 
 
       Propionibacterium (3)
       Pseudopropionibacterium (1)
       Acidipropionibacterium (3)
       Microlunatus (1)
       Tessaracoccus (4)
       Nocardioides (2)
       Kribbella (1)
       Pimelobacter (1)
       Aeromicrobium (2)
       Micropruina (1)
       Thermobifida (1)
       Nocardiopsis (3)
       Thermomonospora (1)
       Streptosporangium (1)
       Nonomuraea (1)
       Frankia (5)
       Acidothermus (1)
       Nakamurella (1)
       Geodermatophilus (1)
       Blastococcus (1)
       Modestobacter (1)
       Kineococcus (1)
       Saccharopolyspora (1)
       Saccharomonospora (1)
         svi  Saccharomonospora viridis
Human pathogen
       Amycolatopsis (10)
       Pseudonocardia (7)
       Actinosynnema (2)
       Saccharothrix (1)
       Kutzneria (1)
       Kibdelosporangium (1)
       Lentzea (1)
       Actinoalloteichus (5)
       Alloactinosynnema (1)
       Prauserella (1)
       Salinispora (2)
       Micromonospora (2)
       Verrucosispora (1)
       Actinoplanes (5)
       Plantactinospora (3)
       Catenulispora (1)
       Stackebrandtia (1)
       Arcanobacterium (1)
         ahe  Arcanobacterium haemolyticum
Human pathogen, Animal pathogen
       Mobiluncus (1)
       Trueperella (2)
       Actinotignum (2)
       Actinomyces (8)
       Bifidobacterium (54)
       Gardnerella (3)
         gva  Gardnerella vaginalis 409-05
         gvg  Gardnerella vaginalis ATCC 14019
         gvh  Gardnerella vaginalis HMP9231
 
Human pathogen
 
       Scardovia (1)
       Parascardovia (1)
       Thermobispora (1)
       Actinopolyspora (1)
       Planktophila (6)
       Nanopelagicus (3)
       Unclassified Actinobacteria (1)
       Rubrobacter (2)
       Conexibacter (1)
       Acidimicrobium (1)
       Ilumatobacter (1)
       Cryptobacterium (1)
         ccu  Cryptobacterium curtum
Human pathogen
       Slackia (1)
       Eggerthella (2)
         ele  Eggerthella lenta
         eyy  Eggerthella sp. YY7918
Human pathogen
 
       Gordonibacter (1)
       Adlercreutzia (1)
       Denitrobacterium (1)
       Atopobium (1)
       Olsenella (2)
         ols  Olsenella uli
         olo  Olsenella sp. oral taxon 807
Human pathogen
 
       Coriobacterium (1)
       Collinsella (1)
       Unclassified Coriobacteriaceae (1)
     Cyanobacteria (109)
     Melainabacteria (1)
     Chloroflexi (28)
     Deinococcus-Thermus (28)
     Armatimonadetes (2)
     Unclassified Terrabacteria group (1)
     Chlamydiae (118)
       Chlamydia (113)
         ctr  Chlamydia trachomatis D/UW-3/CX
         ctd  Chlamydia trachomatis D-EC
         ctf  Chlamydia trachomatis D-LC
         ctrd  Chlamydia trachomatis D/SotonD1
         ctro  Chlamydia trachomatis D/SotonD5
         ctrt  Chlamydia trachomatis D/SotonD6
         cta  Chlamydia trachomatis A/HAR-13
         cty  Chlamydia trachomatis A2497
         cra  Chlamydia trachomatis A2497
         ctrq  Chlamydia trachomatis A/363
         ctrx  Chlamydia trachomatis A/5291
         ctrz  Chlamydia trachomatis A/7249
         ctrp  Chlamydia trachomatis L1/1322/p2
         ctlj  Chlamydia trachomatis L1/115
         ctlx  Chlamydia trachomatis L1/224
         ctll  Chlamydia trachomatis L1/440/LN
         ctb  Chlamydia trachomatis L2/434/Bu
         ctrr  Chlamydia trachomatis L2/25667R
         ctlf  Chlamydia trachomatis L2/434/Bu(f)
         ctli  Chlamydia trachomatis L2/434/Bu(i)
         ctl  Chlamydia trachomatis L2b/UCH-1/proctitis
         ctru  Chlamydia trachomatis L2b/UCH-2
         ctrl  Chlamydia trachomatis L2b/LST
         ctrv  Chlamydia trachomatis L2b/CV204
         ctrm  Chlamydia trachomatis L2b/Ams1
         ctla  Chlamydia trachomatis L2b/Ams2
         ctlm  Chlamydia trachomatis L2b/Ams3
         ctls  Chlamydia trachomatis L2b/Ams4
         ctlz  Chlamydia trachomatis L2b/Ams5
         ctlc  Chlamydia trachomatis L2b/Canada1
         ctln  Chlamydia trachomatis L2b/Canada2
         ctlb  Chlamydia trachomatis L2b/795
         ctlq  Chlamydia trachomatis L2b/8200/07
         cto  Chlamydia trachomatis L2c
         ctrn  Chlamydia trachomatis L3/404/LN
         ctj  Chlamydia trachomatis B/Jali20/OT
         ctz  Chlamydia trachomatis B/TZ1A828/OT
         ctg  Chlamydia trachomatis E/11023
         ctk  Chlamydia trachomatis E/150
         csw  Chlamydia trachomatis Sweden2
         ces  Chlamydia trachomatis E/SW3
         ctrb  Chlamydia trachomatis E/Bour
         ctre  Chlamydia trachomatis E/SotonE4
         ctrs  Chlamydia trachomatis E/SotonE8
         ctec  Chlamydia trachomatis E/C599
         cfs  Chlamydia trachomatis F/SW4
         cfw  Chlamydia trachomatis F/SW5
         ctfw  Chlamydia trachomatis F/SWFPminus
         ctrf  Chlamydia trachomatis F/SotonF3
         ctch  Chlamydia trachomatis F/11-96
         ctn  Chlamydia trachomatis G/11074
         ctq  Chlamydia trachomatis G/11222
         ctv  Chlamydia trachomatis G/9301
         ctw  Chlamydia trachomatis G/9768
         ctrg  Chlamydia trachomatis G/SotonG1
         ctri  Chlamydia trachomatis IU824
         ctra  Chlamydia trachomatis IU888
         ctrh  Chlamydia trachomatis Ia/SotonIa1
         ctrj  Chlamydia trachomatis Ia/SotonIa3
         ctrk  Chlamydia trachomatis K/SotonK1
         ctjt  Chlamydia trachomatis J/6276tet1
         ctcf  Chlamydia trachomatis RC-F/69
         ctfs  Chlamydia trachomatis RC-F(s)/342
         cthf  Chlamydia trachomatis RC-F(s)/852
         ctcj  Chlamydia trachomatis RC-J/943
         cthj  Chlamydia trachomatis RC-J/953
         ctmj  Chlamydia trachomatis RC-J/966
         cttj  Chlamydia trachomatis RC-J/971
         ctjs  Chlamydia trachomatis RC-J(s)/122
         ctrc  Chlamydia trachomatis RC-L2/55
         ctrw  Chlamydia trachomatis RC-L2(s)/3
         ctry  Chlamydia trachomatis RC-L2(s)/46
         ctct  Chlamydia trachomatis C/TW-3
         cmu  Chlamydia muridarum Nigg
         cmur  Chlamydia muridarum Nigg CM972
         cmn  Chlamydia muridarum Nigg 2 MCR
         cmm  Chlamydia muridarum Nigg3 clone G0.1.1
         cmg  Chlamydia muridarum Nigg3 clone G28.38.1
         cmx  Chlamydia muridarum Nigg3
         cmz  Chlamydia muridarum Nigg3 CMUT3-5
         cpn  Chlamydia pneumoniae CWL029
         cpa  Chlamydia pneumoniae AR39
         cpj  Chlamydia pneumoniae J138
         cpt  Chlamydia pneumoniae TW-183
         clp  Chlamydia pneumoniae LPCoLN
         cpm  Chlamydia pecorum E58
         cpec  Chlamydia pecorum P787
         cpeo  Chlamydia pecorum PV3056/3
         cper  Chlamydia pecorum W73
         chp  Chlamydia psittaci 6BC
         chb  Chlamydia psittaci 6BC
         chs  Chlamydia psittaci 01DC11
         chi  Chlamydia psittaci 02DC15
         cht  Chlamydia psittaci 08DC60
         chc  Chlamydia psittaci C19/98
         chr  Chlamydia psittaci RD1
         cpsc  Chlamydia psittaci CP3
         cpsn  Chlamydia psittaci NJ1
         cpsb  Chlamydia psittaci 84/55
         cpsg  Chlamydia psittaci GR9
         cpsm  Chlamydia psittaci M56
         cpsi  Chlamydia psittaci MN
         cpsv  Chlamydia psittaci VS225
         cpsw  Chlamydia psittaci WC
         cpst  Chlamydia psittaci WS/RT/E30
         cpsd  Chlamydia psittaci 01DC12
         cpsa  Chlamydia psittaci Mat116
         cav  Chlamydia avium
         cca  Chlamydia caviae
         cab  Chlamydia abortus S26/3
         cabo  Chlamydia abortus
         cfe  Chlamydia felis Fe/C-56
         cgz  Chlamydia gallinacea
Human pathogen
 
 
 
 
 
Human pathogen
 
 
 
 
 
 
 
 
 
Human pathogen
 
 
 
Human pathogen
 
 
 
 
 
 
 
 
 
 
 
 
Human pathogen
 
Human pathogen
Human pathogen
 
 
Human pathogen
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Human pathogen
Animal pathogen
 
 
 
 
 
 
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Animal pathogen
Animal pathogen
 
 
 
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
 
 
 
 
 
 
 
 
 
Animal pathogen
 
Animal pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
 
Animal pathogen
 
       Protochlamydia (2)
       Parachlamydia (1)
       Waddlia (1)
         wch  Waddlia chondrophila
Animal pathogen, Human pathogen
       Simkania (1)
         sng  Simkania negevensis
Human pathogen
     Verrucomicrobia (10)
     Planctomycetes (19)
     Kiritimatiellaeota (1)
     Lentisphaerae (1)
     Spirochaetes (77)
       Borreliella (19)
         bbu  Borreliella burgdorferi B31
         bbz  Borreliella burgdorferi ZS7
         bbn  Borreliella burgdorferi N40
         bbj  Borreliella burgdorferi JD1
         bbur  Borrelia burgdorferi CA382
         bga  Borreliella bavariensis PBi
         bgb  Borreliella garinii BgVir
         bgn  Borrelia garinii NMJW1
         bgs  Borreliella garinii SZ
         bgc  Borreliella garinii CIP 103362
         baf  Borrelia afzelii (FLI)
         bafz  Borrelia afzelii (Maryland)
         bafh  Borrelia afzelii HLJ01
         baft  Borreliella afzelii Tom3107
         bafe  Borreliella afzelii K78
         bbs  Borreliella bissettii
         bvt  Borreliella valaisiana
         bchi  Borreliella chilensis
         bmay  Borrelia mayonii
Human pathogen, Animal pathogen
Human pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
 
Human pathogen
Human pathogen
 
 
 
Human pathogen, Animal pathogen
Human pathogen
Human pathogen
 
Human pathogen
Human pathogen
 
 
Human pathogen
       Borrelia (10)
         btu  Borrelia turicatae
         bhr  Borrelia hermsii DAH
         bhi  Borrelia hermsii CC1
         bdu  Borrelia duttonii
         bre  Borrelia recurrentis
         bcw  Borrelia crocidurae
         bmo  Borrelia miyamotoi LB-2001
         bmiy  Borrelia miyamotoi CT14D4
         bpak  Borrelia parkeri
         bane  Borrelia anserina
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
 
Human pathogen
Human pathogen
Human pathogen, Animal pathogen
 
 
 
 
       Treponema (21)
         tpa  Treponema pallidum subsp. pallidum Nichols
         tpw  Treponema pallidum subsp. pallidum Nichols
         tpp  Treponema pallidum subsp. pallidum SS14
         tpu  Treponema pallidum subsp. pallidum DAL-1
         tph  Treponema pallidum subsp. pallidum Chicago
         tpo  Treponema pallidum subsp. pallidum Mexico A
         tpas  Treponema pallidum subsp. pallidum Sea 81-4
         tpc  Treponema pallidum subsp. pertenue CDC2
         tpg  Treponema pallidum subsp. pertenue Gauthier
         tpm  Treponema pallidum subsp. pertenue SamoaD
         tpb  Treponema pallidum Fribourg-Blanc
         tde  Treponema denticola
         tsu  Treponema succinifaciens
         tbe  Treponema brennaborense
         taz  Treponema azotonutricium
         tpi  Treponema primitia
         tpl  Treponema paraluiscuniculi
         tped  Treponema pedis
         scd  Treponema caldarium
         tpk  Treponema putidum
         trm  Treponema sp. OMZ 838
Human pathogen
 
Human pathogen, Animal pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen
Human pathogen, Animal pathogen
Human pathogen
 
 
 
 
Animal pathogen
 
 
 
Human pathogen
       Sediminispirochaeta (1)
       Spirochaeta (3)
       Sphaerochaeta (3)
       Salinispira (1)
       Leptospira (10)
         lil  Leptospira interrogans serovar Lai 56601
         lie  Leptospira interrogans serovar Lai IPAV
         lic  Leptospira interrogans serovar Copenhageni
         lis  Leptospira interrogans serovar Linhai
         lbj  Leptospira borgpetersenii JB197
         lbl  Leptospira borgpetersenii L550
         lbi  Leptospira biflexa serovar Patoc Patoc 1 (Paris)
         lbf  Leptospira biflexa serovar Patoc Patoc 1 (Ames)
         lst  Leptospira santarosai
         laj  Leptospira alstonii
Human pathogen, Animal pathogen
 
Human pathogen, Animal pathogen
Human pathogen
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
 
 
Human pathogen, Animal pathogen
Human pathogen, Animal pathogen
       Turneriella (1)
       Brachyspira (8)
         bhy  Brachyspira hyodysenteriae WA1
         bhd  Brachyspira hyodysenteriae ATCC 27164
         brm  Brachyspira murdochii
         bpo  Brachyspira pilosicoli 95/1000
         bpj  Brachyspira pilosicoli B2904
         bpip  Brachyspira pilosicoli P43/6/78
         bpw  Brachyspira pilosicoli WesB
         bip  Brachyspira intermedia
Animal pathogen
Animal pathogen
 
Animal pathogen
Animal pathogen
Animal pathogen, Human pathogen
Animal pathogen
Animal pathogen
     Acidobacteria (9)
     Elusimicrobia (4)
     Fusobacteria (19)
       Fusobacterium (11)
         fnu  Fusobacterium nucleatum subsp. nucleatum ATCC 25586
         fnc  Fusobacterium nucleatum subsp. vincentii 3_1_36A2
         fnt  Fusobacterium nucleatum subsp. vincentii 3_1_27
         fus  Fusobacterium nucleatum subsp. animalis 4_8
         fne  Fusobacterium nucleatum subsp. animalis 7_1
         fhw  Fusobacterium hwasookii
         fpd  Fusobacterium periodonticum
         fva  Fusobacterium varium
         ful  Fusobacterium ulcerans
         fmo  Fusobacterium mortiferum
         fgo  Fusobacterium gonidiaformans
Human pathogen
 
 
 
 
 
 
Human pathogen
 
 
 
       Ilyobacter (1)
       Leptotrichia (4)
       Sebaldella (1)
       Streptobacillus (1)
         smf  Streptobacillus moniliformis
Human pathogen
       Sneathia (1)
         sns  Sneathia amnii
Human pathogen
     Synergistetes (6)
     Fibrobacteres (2)
     Gemmatimonadetes (3)
     Bacteroidetes (264)
       Bacteroides (19)
         bth  Bacteroides thetaiotaomicron VPI-5482
         btho  Bacteroides thetaiotaomicron 7330
         bfr  Bacteroides fragilis YCH46
         bfs  Bacteroides fragilis NCTC9343
         bfg  Bacteroides fragilis 638R
         bfb  Bacteroides fragilis BOB25
         bvu  Bacteroides vulgatus
         bhl  Bacteroides helcogenes
         bsa  Bacteroides salanitronis
         bxy  Bacteroides xylanisolvens
         bdo  Bacteroides dorei HS1_L_1_B_010
         bdh  Bacteroides dorei HS1_L_3_B_079
         boa  Bacteroides ovatus
         bcel  Bacteroides cellulosilyticus
         bcac  Bacteroides caccae
         bcae  Bacteroides caecimuris
         bzg  Bacteroides zoogleoformans
         bhf  Bacteroides heparinolyticus
         bacc  Bacteroidales bacterium CF
 
 
Human pathogen
Human pathogen
 
 
 
Animal pathogen
 
 
 
 
 
 
 
 
 
 
 
       Porphyromonas (5)
         pgi  Porphyromonas gingivalis W83
         pgn  Porphyromonas gingivalis ATCC 33277
         pgt  Porphyromonas gingivalis TDC60
         pah  Porphyromonas asaccharolytica
         pcre  Porphyromonas crevioricanis
Human pathogen
Human pathogen
Human pathogen
 
 
       Fermentimonas (1)
       Petrimonas (2)
       Paludibacter (1)
       Parabacteroides (2)
         pdi  Parabacteroides distasonis
         parc  Parabacteroides sp. CT06
Human pathogen
 
       Tannerella (2)
       Muribaculum (1)
       Barnesiella (1)
       Proteiniphilum (1)
       Odoribacter (1)
       Azobacteroides (1)
       Prevotella (9)
       Alistipes (2)
       Mucinivorans (1)
       Draconibacterium (1)
       Salinivirga (1)
       Alkalitalea (1)
       Unclassified Marinifilaceae (1)
       Salinibacter (2)
       Rhodothermus (2)
       Unclassified Rhodothermaceae (1)
       Chitinophaga (2)
       Niastella (1)
       Niabella (2)
       Flavisolibacter (1)
       Arachidicoccus (1)
       Filimonas (1)
       Haliscomenobacter (1)
       Saprospira (1)
       Pedobacter (5)
       Pseudopedobacter (1)
       Sphingobacterium (4)
       Solitalea (1)
       Mucilaginibacter (3)
       Unclassified Sphingobacteriaceae (1)
       Cyclobacterium (2)
       Belliella (1)
       Echinicola (2)
       Algoriphagus (1)
       Cytophaga (1)
       Dyadobacter (1)
       Spirosoma (4)
       Leadbetterella (1)
       Runella (2)
       Emticicia (1)
       Fibrella (2)
       Pseudarcicella (1)
       Arcticibacterium (1)
       Flexibacter (1)
       Hymenobacter (8)
       Pontibacter (1)
       Rufibacter (3)
       Marivirga (1)
       Flammeovirga (1)
       Unclassified Flammeovirgaceae (1)
       Amoebophilus (1)
       Cardinium (2)
       Gramella (4)
       Flavobacterium (17)
       Capnocytophaga (11)
         coc  Capnocytophaga ochracea
         ccm  Capnocytophaga canimorsus
         col  Capnocytophaga sp. oral taxon 323
         chg  Capnocytophaga haemolytica
         capn  Capnocytophaga sp. ChDC OS43
         cgh  Capnocytophaga gingivalis
         clk  Capnocytophaga leadbetteri
         cspu  Capnocytophaga sputigena
         ccyn  Capnocytophaga cynodegmi
         caph  Capnocytophaga sp. H4358
         csto  Capnocytophaga stomatis
Human pathogen
Human pathogen
 
 
 
 
 
 
 
 
 
       Robiginitalea (1)
       Zunongwangia (1)
       Croceibacter (1)
       Riemerella (6)
       Maribacter (4)
       Cellulophaga (5)
       Weeksella (1)
       Dokdonia (4)
       Lacinutrix (3)
       Zobellia (1)
       Muricauda (2)
       Aequorivita (1)
       Ornithobacterium (2)
       Psychroflexus (1)
       Nonlabens (4)
       Polaribacter (5)
       Elizabethkingia (7)
         eao  Elizabethkingia anophelis NUHP1
         emn  Elizabethkingia anophelis FMS-007
         een  Elizabethkingia anophelis JM-87
         elb  Elizabethkingia miricola
         emg  Elizabethkingia meningoseptica
         ego  Elizabethkingia ursingii
         egm  Elizabethkingia bruuniana
 
Human pathogen
 
 
 
 
 
       Myroides (4)
         myr  Myroides sp. A21
         mpw  Myroides profundi
         mod  Myroides odoratimimus
         myz  Myroides sp. ZB35
Human pathogen
 
 
 
       Chryseobacterium (8)
       Winogradskyella (2)
       Siansivirga (1)
       Algibacter (1)
       Sediminicola (1)
       Tenacibaculum (4)
       Lutibacter (2)
       Wenyingzhuangia (1)
       Formosa (2)
       Salegentibacter (1)
       Seonamhaeicola (1)
       Arenibacter (1)
       Olleya (1)
       Flavivirga (1)
       Tamlana (1)
       Aureitalea (1)
       Spongiibacterium (1)
       Kordia (1)
       Unclassified Flavobacteriaceae (2)
       Sulcia (9)
       Blattabacterium (8)
       Fluviicola (2)
       Owenweeksia (1)
       Ichthyobacterium (1)
       Walczuchella (1)
       Uzinura (1)
       Unclassified Bacteroidetes (1)
     Chlorobi (17)
     Cloacimonetes (1)
     Aquificae (14)
     Thermotogae (31)
     Caldiserica (1)
     Chrysiogenetes (1)
     Deferribacteres (4)
     Calditrichaeota (1)
     Dictyoglomi (2)
     Nitrospirae (9)
     Thermodesulfobacteria (4)
     Saccharibacteria (4)
     Peregrinibacteria (1)
     Bipolaricaulota (1)
     Other (1)
     Unclassified Bacteria (11)
 
   Archaea (274)

[ BRITE | KEGG2 | KEGG ]
Last updated: August 8, 2018

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