KEGG Organisms

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 Eukaryotes (541)
 
   Animals (250)
     Vertebrates (146)
       Mammals (66)
       Birds (24)
       Reptiles (12)
       Amphibians (3)
       Fishes (39)
       Cartilaginous fishes (2)
 
 
 
 
 
 
     Lancelets (1)
     Ascidians (1)
     Echinoderms (2)
     Hemichordates (1)
     Arthropods (72)
       Insects (65)
       Crustaceans (2)
       Chelicerates (5)
 
 
 
     Nematodes (6)
     Annelids (1)
     Mollusks (5)
     Brachiopodas (1)
     Flatworms (4)
     Cnidarians (8)
     Placozoans (1)
     Poriferans (1)
 
   Plants (106)
     Eudicots (75)
       Mustard family (9)
         ath  Arabidopsis thaliana (thale cress)
         aly  Arabidopsis lyrata (lyrate rockcress)
         crb  Capsella rubella
         csat  Camelina sativa (false flax)
         eus  Eutrema salsugineum
         brp  Brassica rapa (field mustard)
         bna  Brassica napus (rape)
         boe  Brassica oleracea (wild cabbage)
         rsz  Raphanus sativus (radish)
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       Caper family (1)
         thj  Tarenaya hassleriana (spider flower)
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       Papaya family (1)
         cpap  Carica papaya (papaya)
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       Rue family (2)
         cit  Citrus sinensis (Valencia orange)
         cic  Citrus clementina (mandarin orange)
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       Mallow family (5)
         tcc  Theobroma cacao (cacao)
         gra  Gossypium raimondii
         ghi  Gossypium hirsutum (upland cotton)
         gab  Gossypium arboreum
         dzi  Durio zibethinus (durian)
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       Myrtle family (1)
         egr  Eucalyptus grandis (rose gum)
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       Pea family (13)
         gmx  Glycine max (soybean)
         gsj  Glycine soja (wild soybean)
         pvu  Phaseolus vulgaris (common bean)
         vra  Vigna radiata (mung bean)
         var  Vigna angularis (adzuki bean)
         vun  Vigna unguiculata (cowpea)
         ccaj  Cajanus cajan (pigeon pea)
         mtr  Medicago truncatula (barrel medic)
         cam  Cicer arietinum (chickpea)
         lja  Lotus japonicus
         adu  Arachis duranensis
         aip  Arachis ipaensis
         lang  Lupinus angustifolius (narrow-leaved blue lupine)
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       Rose family (7)
         fve  Fragaria vesca (woodland strawberry)
         rcn  Rosa chinensis (China rose)
         pper  Prunus persica (peach)
         pmum  Prunus mume (Japanese apricot)
         pavi  Prunus avium (sweet cherry)
         mdm  Malus domestica (apple)
         pxb  Pyrus x bretschneideri (Chinese white pear)
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       Buckthorn family (1)
         zju  Ziziphus jujuba (Chinese jujube)
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       Cucumber family (6)
         csv  Cucumis sativus (cucumber)
         cmo  Cucumis melo (muskmelon)
         mcha  Momordica charantia (bitter melon)
         cmax  Cucurbita maxima (winter squash)
         cmos  Cucurbita moschata (crookneck pumpkin)
         cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
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       Spurge family (4)
         rcu  Ricinus communis (castor bean)
         jcu  Jatropha curcas
         hbr  Hevea brasiliensis (rubber tree)
         mesc  Manihot esculenta (cassava)
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       Willow family (2)
         pop  Populus trichocarpa (black cottonwood)
         peu  Populus euphratica (Euphrates poplar)
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       Walnut family (1)
         jre  Juglans regia (English walnut)
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       Beech family (1)
         qsu  Quercus suber (cork oak)
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       Grape family (1)
         vvi  Vitis vinifera (wine grape)
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       Nightshade family (8)
         sly  Solanum lycopersicum (tomato)
         spen  Solanum pennellii
         sot  Solanum tuberosum (potato)
         cann  Capsicum annuum
         nta  Nicotiana tabacum (common tobacco)
         nsy  Nicotiana sylvestris
         nto  Nicotiana tomentosiformis
         nau  Nicotiana attenuata
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       Morning-glory family (1)
         ini  Ipomoea nil (Japanese morning glory)
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       Sesame family (1)
         sind  Sesamum indicum (sesame)
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       Olive family (1)
         oeu  Olea europaea var. sylvestris (wild olive)
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       Daisy family (3)
         han  Helianthus annuus (common sunflower)
         lsv  Lactuca sativa (garden lettuce)
         ccav  Cynara cardunculus var. scolymus (artichoke)
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       Parsley family (1)
         dcr  Daucus carota (carrot)
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       Amaranth family (3)
         bvg  Beta vulgaris (sugar beet)
         soe  Spinacia oleracea (spinach)
         cqi  Chenopodium quinoa (quinoa)
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       Lotus family (1)
         nnu  Nelumbo nucifera (sacred lotus)
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       Poppy family (1)
         psom  Papaver somniferum (opium poppy)
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     Monocots (14)
       Grass family (8)
         osa  Oryza sativa japonica (Japanese rice) (RefSeq)
         dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
         obr  Oryza brachyantha (malo sina)
         bdi  Brachypodium distachyon
         ats  Aegilops tauschii (wheat D)
         sbi  Sorghum bicolor (sorghum)
         zma  Zea mays (maize)
         sita  Setaria italica (foxtail millet)
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       Palm family (2)
         pda  Phoenix dactylifera (date palm)
         egu  Elaeis guineensis (African oil palm)
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       Banana family (1)
         mus  Musa acuminata (wild Malaysian banana)
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       Orchid family (2)
         dct  Dendrobium catenatum
         peq  Phalaenopsis equestris
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       Asparagus family (1)
         aof  Asparagus officinalis (garden asparagus)
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     Basal Magnoliophyta (1)
       Amborella family (1)
         atr  Amborella trichopoda
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     Ferns (1)
       smo  Selaginella moellendorffii
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     Mosses (1)
       ppp  Physcomitrium patens
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     Green algae (11)
       cre  Chlamydomonas reinhardtii
       vcn  Volvox carteri f. nagariensis
       mng  Monoraphidium neglectum
       csl  Coccomyxa subellipsoidea
       cvr  Chlorella variabilis
       apro  Auxenochlorella protothecoides
       olu  Ostreococcus lucimarinus
       ota  Ostreococcus tauri
       bpg  Bathycoccus prasinos
       mis  Micromonas commoda
       mpp  Micromonas pusilla
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     Red algae (3)
       cme  Cyanidioschyzon merolae
       gsl  Galdieria sulphuraria
       ccp  Chondrus crispus (carragheen)
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   Fungi (133)
     Ascomycetes (95)
       Saccharomycetes (32)
       Sordariomycetes (27)
       Leotiomycetes (5)
       Eurotiomycetes (19)
       Dothideomycetes (10)
       Pezizomycetes (1)
       Schizosaccharomycetes (1)
 
 
 
 
 
 
 
     Basidiomycetes (33)
     Microsporidians (5)
 
   Protists (52)
     Choanoflagellates (2)
     Amoebozoa (7)
       Dictyostelia (3)
       Entamoeba (3)
       Acanthamoeba (1)
 
 
 
     Alveolates (21)
       Apicomplexans (18)
       Ciliates (2)
       Dinoflagellates (1)
 
 
 
     Stramenopiles (8)
       Diatoms (3)
         pti  Phaeodactylum tricornutum
         fcy  Fragilariopsis cylindrus
         tps  Thalassiosira pseudonana
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       Eustigmatophytes (1)
       Pelagophytes (1)
       Oomycetes (3)
     Haptophyta (1)
     Cryptomonads (1)
     Euglenozoa (9)
       Kinetoplasts (9)
 
     Heterolobosea (1)
       Tetramitia (1)
 
     Metamonada (2)
       Trichomonads (1)
       Diplomonads (1)
 
 
 
 Prokaryotes (6085)
 
   Bacteria (5762)
     Gammaproteobacteria - Enterobacteria (510)
       Escherichia (69)
       Salmonella (54)
       Shigella (13)
       Enterobacter (31)
       Cronobacter (11)
       Klebsiella (42)
       Citrobacter (15)
       Gibbsiella (1)
       Blochmannia (6)
       Hamiltonella (1)
       Unclassified aphid symbionts (2)
       Unclassified mealybug symbionts (1)
       Riesia (2)
       Moranella (2)
       Shimwellia (1)
       Raoultella (6)
       Cedecea (4)
       Pluralibacter (3)
       Kosakonia (5)
       Kluyvera (2)
       Ishikawaella (1)
       Leclercia (6)
       Lelliottia (4)
       Limnobaculum (1)
       Buttiauxella (1)
       Tachikawaea (1)
       Doolittlea (1)
       Hoaglandella (1)
       Gullanella (1)
       Mikella (1)
       Purcelliella (1)
       Metakosakonia (1)
       Atlantibacter (1)
       Izhakiella (1)
       Yokenella (1)
       Scandinavium (1)
       Unclassified Enterobacteria (4)
       Yersinia (46)
       Serratia (24)
       Chania (1)
       Rahnella (4)
       Fukatsuia (1)
       Pectobacterium (13)
       Sodalis (4)
       Dickeya (11)
       Brenneria (3)
       Lonsdalea (1)
       Erwinia (11)
       Buchnera (18)
       Wigglesworthia (2)
       Pantoea (17)
       Mixta (4)
       Tatumella (2)
       Photorhabdus (4)
       Proteus (8)
       Xenorhabdus (7)
       Providencia (9)
       Morganella (1)
       Arsenophonus (3)
       Edwardsiella (8)
       Hafnia (2)
       Obesumbacterium (1)
       Pragia (2)
       Leminorella (1)
       Phytobacter (2)
       Plesiomonas (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Gammaproteobacteria - Others (837)
       Haemophilus (22)
       Glaesserella (5)
       Histophilus (2)
       Pasteurella (7)
       Basfia (2)
       Mannheimia (15)
       Actinobacillus (10)
       Aggregatibacter (9)
       Gallibacterium (1)
       Bibersteinia (4)
       Avibacterium (2)
       Rodentibacter (2)
       Otariodibacter (1)
       Frederiksenia (1)
       Xylella (9)
       Xanthomonas (38)
       Stenotrophomonas (11)
       Pseudoxanthomonas (3)
       Lysobacter (11)
       Luteimonas (3)
       Thermomonas (2)
       Pseudolysobacter (1)
       Frateuria (1)
       Rhodanobacter (2)
       Dyella (4)
       Dokdonella (1)
       Luteibacter (2)
       Ahniella (1)
       Aerosticca (1)
       Vibrio (53)
       Aliivibrio (4)
       Photobacterium (3)
       Grimontia (1)
       Paraphotobacterium (1)
       Salinivibrio (3)
       Pseudomonas (114)
       Azotobacter (4)
       Oblitimonas (1)
       Permianibacter (1)
       Psychrobacter (12)
       Acinetobacter (47)
       Moraxella (8)
       Unclassified Moraxellaceae (1)
       Shewanella (34)
       Idiomarina (5)
       Colwellia (7)
       Litorilituus (1)
       Thalassotalea (2)
       Pseudoalteromonas (23)
       Marinobacter (12)
       Alteromonas (23)
       Glaciecola (2)
       Paraglaciecola (2)
       Lacimicrobium (1)
       Catenovulum (1)
       Saliniradius (1)
       Salinimonas (2)
       Hydrocarboniclastica (1)
       Psychromonas (2)
       Ferrimonas (2)
       Moritella (3)
       Cellvibrio (5)
       Saccharophagus (1)
       Teredinibacter (1)
       Simiduia (1)
       Spongiibacter (1)
       Zhongshania (1)
       Oceanicoccus (1)
       Microbulbifer (6)
       Halioglobus (2)
       Kineobactrum (1)
       Coxiella (8)
       Rickettsiella (1)
       Aquicella (2)
       Legionella (23)
       Tatlockia (1)
       Methylococcus (2)
       Methylomonas (5)
       Methylomicrobium (2)
       Methylovulum (1)
       Methylocaldum (1)
       Methylospira (1)
       Francisella (43)
       Allofrancisella (2)
       Hydrogenovibrio (2)
       Thiomicrospira (3)
       Methylophaga (2)
       Cycloclasticus (3)
       Piscirickettsia (1)
       Thiomicrorhabdus (1)
       Thioploca (1)
       Beggiatoa (1)
       Nitrosococcus (4)
       Allochromatium (1)
       Thiocystis (1)
       Thioflavicoccus (1)
       Marichromatium (1)
       Tenderia (1)
       Nitrosoglobus (1)
       Thiodictyon (1)
       Rheinheimera (1)
       Thermochromatium (1)
       Alkalilimnicola (1)
       Halorhodospira (2)
       Ectothiorhodospira (2)
       Thioalkalivibrio (5)
       Spiribacter (4)
       Acidihalobacter (1)
       Halothiobacillus (2)
       Wenzhouxiangella (1)
       Woeseia (1)
       Granulosicoccus (1)
       Guyparkeria (1)
       Thiohalobacter (1)
       Hahella (2)
       Chromohalobacter (1)
       Halomonas (18)
       Portiera (9)
       Carsonella (7)
       Evansia (1)
       Zymobacter (1)
       Halotalea (1)
       Cobetia (1)
       Kushneria (3)
       Pistricoccus (1)
       Alcanivorax (5)
       Ketobacter (1)
       Kangiella (4)
       Marinomonas (3)
       Thalassolituus (2)
       Oleispira (1)
       Marinobacterium (1)
       Bacterioplanes (1)
       Neptunomonas (1)
       Nitrincola (1)
       Bermanella (1)
       Gynuella (1)
       Reinekea (1)
       Oleiphilus (1)
       Litoricola (1)
       Aeromonas (22)
       Tolumonas (1)
       Oceanimonas (1)
       Oceanisphaera (2)
       Zobellella (1)
       Dichelobacter (1)
       Cardiobacterium (1)
       Gilliamella (1)
       Frischella (1)
       Orbus (1)
       Steroidobacter (1)
       Solimonas (1)
       Sinimarinibacterium (1)
       Immundisolibacter (1)
       Sulfuricaulis (1)
       Sulfurifustis (1)
       Acidiferrobacter (1)
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       Sedimenticola (1)
       Thioglobus (3)
       Pseudohongiella (1)
       Nardonella (1)
       Reidiella (1)
       Ruthia (1)
       Vesicomyosocius (1)
       Unclassified Gammaproteobacteria (6)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Betaproteobacteria (445)
       Neisseria (29)
       Snodgrassella (1)
       Kingella (1)
       Vitreoscilla (2)
       Eikenella (2)
       Simonsiella (1)
       Unclassified Neisseriaceae (1)
       Chromobacterium (7)
       Iodobacter (1)
       Laribacter (1)
       Pseudogulbenkiania (1)
       Jeongeupia (1)
       Aquaspirillum (1)
       Aquitalea (2)
       Deefgea (1)
       Ralstonia (13)
       Cupriavidus (13)
       Burkholderia (89)
       Paraburkholderia (18)
       Mycetohabitans (1)
       Polynucleobacter (4)
       Pandoraea (14)
       Paucimonas (1)
       Ephemeroptericola (1)
       Lautropia (1)
       Mycoavidus (1)
       Caballeronia (1)
       Limnobacter (1)
       Bordetella (24)
       Achromobacter (9)
       Taylorella (5)
       Pusillimonas (3)
       Advenella (2)
       Castellaniella (1)
       Basilea (1)
       Alcaligenes (3)
       Paenalcaligenes (1)
       Orrella (1)
       Oligella (1)
       Pigmentiphaga (2)
       Kerstersia (1)
       Rhodoferax (6)
       Polaromonas (5)
       Acidovorax (11)
       Verminephrobacter (1)
       Delftia (4)
       Variovorax (6)
       Comamonas (5)
       Alicycliphilus (2)
       Ramlibacter (1)
       Symbiobacter (1)
       Ottowia (2)
       Limnohabitans (2)
       Hydrogenophaga (6)
       Diaphorobacter (2)
       Simplicispira (1)
       Melaminivora (2)
       Serpentinomonas (2)
       Methylibium (2)
       Herminiimonas (1)
       Janthinobacterium (8)
       Herbaspirillum (6)
       Zinderia (1)
       Collimonas (3)
       Massilia (10)
       Oxalobacter (1)
       Undibacterium (2)
       Noviherbaspirillum (1)
       Duganella (1)
       Sutterella (2)
       Leptothrix (1)
       Thiomonas (2)
       Rubrivivax (2)
       Roseateles (1)
       Paucibacter (1)
       Mitsuaria (1)
       Rhizobacter (1)
       Aquabacterium (1)
       Sphaerotilus (1)
       Xylophilus (1)
       Unclassified Burkholderiales (3)
       Nitrosomonas (7)
       Nitrosospira (2)
       Sulfuritalea (1)
       Methyloversatilis (1)
       Thiobacillus (1)
       Methylobacillus (1)
       Methylotenera (2)
       Methylovorus (2)
       Methylopumilus (2)
       Methylophilus (1)
       Sideroxydans (1)
       Gallionella (1)
       Sulfuricella (1)
       Sulfuriferula (3)
       Ferriphaselus (1)
       Nitrotoga (1)
       Aromatoleum (1)
       Azospira (1)
       Rugosibacter (1)
       Oryzomicrobium (1)
       Unclassified Rhodocyclaceae (1)
       Dechloromonas (2)
       Azoarcus (9)
       Thauera (5)
       Unclassified Zoogloeaceae (1)
       Ferrovum (1)
       Accumulibacter (1)
       Tremblaya (3)
       Kinetoplastibacterium (8)
       Profftella (1)
       Nasuia (1)
       Vidania (1)
       Unclassified Betaproteobacteria (3)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Epsilonproteobacteria (186)
       Helicobacter (76)
       Wolinella (1)
       Sulfurimonas (5)
       Sulfuricurvum (2)
       Campylobacter (67)
       Arcobacter (13)
       Aliiarcobacter (1)
       Halarcobacter (2)
       Pseudoarcobacter (1)
       Unclassified Arcobacter (2)
       Sulfurospirillum (7)
       Hydrogenimonas (1)
       Nitratifractor (1)
       Nitratiruptor (1)
       Sulfurovum (2)
       Nautilia (2)
       Caminibacter (1)
       Cetia (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Deltaproteobacteria (90)
       Geobacter (11)
       Geoalkalibacter (1)
       Pelobacter (4)
       Desulfuromonas (2)
       Desulfovibrio (18)
       Pseudodesulfovibrio (5)
       Lawsonia (2)
       Desulfomicrobium (2)
       Desulfohalobium (1)
       Desulfotalea (1)
       Desulfurivibrio (1)
       Desulfobulbus (2)
       Desulfocapsa (1)
       Desulfococcus (2)
       Desulfatibacillum (1)
       Desulfobacterium (1)
       Desulfobacula (1)
       Desulfosarcina (3)
       Anaeromyxobacter (4)
       Myxococcus (3)
       Corallococcus (3)
       Stigmatella (1)
       Archangium (1)
       Melittangium (1)
       Cystobacter (1)
       Vulgatibacter (1)
       Sorangium (2)
       Chondromyces (1)
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       Labilithrix (1)
       Minicystis (1)
       Haliangium (1)
       Syntrophus (1)
       Desulfobacca (1)
       Desulfomonile (1)
       Syntrophobacter (1)
       Desulfoglaeba (1)
       Desulfarculus (1)
       Hippea (1)
       Desulfurella (1)
       Bradymonas (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Alphaproteobacteria (701)
       Rickettsia (48)
       Orientia (2)
       Phycorickettsia (1)
       Wolbachia (10)
       Anaplasma (10)
       Ehrlichia (14)
       Neorickettsia (4)
       Midichloria (1)
       Fokinia (1)
       Unclassified Rickettsiales (2)
       Paracaedibacter (1)
       Paracaedimonas (1)
       Nucleicultrix (1)
       Unclassified Holosporaceae (1)
       Mesorhizobium (11)
       Chelativorans (1)
       Hoeflea (1)
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     Oligoflexia (12)
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       Unclassified Silvanigrellales (1)
 
 
 
 
     Other proteobacteria (10)
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     Firmicutes - Bacilli (815)
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       Jeotgalibaca (5)
       Dolosigranulum (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Firmicutes - Clostridia (231)
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       Unclassified Lachnospiraceae (4)
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       Peptacetobacter (1)
       Unclassified Peptostreptococcaceae (1)
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       Unclassified Clostridiales (4)
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       Thermoanaerobacter (8)
       Carboxydothermus (1)
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       Halanaerobium (2)
       Halocella (1)
       Acetohalobium (1)
       Halobacteroides (1)
       Anoxybacter (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Firmicutes - Others (46)
       Finegoldia (1)
       Anaerococcus (1)
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       Erysipelothrix (5)
       Faecalitalea (1)
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       Faecalibaculum (1)
       Absiella (2)
       Erysipelatoclostridium (1)
       Unclassified Erysipelotrichaceae (2)
       Limnochorda (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Tenericutes (157)
       Mycoplasma (97)
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       Acholeplasma (6)
       Mesoplasma (8)
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       Spiroplasma (26)
       Izimaplasma (1)
       Unclassified Tenericutes (2)
 
 
 
 
 
 
 
 
 
 
     Actinobacteria (749)
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       Hoyosella (1)
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       Corynebacterium (100)
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       Tsukamurella (2)
       Segniliparus (1)
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       Tomitella (1)
       Streptomyces (70)
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       Coriobacterium (1)
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       Unclassified Coriobacteriaceae (1)
       Egibacter (1)
       Euzebya (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Cyanobacteria (128)
       Synechocystis (8)
         syn  Synechocystis sp. PCC 6803
         syz  Synechocystis sp. PCC 6803
         syy  Synechocystis sp. PCC 6803 GT-S
         syt  Synechocystis sp. PCC 6803 GT-I
         sys  Synechocystis sp. PCC 6803 PCC-N
         syq  Synechocystis sp. PCC 6803 PCC-P
         syj  Synechocystis sp. PCC 6714
         syo  Synechocystis sp. IPPAS B-1465
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       Synechococcus (23)
         syc  Synechococcus elongatus PCC6301
         syf  Synechococcus elongatus PCC7942
         syw  Synechococcus sp. WH8102
         syd  Synechococcus sp. CC9605
         sye  Synechococcus sp. CC9902
         syg  Synechococcus sp. CC9311
         syr  Synechococcus sp. RCC307
         syx  Synechococcus sp. WH7803
         syp  Synechococcus sp. PCC7002
         cya  Synechococcus sp. JA-3-3Ab
         cyb  Synechococcus sp. JA-2-3B'a(2-13)
         syne  Synechococcus sp. PCC 6312
         synp  Synechococcus sp. PCC 7502
         synk  Synechococcus sp. KORDI-100
         synr  Synechococcus sp. KORDI-49
         synd  Synechococcus sp. KORDI-52
         syu  Synechococcus sp. UTEX 2973
         syh  Synechococcus sp. WH 8109
         synw  Synechococcus sp. WH 8103
         slw  Synechococcus lividus
         syv  Synechococcus sp. PCC 73109
         syl  Synechococcus sp. PCC 7003
         sync  Synechococcus sp. CB0101
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       Thermosynechococcus (4)
         tel  Thermosynechococcus elongatus
         thn  Thermosynechococcus sp. NK55
         tvn  Thermosynechococcus vulcanus
         thec  Thermosynechococcus sp. CL-1
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       Cyanobium (2)
         cgc  Cyanobium gracile
         cyi  Cyanobium sp. NIES-981
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       Dactylococcopsis (1)
         dsl  Dactylococcopsis salina
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       Chamaesiphon (1)
         cmp  Chamaesiphon minutus
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       Leptolyngbya (4)
         lep  Leptolyngbya sp. PCC 7376
         len  Leptolyngbya sp. NIES-3755
         let  Leptolyngbya sp. O-77
         lbo  Leptolyngbya boryana
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       Halomicronema (1)
         hhg  Halomicronema hongdechloris
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       Pseudanabaena (2)
         pseu  Pseudanabaena sp. PCC 7367
         pser  Pseudanabaena sp. ABRG5-3
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       Prochlorococcus (14)
         pma  Prochlorococcus marinus subsp. marinus CCMP1375
         pmm  Prochlorococcus marinus subsp. pastoris CCMP1986
         pmt  Prochlorococcus marinus MIT 9313
         pmn  Prochlorococcus marinus NATL2A
         pmi  Prochlorococcus marinus MIT 9312
         pmb  Prochlorococcus marinus AS9601
         pmc  Prochlorococcus marinus MIT 9515
         pmf  Prochlorococcus marinus MIT 9303
         pmg  Prochlorococcus marinus MIT 9301
         pmh  Prochlorococcus marinus MIT 9215
         pmj  Prochlorococcus marinus MIT 9211
         pme  Prochlorococcus marinus NATL1A
         prc  Prochlorococcus sp. MIT 0604
         prm  Prochlorococcus sp. MIT 0801
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       Acaryochloris (1)
         amr  Acaryochloris marina
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       Thermoleptolyngbya (1)
         theu  Thermoleptolyngbya sp. PKUAC-SCTA183
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       Gloeocapsa (1)
         glp  Gloeocapsa sp. PCC 7428
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       Geminocystis (2)
         gen  Geminocystis sp. NIES-3709
         gee  Geminocystis sp. NIES-3708
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       Chondrocystis (1)
         chon  Chondrocystis sp. NIES-4102
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       Microcystis (4)
         mar  Microcystis aeruginosa
         mpk  Microcystis panniformis
         miq  Microcystis sp. MC19
         mvz  Microcystis viridis
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       Cyanobacterium (3)
         can  Cyanobacterium aponinum
         csn  Cyanobacterium stanieri
         cyl  Cyanobacterium sp. HL-69
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       Halothece (1)
         hao  Halothece sp. PCC 7418
  58/66
       Euhalothece (1)
         enn  Euhalothece natronophila
  58/66
       Atelocyanobacterium (1)
         cyu  Candidatus Atelocyanobacterium thalassa
  32/66
       Crocosphaera (2)
         cyt  Crocosphaera subtropica
         cwa  Crocosphaera watsonii
  57/66
  50/66
       Rippkaea (2)
         cyp  Rippkaea orientalis PCC 8801
         cyh  Rippkaea orientalis PCC 8802
  56/66
  57/66
       Gloeothece (2)
         cyc  Gloeothece citriformis
         cyj  Gloeothece verrucosa
  58/66
  57/66
       Cyanothece (1)
         cyn  Cyanothece sp. PCC 7425
  53/66
       Trichodesmium (1)
         ter  Trichodesmium erythraeum
  50/66
       Microcoleus (1)
         mic  Microcoleus sp. PCC 7113
  56/66
       Arthrospira (1)
         arp  Arthrospira platensis
  56/66
       Planktothrix (1)
         pagh  Planktothrix agardhii
  50/66
       Oxynema (1)
         oxy  Oxynema sp. AP17
  56/66
       Limnospira (1)
         lfs  Limnospira fusiformis
  56/66
       Geitlerinema (1)
         gei  Geitlerinema sp. PCC 7407
  55/66
       Oscillatoria (2)
         oac  Oscillatoria acuminata
         oni  Oscillatoria nigro-viridis
  56/66
  55/66
       Moorea (1)
         mpro  Moorea producens
  49/66
       Crinalium (1)
         cep  Crinalium epipsammum
  55/66
       Gloeobacter (2)
         gvi  Gloeobacter violaceus
         glj  Gloeobacter kilaueensis
  49/66
  49/66
       Nostoc (8)
         ana  Nostoc sp. PCC 7120
         npu  Nostoc punctiforme
         nos  Nostoc sp. PCC 7107
         nop  Nostoc sp. PCC 7524
         non  Nostoc sp. NIES-3756
         nfl  Nostoc flagelliforme
         noe  Nostoc sp. CENA543
         nsh  Nostoc sphaeroides
  58/66
  54/66
  55/66
  57/66
  54/66
  55/66
  58/66
  51/66
       Trichormus (2)
         ava  Trichormus variabilis
         naz  'Nostoc azollae' 0708
  54/66
  56/66
       Anabaena (4)
         anb  Anabaena sp. 90
         acy  Anabaena cylindrica
         awa  Anabaena sp. WA102
         ann  Anabaena sp. YBS01
  56/66
  54/66
  47/66
  58/66
       Cylindrospermum (1)
         csg  Cylindrospermum stagnale
  56/66
       Calothrix (3)
         calo  Calothrix sp. PCC 7507
         calt  Calothrix sp. PCC 6303
         calh  Calothrix sp. 336/3
  58/66
  56/66
  48/66
       Rivularia (1)
         riv  Rivularia sp. PCC 7116
  57/66
       Fischerella (1)
         fis  Fischerella sp. NIES-3754
  54/66
       Nodularia (1)
         nsp  Nodularia spumigena
  27/66
       Dolichospermum (2)
         dou  Dolichospermum sp. UHCC 0315A
  51/66
       Tolypothrix (1)
         toq  Tolypothrix sp. PCC 7910
  58/66
       Unclassified Nostocales (1)
         ncn  Nostocales cyanobacterium HT-58-2
  58/66
       Chroococcidiopsis (1)
         cthe  Chroococcidiopsis thermalis
  58/66
       Pleurocapsa (1)
         plp  Pleurocapsa sp. PCC 7327
  57/66
       Stanieria (2)
         scs  Stanieria cyanosphaera
         stan  Stanieria sp. NIES-3757
  56/66
  54/66
       Unclassified Cyanobacteria (2)
         ceo  Cyanobacterium endosymbiont of Epithemia turgida
         cer  Cyanobacterium endosymbiont of Rhopalodia gibberula
  22/66
  22/66
       Unclassified Melainabacteria (1)
         mbf  Candidatus Melainabacteria bacterium MEL.A1
   9/66
     Chloroflexi (31)
       Dehalococcoides (12)
       Dehalogenimonas (3)
       Roseiflexus (2)
       Chloroflexus (3)
       Herpetosiphon (1)
       Thermomicrobium (1)
       Sphaerobacterineae (1)
       Anaerolinea (1)
       Brevefilum (1)
       Pelolinea (1)
       Unclassified Anaerolineaceae (1)
       Caldilinea (1)
       Promineofilum (1)
       Unclassified Ktedonobacterales (1)
       Tepidiforma (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Deinococcus-Thermus (33)
       Deinococcus (16)
       Truepera (1)
       Thermus (10)
       Meiothermus (4)
       Oceanithermus (1)
       Marinithermus (1)
 
 
 
 
 
 
     Other Terrabacteria group (3)
       Chthonomonas (1)
       Fimbriimonas (1)
       Thermobaculum (1)
 
 
 
     Chlamydiae (120)
       Chlamydia (114)
       Protochlamydia (2)
       Parachlamydia (1)
       Neochlamydia (1)
       Waddlia (1)
       Simkania (1)
 
 
 
 
 
 
     Verrucomicrobia (14)
       Opitutus (1)
       Lacunisphaera (1)
       Nibricoccus (1)
       Unclassified Opitutaceae (1)
       Coraliomargarita (1)
       Akkermansia (2)
       Roseimicrobium (1)
       Luteolibacter (1)
       Xiphinematobacter (1)
       Methylacidiphilum (2)
       Unclassified Verrucomicrobia (2)
 
 
 
 
 
 
 
 
 
 
 
     Planctomycetes (31)
       Rhodopirellula (1)
       Pirellula (2)
       Roseimaritima (1)
       Mariniblastus (1)
       Thermogutta (1)
       Lacipirellula (1)
       Planctopirus (2)
       Rubinisphaera (1)
       Planctomyces (2)
       Fuerstia (1)
       Gimesia (2)
       Bremerella (1)
       Gemmata (3)
       Tuwongella (1)
       Limnoglobus (1)
       Isosphaera (1)
       Singulisphaera (1)
       Paludisphaera (1)
       Aquisphaera (1)
       Kuenenia (1)
       Phycisphaera (1)
       Sedimentisphaera (2)
       Limihaloglobus (1)
       Anaerohalosphaera (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Kiritimatiellaeota (1)
       Kiritimatiella (1)
 
     Lentisphaerae (1)
       Unclassified Victivallales (1)
 
     Spirochaetes (86)
       Borreliella (19)
       Borrelia (11)
       Treponema (23)
       Sediminispirochaeta (1)
       Spirochaeta (4)
       Sphaerochaeta (3)
       Salinispira (1)
       Oceanispirochaeta (1)
       Leptospira (13)
       Turneriella (1)
       Brachyspira (9)
 
 
 
 
 
 
 
 
 
 
 
     Acidobacteria (13)
       Koribacter (1)
       Acidobacterium (1)
       Granulicella (3)
       Terriglobus (3)
       Acidisarcina (1)
       Edaphobacter (1)
       Solibacter (1)
       Chloracidobacterium (1)
       Luteitalea (1)
 
 
 
 
 
 
 
 
 
     Elusimicrobia (4)
       Elusimicrobium (1)
       Endomicrobium (2)
       Termite group 1 (1)
 
 
 
     Fusobacteria (24)
       Fusobacterium (13)
       Ilyobacter (1)
       Leptotrichia (7)
       Sebaldella (1)
       Streptobacillus (1)
       Sneathia (1)
 
 
 
 
 
 
     Synergistetes (6)
       Thermanaerovibrio (1)
       Aminobacterium (1)
       Thermovirga (1)
       Anaerobaculum (1)
       Fretibacterium (1)
       Cloacibacillus (1)
 
 
 
 
 
 
     Fibrobacteres (2)
       Fibrobacter (2)
 
     Gemmatimonadetes (3)
       Gemmatimonas (2)
       Gemmatirosa (1)
 
 
     Bacteroidetes (359)
       Bacteroides (20)
       Porphyromonas (6)
       Fermentimonas (1)
       Petrimonas (2)
       Paludibacter (1)
       Parabacteroides (2)
       Tannerella (2)
       Muribaculum (1)
       Duncaniella (1)
       Barnesiella (1)
       Proteiniphilum (1)
       Dysgonomonas (1)
       Odoribacter (1)
       Butyricimonas (1)
       Azobacteroides (1)
       Prevotella (10)
       Alloprevotella (1)
       Alistipes (6)
       Mucinivorans (1)
       Unclassified Bacteroidales (1)
       Draconibacterium (2)
       Salinivirga (1)
       Alkalitalea (1)
       Labilibaculum (1)
       Salinibacter (2)
       Rhodothermus (2)
       Unclassified Rhodothermaceae (1)
       Chitinophaga (4)
       Niastella (1)
       Niabella (2)
       Flavisolibacter (2)
       Arachidicoccus (4)
       Filimonas (1)
       Pseudoflavitalea (1)
       Panacibacter (1)
       Pseudobacter (1)
       Flavihumibacter (1)
       Haliscomenobacter (1)
       Saprospira (1)
       Pedobacter (7)
       Pseudopedobacter (1)
       Sphingobacterium (9)
       Solitalea (1)
       Mucilaginibacter (8)
       Anseongella (1)
       Olivibacter (1)
       Unclassified Sphingobacteriaceae (1)
       Cyclobacterium (2)
       Belliella (1)
       Echinicola (3)
       Algoriphagus (1)
       Cytophaga (1)
       Dyadobacter (1)
       Spirosoma (6)
       Leadbetterella (1)
       Runella (3)
       Emticicia (1)
       Fibrella (2)
       Allopseudarcicella (1)
       Arcticibacterium (1)
       Rhodocytophaga (1)
       Flexibacter (1)
       Hymenobacter (10)
       Pontibacter (2)
       Rufibacter (3)
       Nibribacter (1)
       Marivirga (1)
       Flammeovirga (2)
       Fabibacter (1)
       Unclassified Flammeovirgaceae (1)
       Amoebophilus (1)
       Cardinium (3)
       Chryseolinea (1)
       Gramella (4)
       Flavobacterium (25)
       Capnocytophaga (13)
       Robiginitalea (1)
       Zunongwangia (1)
       Croceibacter (1)
       Riemerella (6)
       Maribacter (5)
       Cellulophaga (5)
       Weeksella (1)
       Dokdonia (4)
       Lacinutrix (3)
       Zobellia (1)
       Muricauda (3)
       Aequorivita (2)
       Ornithobacterium (2)
       Psychroflexus (1)
       Nonlabens (5)
       Polaribacter (5)
       Elizabethkingia (9)
       Myroides (4)
       Chryseobacterium (15)
       Winogradskyella (2)
       Siansivirga (1)
       Algibacter (1)
       Sediminicola (1)
       Tenacibaculum (5)
       Lutibacter (1)
       Urechidicola (1)
       Wenyingzhuangia (1)
       Formosa (3)
       Salegentibacter (1)
       Seonamhaeicola (1)
       Arenibacter (1)
       Olleya (2)
       Flavivirga (1)
       Tamlana (1)
       Aureitalea (1)
       Spongiibacterium (1)
       Kordia (2)
       Mariniflexile (1)
       Aquimarina (3)
       Euzebyella (1)
       Cloacibacterium (1)
       Muriicola (1)
       Psychroserpens (1)
       Antarcticibacterium (2)
       Empedobacter (1)
       Oceanihabitans (1)
       Bergeyella (1)
       Marinirhabdus (1)
       Apibacter (1)
       Mesoflavibacter (1)
       Unclassified Flavobacteriaceae (3)
       Sulcia (9)
       Blattabacterium (9)
       Fluviicola (2)
       Owenweeksia (1)
       Ichthyobacterium (1)
       Walczuchella (1)
       Uzinura (1)
       Unclassified Bacteroidetes (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Chlorobi (17)
       Chlorobaculum (3)
       Chlorobium (5)
       Pelodictyon (2)
       Prosthecochloris (4)
       Chloroherpeton (1)
       Ignavibacterium (1)
       Melioribacter (1)
 
 
 
 
 
 
 
     Balneolaeota (1)
       Cyclonatronum (1)
 
     Cloacimonetes (1)
       Cloacimonas (1)
 
     Aquificae (14)
       Aquifex (1)
       Hydrogenobaculum (3)
       Hydrogenobacter (2)
       Thermocrinis (2)
       Sulfurihydrogenibium (2)
       Persephonella (1)
       Thermosulfidibacter (1)
       Thermovibrio (1)
       Desulfurobacterium (1)
 
 
 
 
 
 
 
 
 
     Thermotogae (32)
       Thermotoga (13)
       Pseudothermotoga (3)
       Thermosipho (4)
       Fervidobacterium (3)
       Petrotoga (1)
       Marinitoga (2)
       Defluviitoga (1)
       Kosmotoga (2)
       Mesotoga (2)
       Athalassotoga (1)
 
 
 
 
 
 
 
 
 
 
     Coprothermobacterota (1)
       Coprothermobacter (1)
 
     Caldiserica (1)
       Caldisericum (1)
 
     Chrysiogenetes (1)
       Desulfurispirillum (1)
 
     Deferribacteres (5)
       Deferribacter (1)
       Denitrovibrio (1)
       Calditerrivibrio (1)
       Flexistipes (1)
       Geovibrio (1)
 
 
 
 
 
     Calditrichaeota (1)
       Caldithrix (1)
 
     Dictyoglomi (2)
       Dictyoglomus (2)
 
     Nitrospirae (9)
       Thermodesulfovibrio (1)
       Nitrospira (4)
       Leptospirillum (4)
 
 
 
     Thermodesulfobacteria (7)
       Thermodesulfatator (1)
       Thermodesulfobacterium (3)
       Caldimicrobium (1)
       Thermosulfuriphilus (1)
       Thermosulfurimonas (1)
 
 
 
 
 
     Saccharibacteria (4)
       Saccharimonas (4)
 
     Peregrinibacteria (1)
       Peribacter (1)
 
     Bipolaricaulota (2)
       Bipolaricaulis (2)
 
     Other (4)
       Vampirococcus (1)
       Methylomirabilis (1)
       Chazhemtobacterium (1)
       Babela (1)
 
 
 
 
     Unclassified Bacteria (11)
 
   Archaea (323)
     Euryarchaeota (223)
       Methanocaldococcus (6)
       Methanotorris (1)
       Methanococcus (11)
       Methanothermococcus (1)
       Methanofervidicoccus (1)
       Methanothermobacter (8)
       Methanosphaera (2)
       Methanobrevibacter (6)
       Methanobacterium (10)
       Methanothermus (1)
       Methanopyrus (1)
       Archaeoglobus (5)
       Ferroglobus (1)
       Geoglobus (2)
       Thermoplasma (2)
       Picrophilus (1)
       Ferroplasma (2)
       Cuniculiplasma (1)
       Unclassified Thermoplasmatales (1)
       Methanomethylophilus (1)
       Methanomassiliicoccus (1)
       Methanoplasma (1)
       Unclassified Thermoplasmata (1)
       Aciduliprofundum (2)
       Pyrococcus (8)
       Thermococcus (27)
       Palaeococcus (1)
       Methanosarcina (23)
       Methanococcoides (2)
       Methanohalophilus (2)
       Methanohalobium (1)
       Methanosalsum (1)
       Methanolobus (1)
       Methanomethylovorans (1)
       Methanosaeta (3)
       Methanospirillum (1)
       Methanocorpusculum (1)
       Methanoculleus (3)
       Methanolacinia (1)
       Methanoregula (2)
       Methanosphaerula (1)
       Methanocella (3)
       Halobacterium (4)
       Halalkalicoccus (1)
       Halodesulfurarchaeum (2)
       Halanaeroarchaeum (2)
       Salarchaeum (1)
       Haloarcula (6)
       Natronomonas (2)
       Halorhabdus (3)
       Halomicrobium (3)
       Halorientalis (1)
       Halapricum (1)
       Unclassified Haloarculaceae (1)
       Haloquadratum (2)
       Haloferax (4)
       Halogeometricum (1)
       Haloplanus (4)
       Halobellus (1)
       Haloprofundus (1)
       Halorubrum (5)
       Salinigranum (1)
       Halohasta (1)
       Halolamina (1)
       Halalkaliarchaeum (1)
       Unclassified Haloferacales (1)
       Haloterrigena (3)
       Natrialba (1)
       Halopiger (1)
       Natrinema (4)
       Natronobacterium (1)
       Halovivax (1)
       Natronococcus (1)
       Salinarchaeum (1)
       Halostagnicola (1)
       Halobiforma (1)
       Natronolimnobius (3)
       Natronorubrum (2)
       Natrialbaceae (1)
       Unclassified Nanohaloarchaea (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Crenarchaeota (71)
       Aeropyrum (2)
       Staphylothermus (2)
       Ignicoccus (2)
       Desulfurococcus (3)
       Thermosphaera (1)
       Ignisphaera (1)
       Thermogladius (1)
       Hyperthermus (1)
       Pyrolobus (1)
       Pyrodictium (1)
       Sulfurisphaera (2)
       Saccharolobus (5)
       Sulfolobus (15)
       Metallosphaera (5)
       Acidianus (5)
       Sulfodiicoccus (1)
       Stygiolobus (1)
       Sulfuracidifex (1)
       Pyrobaculum (8)
       Caldivirga (1)
       Thermoproteus (2)
       Vulcanisaeta (2)
       Thermofilum (4)
       Acidilobus (2)
       Caldisphaera (1)
       Fervidicoccus (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Thaumarchaeota (18)
       Nitrosopumilus (6)
       Nitrosomarinus (1)
       Cenarchaeum (1)
       Nitrososphaera (3)
       Nitrosocosmicus (2)
       Nitrosocaldus (1)
       Caldiarchaeum (1)
       Nitrosopelagicus (1)
       Nitrosotenuis (1)
       Nitrosotalea (1)
 
 
 
 
 
 
 
 
 
 
     Korarchaeota (1)
       Korarchaeum (1)
 
     Bathyarchaeota (2)
       Unclassified Bathyarchaeota (2)
 
     Geothermarchaeota (1)
       Conexivisphaera (1)
 
     Nanoarchaeota (2)
       Nanoarchaeum (1)
       Nanopusillus (1)
 
 
     Micrarchaeota (1)
       Candidatus Mancarchaeum (1)
 
     Lokiarchaeota (2)
       Lokiarchaeum (1)
       Prometheoarchaeum (1)
 
 
     Unclassified Archaea (2)

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Last updated: July 1, 2020

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