KEGG Organisms

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 Eukaryotes (541)
 
   Animals (250)
     Vertebrates (146)
       Mammals (66)
         hsa  Homo sapiens (human)
         ptr  Pan troglodytes (chimpanzee)
         pps  Pan paniscus (bonobo)
         ggo  Gorilla gorilla gorilla (western lowland gorilla)
         pon  Pongo abelii (Sumatran orangutan)
         nle  Nomascus leucogenys (northern white-cheeked gibbon)
         mcc  Macaca mulatta (rhesus monkey)
         mcf  Macaca fascicularis (crab-eating macaque)
         csab  Chlorocebus sabaeus (green monkey)
         rro  Rhinopithecus roxellana (golden snub-nosed monkey)
         rbb  Rhinopithecus bieti (black snub-nosed monkey)
         cjc  Callithrix jacchus (white-tufted-ear marmoset)
         sbq  Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
         mmu  Mus musculus (mouse)
         mcal  Mus caroli (Ryukyu mouse)
         mpah  Mus pahari (shrew mouse)
         rno  Rattus norvegicus (rat)
         mun  Meriones unguiculatus (Mongolian gerbil)
         cge  Cricetulus griseus (Chinese hamster)
         ngi  Nannospalax galili (Upper Galilee mountains blind mole rat)
         hgl  Heterocephalus glaber (naked mole rat)
         ccan  Castor canadensis (American beaver)
         ocu  Oryctolagus cuniculus (rabbit)
         tup  Tupaia chinensis (Chinese tree shrew)
         cfa  Canis familiaris (dog)
         vvp  Vulpes vulpes (red fox)
         aml  Ailuropoda melanoleuca (giant panda)
         umr  Ursus maritimus (polar bear)
         uah  Ursus arctos horribilis
         oro  Odobenus rosmarus divergens (Pacific walrus)
         elk  Enhydra lutris kenyoni (northern sea otter)
         fca  Felis catus (domestic cat)
         ptg  Panthera tigris altaica (Amur tiger)
         ppad  Panthera pardus (leopard)
         aju  Acinonyx jubatus (cheetah)
         bta  Bos taurus (cow)
         bom  Bos mutus (wild yak)
         biu  Bos indicus (zebu cattle)
         bbub  Bubalus bubalis (water buffalo)
         chx  Capra hircus (goat)
         oas  Ovis aries (sheep)
         ssc  Sus scrofa (pig)
         cfr  Camelus ferus (Wild Bactrian camel)
         cdk  Camelus dromedarius (Arabian camel)
         bacu  Balaenoptera acutorostrata scammoni (minke whale)
         lve  Lipotes vexillifer (Yangtze River dolphin)
         oor  Orcinus orca (killer whale)
         dle  Delphinapterus leucas (beluga whale)
         pcad  Physeter catodon (sperm whale)
         ecb  Equus caballus (horse)
         epz  Equus przewalskii (Przewalski's horse)
         eai  Equus asinus (ass)
         myb  Myotis brandtii (Brandt's bat)
         myd  Myotis davidii
         mna  Miniopterus natalensis
         hai  Hipposideros armiger (great roundleaf bat)
         dro  Desmodus rotundus (common vampire bat)
         pale  Pteropus alecto (black flying fox)
         ray  Rousettus aegyptiacus (Egyptian rousette)
         mjv  Manis javanica (Malayan pangolin)
         lav  Loxodonta africana (African savanna elephant)
         tmu  Trichechus manatus latirostris (Florida manatee)
         mdo  Monodelphis domestica (opossum)
         shr  Sarcophilus harrisii (Tasmanian devil)
         pcw  Phascolarctos cinereus (koala)
         oaa  Ornithorhynchus anatinus (platypus)
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       Birds (24)
         gga  Gallus gallus (chicken)
         mgp  Meleagris gallopavo (turkey)
         cjo  Coturnix japonica (Japanese quail)
         nmel  Numida meleagris (helmeted guineafowl)
         acyg  Anser cygnoides domesticus (swan goose)
         tgu  Taeniopygia guttata (zebra finch)
         lsr  Lonchura striata domestica (Bengalese finch)
         scan  Serinus canaria (common canary)
         gfr  Geospiza fortis (medium ground-finch)
         fab  Ficedula albicollis (collared flycatcher)
         phi  Pseudopodoces humilis (Tibetan ground-tit)
         pmaj  Parus major (Great Tit)
         ccae  Cyanistes caeruleus (blue tit)
         ccw  Corvus cornix (hooded crow)
         etl  Empidonax traillii (willow flycatcher)
         fpg  Falco peregrinus (peregrine falcon)
         fch  Falco cherrug (Saker falcon)
         clv  Columba livia (rock pigeon)
         egz  Egretta garzetta (little egret)
         nni  Nipponia nippon (crested ibis)
         acun  Athene cunicularia (burrowing owl)
         padl  Pygoscelis adeliae (Adelie penguin)
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       Reptiles (12)
         asn  Alligator sinensis (Chinese alligator)
         amj  Alligator mississippiensis (American alligator)
         pss  Pelodiscus sinensis (Chinese soft-shelled turtle)
         cmy  Chelonia mydas (green sea turtle)
         cpic  Chrysemys picta (western painted turtle)
         acs  Anolis carolinensis (green anole)
         pvt  Pogona vitticeps (central bearded dragon)
         pbi  Python bivittatus (Burmese python)
         pmur  Protobothrops mucrosquamatus (Taiwan habu)
         tsr  Thamnophis sirtalis
         pmua  Podarcis muralis (common wall lizard)
         gja  Gekko japonicus
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       Amphibians (3)
         xla  Xenopus laevis (African clawed frog)
         xtr  Xenopus tropicalis (western clawed frog)
         npr  Nanorana parkeri
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       Fishes (39)
         dre  Danio rerio (zebrafish)
         srx  Sinocyclocheilus rhinocerous
         sanh  Sinocyclocheilus anshuiensis
         sgh  Sinocyclocheilus grahami
         ccar  Cyprinus carpio (common carp)
         ipu  Ictalurus punctatus (channel catfish)
         phyp  Pangasianodon hypophthalmus (striped catfish)
         amex  Astyanax mexicanus (Mexican tetra)
         eee  Electrophorus electricus (electric eel)
         tru  Takifugu rubripes (torafugu)
         tng  Tetraodon nigroviridis (spotted green pufferfish)
         lco  Larimichthys crocea (large yellow croaker)
         ncc  Notothenia coriiceps (black rockcod)
         mze  Maylandia zebra (zebra mbuna)
         onl  Oreochromis niloticus (Nile tilapia)
         ola  Oryzias latipes (Japanese medaka)
         xma  Xiphophorus maculatus (southern platyfish)
         xco  Xiphophorus couchianus (Monterrey platyfish)
         pret  Poecilia reticulata (guppy)
         cvg  Cyprinodon variegatus (sheepshead minnow)
         nfu  Nothobranchius furzeri (turquoise killifish)
         kmr  Kryptolebias marmoratus (mangrove rivulus)
         alim  Austrofundulus limnaeus (annual killifish)
         aoce  Amphiprion ocellaris (clown anemonefish)
         csem  Cynoglossus semilaevis (tongue sole)
         pov  Paralichthys olivaceus (Japanese flounder)
         lcf  Lates calcarifer (barramundi perch)
         sdu  Seriola dumerili (greater amberjack)
         slal  Seriola lalandi dorsalis (Yellowtail amberjack)
         hcq  Hippocampus comes (tiger tail seahorse)
         bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
         malb  Monopterus albus (swamp eel)
         sasa  Salmo salar (Atlantic salmon)
         otw  Oncorhynchus tshawytscha (Chinook salmon)
         salp  Salvelinus alpinus (Arctic char)
         els  Esox lucius (northern pike)
         sfm  Scleropages formosus (Asian bonytongue)
         pki  Paramormyrops kingsleyae
         lcm  Latimeria chalumnae (coelacanth)
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       Cartilaginous fishes (2)
         cmk  Callorhinchus milii (elephant shark)
         rtp  Rhincodon typus (whale shark)
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     Lancelets (1)
       bfo  Branchiostoma floridae (Florida lancelet)
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     Ascidians (1)
     Echinoderms (2)
       spu  Strongylocentrotus purpuratus (purple sea urchin)
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     Hemichordates (1)
       sko  Saccoglossus kowalevskii (acorn worm)
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     Arthropods (72)
       Insects (65)
         dme  Drosophila melanogaster (fruit fly)
         der  Drosophila erecta
         dse  Drosophila sechellia
         dsi  Drosophila simulans
         dya  Drosophila yakuba
         dan  Drosophila ananassae
         dsr  Drosophila serrata
         dpo  Drosophila pseudoobscura pseudoobscura
         dpe  Drosophila persimilis
         dmn  Drosophila miranda
         dwi  Drosophila willistoni
         dgr  Drosophila grimshawi
         dmo  Drosophila mojavensis
         daz  Drosophila arizonae
         dnv  Drosophila navojoa
         dhe  Drosophila hydei
         dvi  Drosophila virilis
         mde  Musca domestica (house fly)
         lcq  Lucilia cuprina (Australian sheep blowfly)
         aga  Anopheles gambiae (mosquito)
         aag  Aedes aegypti (yellow fever mosquito)
         aalb  Aedes albopictus (Asian tiger mosquito)
         cqu  Culex quinquefasciatus (southern house mosquito)
         bim  Bombus impatiens (common eastern bumble bee)
         bter  Bombus terrestris (buff-tailed bumblebee)
         soc  Solenopsis invicta (red fire ant)
         mpha  Monomorium pharaonis (pharaoh ant)
         aec  Acromyrmex echinatior (Panamanian leafcutter ant)
         acep  Atta cephalotes (leaf cutting ant)
         pbar  Pogonomyrmex barbatus (red harvester ant)
         vem  Vollenhovia emeryi
         hst  Harpegnathos saltator (Jerdon's jumping ant)
         cfo  Camponotus floridanus (Florida carpenter ant)
         lhu  Linepithema humile (Argentine ant)
         pcf  Polistes canadensis
         nvi  Nasonia vitripennis (jewel wasp)
         tca  Tribolium castaneum (red flour beetle)
         dpa  Dendroctonus ponderosae (mountain pine beetle)
         nvl  Nicrophorus vespilloides
         bmor  Bombyx mori (domestic silkworm)
         dpl  Danaus plexippus (monarch butterfly)
         pmac  Papilio machaon (common yellow swallowtail)
         prap  Pieris rapae (cabbage white)
         haw  Helicoverpa armigera (cotton bollworm)
         tnl  Trichoplusia ni (cabbage looper)
         pxy  Plutella xylostella (diamondback moth)
         zne  Zootermopsis nevadensis
         fcd  Folsomia candida
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       Crustaceans (2)
         dpx  Daphnia pulex (common water flea)
         pvm  Penaeus vannamei (Pacific white shrimp)
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       Chelicerates (5)
         isc  Ixodes scapularis (black-legged tick)
         dpte  Dermatophagoides pteronyssinus (European house dust mite)
         cscu  Centruroides sculpturatus (bark scorpion)
         ptep  Parasteatoda tepidariorum (common house spider)
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     Nematodes (6)
       cel  Caenorhabditis elegans (nematode)
       cbr  Caenorhabditis briggsae
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     Annelids (1)
     Mollusks (5)
       pcan  Pomacea canaliculata (golden apple snail)
       crg  Crassostrea gigas (Pacific oyster)
       myi  Mizuhopecten yessoensis (Yesso scallop)
       obi  Octopus bimaculoides
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     Brachiopodas (1)
       lak  Lingula anatina
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     Flatworms (4)
     Cnidarians (8)
       nve  Nematostella vectensis (sea anemone)
       epa  Exaiptasia pallida
       adf  Acropora digitifera (stony coral)
       amil  Acropora millepora
       pdam  Pocillopora damicornis (lace coral)
       spis  Stylophora pistillata
       dgt  Dendronephthya gigantea (soft corals)
       hmg  Hydra vulgaris
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     Placozoans (1)
       tad  Trichoplax adhaerens
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     Poriferans (1)
 
   Plants (106)
     Eudicots (75)
       Mustard family (9)
       Caper family (1)
       Papaya family (1)
       Rue family (2)
       Mallow family (5)
       Myrtle family (1)
       Pea family (13)
       Rose family (7)
       Buckthorn family (1)
       Cucumber family (6)
       Spurge family (4)
       Willow family (2)
       Walnut family (1)
       Beech family (1)
         qsu  Quercus suber (cork oak)
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       Grape family (1)
       Nightshade family (8)
       Morning-glory family (1)
       Sesame family (1)
       Olive family (1)
       Daisy family (3)
       Parsley family (1)
       Amaranth family (3)
       Lotus family (1)
       Poppy family (1)
     Monocots (14)
       Grass family (8)
       Palm family (2)
       Banana family (1)
       Orchid family (2)
       Asparagus family (1)
 
 
 
 
 
     Basal Magnoliophyta (1)
       Amborella family (1)
 
     Ferns (1)
     Mosses (1)
     Green algae (11)
       vcn  Volvox carteri f. nagariensis
       csl  Coccomyxa subellipsoidea
       cvr  Chlorella variabilis
       ota  Ostreococcus tauri
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     Red algae (3)
       cme  Cyanidioschyzon merolae
       gsl  Galdieria sulphuraria
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   Fungi (133)
     Ascomycetes (95)
       Saccharomycetes (32)
         kla  Kluyveromyces lactis
         kmx  Kluyveromyces marxianus
         lth  Lachancea thermotolerans
         vpo  Vanderwaltozyma polyspora
         zro  Zygosaccharomyces rouxii
         ncs  Naumovozyma castellii
         ndi  Naumovozyma dairenensis
         tpf  Tetrapisispora phaffii
         tdl  Torulaspora delbrueckii
         ppa  Komagataella phaffii
         dha  Debaryomyces hansenii
         pic  Scheffersomyces stipitis
         pgu  Meyerozyma guilliermondii
         spaa  Spathaspora passalidarum
         lel  Lodderomyces elongisporus
         cal  Candida albicans
         ctp  Candida tropicalis
         cot  Candida orthopsilosis
         cdu  Candida dubliniensis
         cten  Yamadazyma tenuis
         yli  Yarrowia lipolytica
         clu  Clavispora lusitaniae ATCC 42720
         clus  Clavispora lusitaniae CBS 6936
         caur  Candida auris
         slb  Sugiyamaella lignohabitans
         pkz  Pichia kudriavzevii
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       Sordariomycetes (27)
         ncr  Neurospora crassa
         nte  Neurospora tetrasperma
         smp  Sordaria macrospora
         pan  Podospora anserina
         ttt  Thermothielavioides terrestris
         mtm  Thermothelomyces thermophilus
         cthr  Chaetomium thermophilum
         mgr  Pyricularia oryzae
         ssck  Sporothrix schenckii
         fgr  Fusarium graminearum
         fpu  Fusarium pseudograminearum
         fvr  Fusarium verticillioides
         fox  Fusarium oxysporum
         nhe  Nectria haematococca
         tre  Trichoderma reesei QM6a
         trr  Trichoderma reesei RUT C-30
         maw  Metarhizium acridum
         maj  Metarhizium robertsii
         cmt  Cordyceps militaris
         plj  Purpureocillium lilacinum
         val  Verticillium alfalfae
         vda  Verticillium dahliae
         cfj  Colletotrichum fioriniae
         sapo  Scedosporium apiospermum
         ela  Eutypa lata
         pfy  Pestalotiopsis fici
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       Leotiomycetes (5)
         ssl  Sclerotinia sclerotiorum
         bfu  Botrytis cinerea
         mbe  Marssonina brunnea
         psco  Phialocephala scopiformis
         glz  Glarea lozoyensis
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       Eurotiomycetes (19)
         ani  Aspergillus nidulans
         afm  Aspergillus fumigatus
         act  Aspergillus clavatus
         nfi  Aspergillus fischeri
         aor  Aspergillus oryzae
         ang  Aspergillus niger
         afv  Aspergillus flavus
         pcs  Penicillium rubens
         pdp  Penicillium digitatum
         tmf  Talaromyces marneffei
         cim  Coccidioides immitis
         cpw  Coccidioides posadasii
         pbl  Paracoccidioides lutzii Pb01
         pbn  Paracoccidioides brasiliensis
         ure  Uncinocarpus reesii
         abe  Trichophyton benhamiae
         tve  Trichophyton verrucosum
         aje  Histoplasma capsulatum
         bgh  Blastomyces gilchristii
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       Dothideomycetes (10)
         pno  Parastagonospora nodorum
         pte  Pyrenophora teres
         bze  Bipolaris zeicola
         bsc  Bipolaris sorokiniana
         bor  Bipolaris oryzae
         aalt  Alternaria alternata
         ztr  Zymoseptoria tritici
         pfj  Pseudocercospora fijiensis
         bcom  Baudoinia panamericana
         npa  Neofusicoccum parvum
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       Pezizomycetes (1)
         tml  Tuber melanosporum
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       Schizosaccharomycetes (1)
         spo  Schizosaccharomyces pombe (fission yeast)
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     Basidiomycetes (33)
       cne  Cryptococcus neoformans var. neoformans JEC21
       cnb  Cryptococcus neoformans var. neoformans B-3501A
       cgi  Cryptococcus gattii
       tms  Tremella mesenterica
       tasa  Trichosporon asahii var. asahii
       ppl  Postia placenta
       tvs  Trametes versicolor
       dsq  Dichomitus squalens
       pco  Phanerochaete carnosa
       shs  Stereum hirsutum
       hir  Heterobasidion irregulare
       psq  Punctularia strigosozonata
       adl  Auricularia subglabra
       fme  Fomitiporia mediterranea
       gtr  Gloeophyllum trabeum
       mpr  Moniliophthora perniciosa
       mrr  Moniliophthora roreri
       cci  Coprinopsis cinerea
       scm  Schizophyllum commune
       abp  Agaricus bisporus var. burnettii JB137-S8
       abv  Agaricus bisporus var. bisporus H97
       cput  Coniophora puteana
       sla  Serpula lacrymans
       wse  Wallemia mellicola
       wic  Wallemia ichthyophaga
       uma  Ustilago maydis
       pfp  Anthracocystis flocculosa
       mgl  Malassezia globosa
       mrt  Malassezia restricta
       msym  Malassezia sympodialis
       pgr  Puccinia graminis
       mlr  Melampsora larici-populina
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     Microsporidians (5)
 
   Protists (52)
     Choanoflagellates (2)
       mbr  Monosiga brevicollis
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     Amoebozoa (7)
       Dictyostelia (3)
         ddi  Dictyostelium discoideum (cellular slime mold)
         dpp  Dictyostelium purpureum (cellular slime mold)
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       Entamoeba (3)
       Acanthamoeba (1)
     Alveolates (21)
       Apicomplexans (18)
       Ciliates (2)
       Dinoflagellates (1)
 
 
 
     Stramenopiles (8)
       Diatoms (3)
         fcy  Fragilariopsis cylindrus
         tps  Thalassiosira pseudonana
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       Eustigmatophytes (1)
       Pelagophytes (1)
       Oomycetes (3)
         pif  Phytophthora infestans
         psoj  Phytophthora sojae
         spar  Saprolegnia parasitica
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     Haptophyta (1)
       ehx  Emiliania huxleyi
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     Cryptomonads (1)
     Euglenozoa (9)
       Kinetoplasts (9)
 
     Heterolobosea (1)
       Tetramitia (1)
 
     Metamonada (2)
       Trichomonads (1)
       Diplomonads (1)
 
 
 
 Prokaryotes (6085)
 
   Bacteria (5762)
     Gammaproteobacteria - Enterobacteria (510)
       Escherichia (69)
       Salmonella (54)
         sty  Salmonella enterica subsp. enterica serovar Typhi CT18
         stt  Salmonella enterica subsp. enterica serovar Typhi Ty2
         sex  Salmonella enterica subsp. enterica serovar Typhi P-stx-12
         sent  Salmonella enterica subsp. enterica serovar Typhi Ty21a
         stm  Salmonella enterica subsp. enterica serovar Typhimurium LT2
         seo  Salmonella enterica subsp. enterica serovar Typhimurium 14028S
         sev  Salmonella enterica subsp. enterica serovar Typhimurium D23580
         sey  Salmonella enterica subsp. enterica serovar Typhimurium SL1344
         sem  Salmonella enterica subsp. enterica serovar Typhimurium T000240
         sej  Salmonella enterica subsp. enterica serovar Typhimurium UK-1
         seb  Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
         sef  Salmonella enterica subsp. enterica serovar Typhimurium 798
         setu  Salmonella enterica subsp. enterica serovar Typhimurium U288
         setc  Salmonella enterica subsp. enterica serovar Typhimurium var. 5- CFSAN001921
         senr  Salmonella enterica subsp. enterica serovar Typhimurium DT2
         send  Salmonella enterica subsp. enterica serovar Typhimurium DT104
         seni  Salmonella enterica subsp. enterica serovar Typhimurium 138736
         seen  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736
         spt  Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150
         sek  Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601
         spq  Salmonella enterica subsp. enterica serovar Paratyphi B
         sei  Salmonella enterica subsp. enterica serovar Paratyphi C
         sec  Salmonella enterica subsp. enterica serovar Choleraesuis
         seh  Salmonella enterica subsp. enterica serovar Heidelberg SL476
         shb  Salmonella enterica subsp. enterica serovar Heidelberg B182
         senh  Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069
         seeh  Salmonella enterica subsp. enterica serovar Heidelberg 41578
         see  Salmonella enterica subsp. enterica serovar Newport SL254
         senn  Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1
         sew  Salmonella enterica subsp. enterica serovar Schwarzengrund
         sea  Salmonella enterica subsp. enterica serovar Agona SL483
         sens  Salmonella enterica subsp. enterica serovar Agona 24249
         sed  Salmonella enterica subsp. enterica serovar Dublin
         seg  Salmonella enterica subsp. enterica serovar Gallinarum 287/91
         sel  Salmonella enterica subsp. enterica serovar Gallinarum/pullorum RKS5078
         sega  Salmonella enterica subsp. enterica serovar Gallinarum/pullorum CDC1983-67
         set  Salmonella enterica subsp. enterica serovar Enteritidis P125109
         sena  Salmonella enterica subsp. enterica serovar Enteritidis EC20090135
         seno  Salmonella enterica subsp. enterica serovar Enteritidis EC20090193
         senv  Salmonella enterica subsp. enterica serovar Enteritidis EC20090332
         senq  Salmonella enterica subsp. enterica serovar Enteritidis EC20090531
         senl  Salmonella enterica subsp. enterica serovar Enteritidis OLF-SE1-1019-1
         senj  Salmonella enterica subsp. enterica serovar Javiana
         seec  Salmonella enterica subsp. enterica serovar Cubana
         seeb  Salmonella enterica subsp. enterica serovar Bareilly
         seep  Salmonella enterica subsp. enterica serovar Pullorum
         senb  Salmonella enterica subsp. enterica serovar Bovismorbificans
         sene  Salmonella enterica subsp. enterica serovar Thompson
         senc  Salmonella enterica subsp. enterica serovar Tennessee
         ses  Salmonella enterica subsp. arizonae
         salz  Salmonella sp. SSDFZ69
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       Shigella (13)
       Enterobacter (31)
         enf  Enterobacter sp. FY-07
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       Cronobacter (11)
       Klebsiella (42)
         kpy  Klebsiella pneumoniae subsp. pneumoniae KPNIH31
         kqv  Klebsiella quasivariicola
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       Citrobacter (15)
       Gibbsiella (1)
         gqu  Gibbsiella quercinecans
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       Blochmannia (6)
       Hamiltonella (1)
       Unclassified aphid symbionts (2)
       Unclassified mealybug symbionts (1)
       Riesia (2)
       Moranella (2)
       Shimwellia (1)
         ebt  Shimwellia blattae
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       Raoultella (6)
       Cedecea (4)
       Pluralibacter (3)
       Kosakonia (5)
         kor  Kosakonia oryzae
         krd  Kosakonia radicincitans
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       Kluyvera (2)
       Ishikawaella (1)
       Leclercia (6)
       Lelliottia (4)
       Limnobaculum (1)
       Buttiauxella (1)
       Tachikawaea (1)
       Doolittlea (1)
       Hoaglandella (1)
       Gullanella (1)
       Mikella (1)
       Purcelliella (1)
       Metakosakonia (1)
         mety  Metakosakonia sp. MRY16-398
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       Atlantibacter (1)
       Izhakiella (1)
         izh  Izhakiella sp. KSNA2
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       Yokenella (1)
         yre  Yokenella regensburgei
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       Scandinavium (1)
       Unclassified Enterobacteria (4)
         ebc  Enterobacteriaceae bacterium ENNIH2
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       Yersinia (46)
       Serratia (24)
         sera  Serratia sp. ATCC 39006
         serq  Serratia sp. ATCC 39006
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       Chania (1)
       Rahnella (4)
         rah  Rahnella sp. Y9602
         raq  Rahnella aquatilis CIP 78.65 = ATCC 33071
         raa  Rahnella aquatilis HX2
         rox  Rahnella sp. ERMR1:05
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       Fukatsuia (1)
       Pectobacterium (13)
         eca  Pectobacterium atrosepticum SCRI1043
         patr  Pectobacterium atrosepticum JG10-08
         pato  Pectobacterium atrosepticum 21A
         pct  Pectobacterium carotovorum subsp. carotovorum PC1
         pcc  Pectobacterium carotovorum subsp. carotovorum PCC21
         pcv  Pectobacterium odoriferum
         pwa  Pectobacterium parmentieri WPP163
         ppar  Pectobacterium parmentieri RNS08.42.1A
         pec  Pectobacterium parmentieri SCC3193
         pws  Pectobacterium wasabiae
         ppoa  Pectobacterium polaris
         pbra  Pectobacterium brasiliense
         ppuj  Pectobacterium punjabense
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       Sodalis (4)
       Dickeya (11)
         ddd  Dickeya dadantii 3937
         dda  Dickeya paradisiaca
         dze  Dickeya chrysanthemi
         ddc  Dickeya zeae Ech586
         dzc  Dickeya zeae EC1
         dso  Dickeya solani IPO 2222
         ced  Dickeya fangzhongdai ND14b
         dfn  Dickeya fangzhongdai DSM 101947
         ddq  Dickeya dianthicola
         daq  Dickeya aquatica
         dic  Dickeya sp. NCPPB 569
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       Brenneria (3)
         bgj  Brenneria goodwinii
         brb  Brenneria rubrifaciens
         bng  Brenneria nigrifluens
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       Lonsdalea (1)
         lbq  Lonsdalea britannica
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       Erwinia (11)
       Buchnera (18)
       Wigglesworthia (2)
       Pantoea (17)
         pao  Pantoea sp. At-9b
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       Mixta (4)
         mint  Mixta intestinalis
         mthi  Mixta theicola
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       Tatumella (2)
       Photorhabdus (4)
       Proteus (8)
         pmr  Proteus mirabilis HI4320
         pmib  Proteus mirabilis BB2000
         pvl  Proteus mirabilis CYPV1
         pvg  Proteus vulgaris
         phau  Proteus hauseri
         prot  Proteus sp. CD3
         pcib  Proteus cibarius
         pcol  Proteus columbae
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       Xenorhabdus (7)
       Providencia (9)
         psi  Providencia stuartii MRSN 2154
         psx  Providencia stuartii ATCC 33672
         psta  Providencia stuartii BE2467
         prg  Providencia rettgeri
         pala  Providencia alcalifaciens
         phei  Providencia heimbachae
         prq  Providencia sp. WCHPHu000369
         prj  Providencia rustigianii
         pvc  Providencia vermicola
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       Morganella (1)
       Arsenophonus (3)
       Edwardsiella (8)
         etr  Edwardsiella tarda EIB202
         etd  Edwardsiella tarda FL6-60
         ete  Edwardsiella anguillarum
         etc  Edwardsiella piscicida C07-087
         edw  Edwardsiella sp. EA181011
         edl  Edwardsiella sp. LADL05-105
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       Hafnia (2)
         hpar  Hafnia paralvei
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       Obesumbacterium (1)
       Pragia (2)
       Leminorella (1)
       Phytobacter (2)
         kin  Phytobacter ursingii
         pdz  Phytobacter diazotrophicus
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       Plesiomonas (1)
     Gammaproteobacteria - Others (837)
       Haemophilus (22)
       Glaesserella (5)
       Histophilus (2)
       Pasteurella (7)
       Basfia (2)
       Mannheimia (15)
       Actinobacillus (10)
       Aggregatibacter (9)
       Gallibacterium (1)
       Bibersteinia (4)
       Avibacterium (2)
       Rodentibacter (2)
       Otariodibacter (1)
       Frederiksenia (1)
       Xylella (9)
       Xanthomonas (38)
       Stenotrophomonas (11)
       Pseudoxanthomonas (3)
       Lysobacter (11)
       Luteimonas (3)
       Thermomonas (2)
       Pseudolysobacter (1)
       Frateuria (1)
       Rhodanobacter (2)
       Dyella (4)
       Dokdonella (1)
       Luteibacter (2)
       Ahniella (1)
       Aerosticca (1)
       Vibrio (53)
         vna  Vibrio natriegens
         vej  Vibrio sp. EJY3
         vcy  Vibrio coralliilyticus RE98
         vct  Vibrio coralliilyticus OCN014
         vga  Vibrio gazogenes
         vas  Vibrio astriarenae
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       Aliivibrio (4)
       Photobacterium (3)
         ppr  Photobacterium profundum
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       Grimontia (1)
       Paraphotobacterium (1)
       Salinivibrio (3)
       Pseudomonas (114)
         pae  Pseudomonas aeruginosa PAO1
         paev  Pseudomonas aeruginosa PAO1-VE13
         paei  Pseudomonas aeruginosa PAO1-VE2
         pau  Pseudomonas aeruginosa UCBPP-PA14
         pap  Pseudomonas aeruginosa PA7
         pag  Pseudomonas aeruginosa LESB58
         paf  Pseudomonas aeruginosa M18
         pnc  Pseudomonas aeruginosa NCGM2.S1
         paeb  Pseudomonas aeruginosa NCGM 1900
         pdk  Pseudomonas aeruginosa DK2
         psg  Pseudomonas aeruginosa B136-33
         prp  Pseudomonas aeruginosa RP73
         paep  Pseudomonas aeruginosa PA1
         paer  Pseudomonas aeruginosa PA1R
         paem  Pseudomonas aeruginosa MTB-1
         pael  Pseudomonas aeruginosa LES431
         paes  Pseudomonas aeruginosa SCV20265
         paeu  Pseudomonas aeruginosa PA38182
         paeg  Pseudomonas aeruginosa YL84
         paec  Pseudomonas aeruginosa c7447m
         paeo  Pseudomonas aeruginosa PAO581
         pmy  Pseudomonas mendocina ymp
         pre  Pseudomonas resinovorans
         palc  Pseudomonas alcaligenes
         pfl  Pseudomonas protegens Pf-5
         pprc  Pseudomonas protegens CHA0
         ppro  Pseudomonas protegens Cab57
         pfo  Pseudomonas fluorescens Pf0-1
         pfe  Pseudomonas fluorescens F113
         pfc  Pseudomonas fluorescens A506
         pfb  Pseudomonas synxantha LBUM223
         pman  Pseudomonas mandelii
         ptv  Pseudomonas trivialis
         pcg  Pseudomonas corrugata
         pvr  Pseudomonas veronii
         pazo  Pseudomonas azotoformans
         pfw  Pseudomonas simiae PCL1751
         pff  Pseudomonas simiae PICF7
         pfx  Pseudomonas lurida
         pba  Pseudomonas brassicacearum subsp. brassicacearum NFM421
         ppuu  Pseudomonas sp. UW4
         pdr  Pseudomonas sp. ATCC 13867
         psk  Pseudomonas sp. TKP
         pkc  Pseudomonas knackmussii
         pch  Pseudomonas chlororaphis PA23
         pcz  Pseudomonas chlororaphis PCL1606
         pcp  Pseudomonas chlororaphis subsp. aurantiaca
         palk  Pseudomonas alkylphenolica
         psem  Pseudomonas sp. MRSN12121
         psos  Pseudomonas sp. Os17
         pkr  Pseudomonas koreensis
         pfk  Pseudomonas frederiksbergensis
         panr  Pseudomonas antarctica
         pset  Pseudomonas sp. TCU-HL1
         psil  Pseudomonas silesiensis
         pke  Pseudomonas kribbensis
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       Azotobacter (4)
       Oblitimonas (1)
       Permianibacter (1)
         pagr  Permianibacter aggregans
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       Psychrobacter (12)
       Acinetobacter (47)
       Moraxella (8)
       Unclassified Moraxellaceae (1)
       Shewanella (34)
       Idiomarina (5)
       Colwellia (7)
       Litorilituus (1)
       Thalassotalea (2)
         tht  Thalassotalea sp. HSM 43
         thap  Thalassotalea sp. PS06
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       Pseudoalteromonas (23)
         pat  Pseudoalteromonas atlantica
         pdj  Pseudoalteromonas donghaensis
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       Marinobacter (12)
       Alteromonas (23)
         amc  Alteromonas mediterranea DE
         amaa  Alteromonas mediterranea DE1
         amal  Alteromonas mediterranea U4
         amae  Alteromonas mediterranea U7
         amao  Alteromonas mediterranea U8
         amad  Alteromonas mediterranea UM4b
         amai  Alteromonas mediterranea UM7
         amag  Alteromonas mediterranea MED64
         amac  Alteromonas macleodii ATCC 27126
         amb  Alteromonas macleodii Balearic Sea AD45
         amg  Alteromonas macleodii English Channel 673
         amk  Alteromonas macleodii Black Sea 11
         alt  Alteromonas naphthalenivorans
         aal  Alteromonas australica H 17
         aaus  Alteromonas australica DE170
         asp  Alteromonas stellipolaris LMG 21856
         asq  Alteromonas stellipolaris LMG 21861
         aaw  Alteromonas addita
         alr  Alteromonas sp. RKMC-009
         ale  Alteromonas sp. Mac1
         alz  Alteromonas sp. Mac2
         apel  Alteromonas pelagimontana
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       Glaciecola (2)
         gag  Glaciecola sp. 4H-3-7+YE-5
         gni  Glaciecola nitratireducens
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       Paraglaciecola (2)
         gps  Paraglaciecola psychrophila
         pmes  Paraglaciecola mesophila
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       Lacimicrobium (1)
         lal  Lacimicrobium alkaliphilum
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       Catenovulum (1)
       Saliniradius (1)
         salh  Saliniradius amylolyticus
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       Salinimonas (2)
         salm  Salinimonas sediminis
         salk  Salinimonas sp. KX18D6
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       Hydrocarboniclastica (1)
       Psychromonas (2)
       Ferrimonas (2)
       Moritella (3)
       Cellvibrio (5)
       Saccharophagus (1)
       Teredinibacter (1)
       Simiduia (1)
         saga  Simiduia agarivorans
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       Spongiibacter (1)
         spoi  Spongiibacter sp. IMCC21906
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       Zhongshania (1)
         zal  Zhongshania aliphaticivorans
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       Oceanicoccus (1)
         osg  Oceanicoccus sagamiensis
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       Microbulbifer (6)
       Halioglobus (2)
         hja  Halioglobus japonicus
         halc  Halioglobus maricola
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       Kineobactrum (1)
         kim  Kineobactrum sp. M2
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       Coxiella (8)
       Rickettsiella (1)
       Aquicella (2)
         asip  Aquicella siphonis
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       Legionella (23)
         lpn  Legionella pneumophila subsp. pneumophila Philadelphia 1 (serogroup 1)
         lph  Legionella pneumophila subsp. pneumophila HL06041035 (serogroup 1)
         lpo  Legionella pneumophila subsp. pneumophila Lorraine (serogroup 1)
         lpu  Legionella pneumophila subsp. pneumophila LPE509
         lpm  Legionella pneumophila subsp. pneumophila Thunder Bay
         lpf  Legionella pneumophila Lens (serogroup 1)
         lpp  Legionella pneumophila Paris (serogroup 1)
         lpc  Legionella pneumophila Corby
         lpa  Legionella pneumophila 2300/99 Alcoy (serogroup 1)
         lpe  Legionella pneumophila subsp. pneumophila ATCC 43290 (serogroup 12)
         lfa  Legionella fallonii
         lha  Legionella hackeliae
         lok  Legionella oakridgensis
         lcd  Legionella clemsonensis
         llg  Legionella lansingensis
         lib  Legionella israelensis
         ljr  Legionella jordanis
         lwa  Legionella waltersii
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       Tatlockia (1)
         tmc  Tatlockia micdadei
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       Methylococcus (2)
         mca  Methylococcus capsulatus
         metu  Methylococcus sp. IM1
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       Methylomonas (5)
         mmt  Methylomonas methanica
         mdn  Methylomonas denitrificans
         mdh  Methylomonas sp. DH-1
         mko  Methylomonas koyamae
         metl  Methylomonas sp. LW13
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       Methylomicrobium (2)
         mah  Methylomicrobium alcaliphilum
         mbur  Methylomicrobium buryatense
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       Methylovulum (1)
         mpsy  Methylovulum psychrotolerans
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       Methylocaldum (1)
         mmai  Methylocaldum marinum
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       Methylospira (1)
         mmob  Candidatus Methylospira mobilis
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       Francisella (43)
       Allofrancisella (2)
       Hydrogenovibrio (2)
         tcx  Hydrogenovibrio crunogenus
         htr  Hydrogenovibrio thermophilus
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       Thiomicrospira (3)
         tcy  Thiomicrospira cyclica
         tao  Thiomicrospira aerophila
         thio  Thiomicrospira sp. S5
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       Methylophaga (2)
         mej  Methylophaga nitratireducenticrescens
         mec  Methylophaga frappieri
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       Cycloclasticus (3)
         cyq  Cycloclasticus sp. P1
         cza  Cycloclasticus zancles
         cyy  Cycloclasticus sp. PY97N
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       Piscirickettsia (1)
         psal  Piscirickettsia salmonis
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       Thiomicrorhabdus (1)
         thig  Thiomicrorhabdus sp. G1
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       Thioploca (1)
         tig  Thioploca ingrica
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       Beggiatoa (1)
         blep  Beggiatoa leptomitiformis
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       Nitrosococcus (4)
         noc  Nitrosococcus oceani
         nhl  Nitrosococcus halophilus
         nwa  Nitrosococcus watsonii
         nwr  Nitrosococcus wardiae
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       Allochromatium (1)
         alv  Allochromatium vinosum
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       Thiocystis (1)
       Thioflavicoccus (1)
       Marichromatium (1)
         mpur  Marichromatium purpuratum
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       Tenderia (1)
         tee  Candidatus Tenderia electrophaga
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       Nitrosoglobus (1)
         ntt  Candidatus Nitrosoglobus terrae
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       Thiodictyon (1)
         tsy  Candidatus Thiodictyon syntrophicum
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       Rheinheimera (1)
         rhh  Rheinheimera sp. D18
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       Thermochromatium (1)
       Alkalilimnicola (1)
         aeh  Alkalilimnicola ehrlichii
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       Halorhodospira (2)
         hha  Halorhodospira halophila
         hhk  Halorhodospira halochloris
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       Ectothiorhodospira (2)
         hhc  Ectothiorhodospira haloalkaliphila
         ebs  Ectothiorhodospira sp. BSL-9
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       Thioalkalivibrio (5)
         tgr  Thioalkalivibrio sulfidiphilus
         tkm  Thioalkalivibrio sp. K90mix
         tni  Thioalkalivibrio nitratireducens
         tti  Thioalkalivibrio paradoxus
         tvr  Thioalkalivibrio versutus
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       Spiribacter (4)
         ssal  Spiribacter salinus
         spiu  Spiribacter curvatus
         sros  Spiribacter roseus
         spiz  Spiribacter sp. 2438
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       Acidihalobacter (1)
       Halothiobacillus (2)
         hna  Halothiobacillus neapolitanus
         haz  Halothiobacillus sp. LS2
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       Wenzhouxiangella (1)
       Woeseia (1)
         woc  Woeseia oceani
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       Granulosicoccus (1)
         gai  Granulosicoccus antarcticus
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       Guyparkeria (1)
         ghl  Guyparkeria halophila
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       Thiohalobacter (1)
         ttc  Thiohalobacter thiocyanaticus
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       Hahella (2)
       Chromohalobacter (1)
       Halomonas (18)
       Portiera (9)
       Carsonella (7)
       Evansia (1)
       Zymobacter (1)
       Halotalea (1)
       Cobetia (1)
       Kushneria (3)
         kus  Kushneria konosiri
         kma  Kushneria marisflavi
         kuy  Kushneria sp. YCWA18
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       Pistricoccus (1)
       Alcanivorax (5)
         abo  Alcanivorax borkumensis
         adi  Alcanivorax dieselolei
         apac  Alcanivorax pacificus
         aln  Alcanivorax sp. NBRC 101098
         axe  Alcanivorax xenomutans
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       Ketobacter (1)
       Kangiella (4)
         kko  Kangiella koreensis
         kge  Kangiella geojedonensis
         ksd  Kangiella sediminilitoris
         kpd  Kangiella profundi
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       Marinomonas (3)
         mme  Marinomonas mediterranea
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       Thalassolituus (2)
       Oleispira (1)
       Marinobacterium (1)
         mars  Marinobacterium aestuarii
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       Bacterioplanes (1)
       Neptunomonas (1)
         ncu  Neptunomonas concharum
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       Nitrincola (1)
       Bermanella (1)
         bmar  Bermanella marisrubri
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       Gynuella (1)
       Reinekea (1)
       Oleiphilus (1)
         ome  Oleiphilus messinensis
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       Litoricola (1)
       Aeromonas (22)
       Tolumonas (1)
         tau  Tolumonas auensis
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       Oceanimonas (1)
       Oceanisphaera (2)
       Zobellella (1)
       Dichelobacter (1)
       Cardiobacterium (1)
         chj  Cardiobacterium hominis
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       Gilliamella (1)
         gap  Gilliamella apicola
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       Frischella (1)
       Orbus (1)
       Steroidobacter (1)
         sdf  Steroidobacter denitrificans
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       Solimonas (1)
         sok  Solimonas sp. K1W22B-7
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       Sinimarinibacterium (1)
       Immundisolibacter (1)
         gbi  Immundisolibacter cernigliae
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       Sulfuricaulis (1)
         slim  Sulfuricaulis limicola
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       Sulfurifustis (1)
         sva  Sulfurifustis variabilis
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       Acidiferrobacter (1)
         acii  Acidiferrobacter sp. SPIII_3
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       Salinisphaera (1)
       Thiolapillus (1)
         tbn  Thiolapillus brandeum
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       Sedimenticola (1)
         seds  Sedimenticola thiotaurini
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       Thioglobus (3)
         tsn  Candidatus Thioglobus singularis PS1
         thin  Candidatus Thioglobus sp. NP1
         tho  Candidatus Thioglobus autotrophicus
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       Pseudohongiella (1)
         pspi  Pseudohongiella spirulinae
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       Nardonella (1)
       Reidiella (1)
       Ruthia (1)
         rma  Candidatus Ruthia magnifica (Calyptogena magnifica)
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       Vesicomyosocius (1)
         vok  Candidatus Vesicomyosocius okutanii (Calyptogena okutanii)
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       Unclassified Gammaproteobacteria (6)
         ebh  Endosymbiont of Bathymodiolus septemdierum
         enm  Endosymbiont of unidentified scaly snail isolate Monju
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     Betaproteobacteria (445)
       Neisseria (29)
       Snodgrassella (1)
       Kingella (1)
       Vitreoscilla (2)
         vff  Vitreoscilla filiformis
         vit  Vitreoscilla sp. C1
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       Eikenella (2)
       Simonsiella (1)
       Unclassified Neisseriaceae (1)
         nba  Neisseriaceae bacterium DSM 100970
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       Chromobacterium (7)
       Iodobacter (1)
       Laribacter (1)
         lhk  Laribacter hongkongensis
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       Pseudogulbenkiania (1)
       Jeongeupia (1)
         jeu  Jeongeupia sp. USM3
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       Aquaspirillum (1)
       Aquitalea (2)
       Deefgea (1)
         dee  Deefgea sp. D17
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       Ralstonia (13)
         rso  Ralstonia solanacearum GMI1000
         rsl  Ralstonia solanacearum PSI07
         rsn  Ralstonia solanacearum Po82
         rsm  Ralstonia solanacearum CMR15
         rse  Ralstonia solanacearum FQY_4
         rsy  Ralstonia solanacearum UY031
         rpi  Ralstonia pickettii 12J
         rpf  Ralstonia pickettii 12D
         rpj  Ralstonia pickettii DTP0602
         rmn  Ralstonia mannitolilytica
         rin  Ralstonia insidiosa
         rpu  Ralstonia pseudosolanacearum
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       Cupriavidus (13)
         reh  Cupriavidus necator H16
         cnc  Cupriavidus necator N-1
         cuh  Cupriavidus necator NH9
         reu  Cupriavidus pinatubonensis JMP134
         rme  Cupriavidus metallidurans
         cti  Cupriavidus taiwanensis
         cbw  Cupriavidus basilensis
         cgd  Cupriavidus gilardii
         ccup  Cupriavidus sp. USMAHM13
         cup  Cupriavidus malaysiensis
         cuu  Cupriavidus sp. USMAA2-4
         cpau  Cupriavidus pauculus
         cox  Cupriavidus oxalaticus
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       Burkholderia (89)
         bma  Burkholderia mallei ATCC 23344
         bmv  Burkholderia mallei SAVP1
         bml  Burkholderia mallei NCTC 10229
         bmn  Burkholderia mallei NCTC 10247
         bmal  Burkholderia mallei 23344
         bmae  Burkholderia mallei 6
         bmaq  Burkholderia mallei BMQ
         bmai  Burkholderia mallei 2000031063
         bmaf  Burkholderia mallei FMH 23344
         bmaz  Burkholderia mallei NCTC 10247
         bmab  Burkholderia mallei 2002734299
         bps  Burkholderia pseudomallei K96243
         bpm  Burkholderia pseudomallei 1710b
         bpl  Burkholderia pseudomallei 1106a
         bpd  Burkholderia pseudomallei 668
         bpr  Burkholderia pseudomallei MSHR346
         bpse  Burkholderia pseudomallei MSHR305
         bpsm  Burkholderia pseudomallei MSHR511
         bpsu  Burkholderia pseudomallei MSHR146
         bpsd  Burkholderia pseudomallei MSHR520
         bpz  Burkholderia pseudomallei 1026b
         bpq  Burkholderia pseudomallei BPC006
         bpk  Burkholderia pseudomallei NCTC 13179
         bpsh  Burkholderia pseudomallei HBPUB10134a
         bpsa  Burkholderia pseudomallei NAU35A-3
         bpso  Burkholderia pseudomallei A79A
         but  Burkholderia pseudomallei TSV202
         bte  Burkholderia thailandensis E264
         btq  Burkholderia thailandensis 2002721723
         btj  Burkholderia thailandensis E444
         btz  Burkholderia thailandensis H0587
         btd  Burkholderia thailandensis MSMB121
         btv  Burkholderia thailandensis MSMB59
         bthe  Burkholderia thailandensis E254
         bthm  Burkholderia thailandensis USAMRU Malaysia #20
         btha  Burkholderia thailandensis 2003015869
         bthl  Burkholderia thailandensis 2002721643
         bok  Burkholderia oklahomensis E0147
         boc  Burkholderia oklahomensis C6786
         buu  Burkholderia sp. BDU6
         bvi  Burkholderia vietnamiensis G4
         bve  Burkholderia vietnamiensis LMG 10929
         bur  Burkholderia lata
         bcn  Burkholderia cenocepacia AU1054
         bch  Burkholderia cenocepacia HI2424
         bcm  Burkholderia cenocepacia MC0-3
         bcj  Burkholderia cenocepacia J2315
         bcen  Burkholderia cenocepacia DDS 22E-1
         bcew  Burkholderia cenocepacia DWS 37E-2
         bceo  Burkholderia cenocepacia H111
         bam  Burkholderia ambifaria AMMD
         bac  Burkholderia ambifaria MC40-6
         bmj  Burkholderia multivorans ATCC 17616 (Tohoku)
         bmu  Burkholderia multivorans ATCC 17616 (JGI)
         bmk  Burkholderia multivorans DDS 15A-1
         bmul  Burkholderia multivorans ATCC BAA-247
         bct  Burkholderia cepacia GG4
         bced  Burkholderia cepacia DDS 7H-2
         bcep  Burkholderia cepacia ATCC 25416
         bdl  Burkholderia dolosa
         bpyr  Burkholderia pyrrocinia
         bcon  Burkholderia contaminans
         bub  Burkholderia ubonensis
         bdf  Burkholderia diffusa
         blat  Burkholderia latens
         btei  Burkholderia territorii
         bsem  Burkholderia seminalis
         bpsl  Burkholderia pseudomultivorans
         bmec  Burkholderia metallica
         bstg  Burkholderia stagnalis
         bstl  Burkholderia stabilis
         bgl  Burkholderia glumae BGR1
         bgu  Burkholderia glumae LMG 2196 = ATCC 33617
         bug  Burkholderia sp. CCGE1001
         bgf  Burkholderia sp. CCGE1003
         bgd  Burkholderia gladioli BSR3
         bgo  Burkholderia gladioli ATCC 10248
         byi  Burkholderia sp. YI23
         buk  Burkholderia sp. KJ006
         buo  Burkholderia insecticola
         bue  Burkholderia sp. RPE67
         bul  Burkholderia sp. 2002721687
         buq  Burkholderia sp. HB1
         bgp  Burkholderia plantarii PG1
         bpla  Burkholderia plantarii ATCC 43733
         bud  Burkholderia sp. Bp5365
         bum  Burkholderia sp. PAMC 26561
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       Paraburkholderia (18)
         bxe  Paraburkholderia xenovorans LB400
         bxb  Paraburkholderia xenovorans LB400
         bge  Paraburkholderia sp. CCGE1002
         bpx  Paraburkholderia phenoliruptrix
         bpy  Paraburkholderia phytofirmans
         bfn  Paraburkholderia fungorum
         pspw  Paraburkholderia sprentiae
         parb  Paraburkholderia aromaticivorans
         pgp  Paraburkholderia graminis
         pcj  Paraburkholderia caledonica
         pts  Paraburkholderia terricola
         pcaf  Paraburkholderia caffeinilytica
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       Mycetohabitans (1)
       Polynucleobacter (4)
       Pandoraea (14)
         ppk  Pandoraea pnomenusa 3kgm
         ppno  Pandoraea pnomenusa RB38
         ppnm  Pandoraea pnomenusa DSM 16536
         prb  Pandoraea pnomenusa
         ppul  Pandoraea pulmonicola
         pspu  Pandoraea sputorum
         papi  Pandoraea apista
         pve  Pandoraea vervacti
         pox  Pandoraea oxalativorans
         pfg  Pandoraea faecigallinarum
         pnr  Pandoraea norimbergensis
         pand  Pandoraea sp. XY-2
         pfib  Pandoraea fibrosis
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       Paucimonas (1)
       Ephemeroptericola (1)
       Lautropia (1)
         lmir  Lautropia mirabilis
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       Mycoavidus (1)
         mcys  Mycoavidus cysteinexigens
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       Caballeronia (1)
       Limnobacter (1)
       Bordetella (24)
         bpe  Bordetella pertussis Tohama I
         bpc  Bordetella pertussis CS
         bper  Bordetella pertussis 18323
         bpet  Bordetella pertussis B1917
         bpeu  Bordetella pertussis 137
         bpar  Bordetella parapertussis Bpp5
         bpa  Bordetella parapertussis 12822
         bbh  Bordetella bronchiseptica 253
         bbr  Bordetella bronchiseptica RB50
         bbm  Bordetella bronchiseptica MO149
         bbx  Bordetella bronchiseptica S798
         bpt  Bordetella petrii
         bav  Bordetella avium
         bho  Bordetella holmesii ATCC 51541
         bhm  Bordetella holmesii 44057
         bhz  Bordetella hinzii
         btrm  Bordetella trematum
         bbro  Bordetella bronchialis
         bfz  Bordetella flabilis
         bpdz  Bordetella pseudohinzii
         boh  Bordetella sp. H567
         boz  Bordetella sp. HZ20
         boj  Bordetella sp. J329
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       Achromobacter (9)
         axy  Achromobacter xylosoxidans A8
         axo  Achromobacter xylosoxidans NH44784-1996
         axn  Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
         axx  Achromobacter xylosoxidans NCTC10807
         adt  Achromobacter denitrificans
         ais  Achromobacter insolitus
         asw  Achromobacter spanius
         achr  Achromobacter sp. AONIH1
         achb  Achromobacter sp. B7
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       Taylorella (5)
         teq  Taylorella equigenitalis MCE9
         tea  Taylorella equigenitalis ATCC 35865
         teg  Taylorella equigenitalis 14/56
         tas  Taylorella asinigenitalis MCE3
         tat  Taylorella asinigenitalis 14/45
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       Pusillimonas (3)
         put  Pusillimonas sp. T7-7
         pus  Pusillimonas sp. ye3
         pud  Pusillimonas sp. DMV24BSW_D
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       Advenella (2)
         aka  Advenella kashmirensis
         amim  Advenella mimigardefordensis
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       Castellaniella (1)
       Basilea (1)
         bpsi  Basilea psittacipulmonis
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       Alcaligenes (3)
         afa  Alcaligenes faecalis ZD02
         afq  Alcaligenes faecalis JQ135
         aaqu  Alcaligenes aquatilis
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       Paenalcaligenes (1)
         phn  Paenalcaligenes hominis
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       Orrella (1)
       Oligella (1)
         our  Oligella urethralis
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       Pigmentiphaga (2)
         pig  Pigmentiphaga sp. H8
         pacr  Pigmentiphaga aceris
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       Kerstersia (1)
         kgy  Kerstersia gyiorum
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       Rhodoferax (6)
         rfr  Rhodoferax ferrireducens
         rac  Rhodoferax antarcticus
         rhy  Rhodoferax koreense
         rhf  Rhodoferax sp. CHu59-6-5
         rhg  Rhodoferax sp. Gr-4
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       Polaromonas (5)
         pol  Polaromonas sp. JS666
         pna  Polaromonas naphthalenivorans
         pos  Polaromonas sp. SP1
         poo  Polaromonas sp. Pch-P
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       Acidovorax (11)
       Verminephrobacter (1)
       Delftia (4)
       Variovorax (6)
         vap  Variovorax paradoxus S110
         vpe  Variovorax paradoxus EPS
         vpd  Variovorax paradoxus B4
         vaa  Variovorax sp. PAMC 28711
         vbo  Variovorax boronicumulans
         vam  Variovorax sp. PMC12
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       Comamonas (5)
         cser  Comamonas serinivorans
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       Alicycliphilus (2)
       Ramlibacter (1)
         rta  Ramlibacter tataouinensis
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       Symbiobacter (1)
       Ottowia (2)
         otk  Ottowia oryzae
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       Limnohabitans (2)
       Hydrogenophaga (6)
         hyr  Hydrogenophaga sp. RAC07
         hyb  Hydrogenophaga sp. PBC
         hyl  Hydrogenophaga sp. LPB0072
         hyc  Hydrogenophaga sp. PAMC20947
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       Diaphorobacter (2)
       Simplicispira (1)
       Melaminivora (2)
       Serpentinomonas (2)
         cbab  Serpentinomonas mccroryi
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       Methylibium (2)
         mpt  Methylibium petroleiphilum
         metp  Methylibium sp. Pch-M
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       Herminiimonas (1)
         har  Herminiimonas arsenicoxydans
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       Janthinobacterium (8)
         mms  Janthinobacterium sp. Marseille
         jab  Janthinobacterium sp. B9-8
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       Herbaspirillum (6)
         hse  Herbaspirillum seropedicae SmR1
         hsz  Herbaspirillum seropedicae Z67
         hht  Herbaspirillum hiltneri
         hrb  Herbaspirillum rubrisubalbicans
         hee  Herbaspirillum sp. meg3
         hhf  Herbaspirillum huttiense
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       Zinderia (1)
       Collimonas (3)
         cfu  Collimonas fungivorans
         care  Collimonas arenae
         cpra  Collimonas pratensis
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       Massilia (10)
       Oxalobacter (1)
       Undibacterium (2)
         upv  Undibacterium parvum
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       Noviherbaspirillum (1)
         nok  Noviherbaspirillum sp. UKPF54
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       Duganella (1)
       Sutterella (2)
       Leptothrix (1)
         lch  Leptothrix cholodnii
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       Thiomonas (2)
         tin  Thiomonas intermedia
         thi  Thiomonas arsenitoxydans
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       Rubrivivax (2)
         rge  Rubrivivax gelatinosus
         rbn  Rubrivivax benzoatilyticus
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       Roseateles (1)
         rdp  Roseateles depolymerans
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       Paucibacter (1)
         pkt  Paucibacter sp. KCTC 42545
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       Mitsuaria (1)
         miu  Mitsuaria sp. 7
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       Rhizobacter (1)
         rgu  Rhizobacter gummiphilus
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       Aquabacterium (1)
       Sphaerotilus (1)
       Xylophilus (1)
       Unclassified Burkholderiales (3)
         pbh  Polyangium brachysporum
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       Nitrosomonas (7)
         neu  Nitrosomonas europaea
         net  Nitrosomonas eutropha
         nit  Nitrosomonas sp. AL212
         nii  Nitrosomonas sp. Is79A3
         nco  Nitrosomonas communis
         nur  Nitrosomonas ureae
         nst  Nitrosomonas stercoris
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       Nitrosospira (2)
         nmu  Nitrosospira multiformis
         nlc  Nitrosospira lacus
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       Sulfuritalea (1)
         shd  Sulfuritalea hydrogenivorans
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       Methyloversatilis (1)
       Thiobacillus (1)
         tbd  Thiobacillus denitrificans
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       Methylobacillus (1)
         mfa  Methylobacillus flagellatus
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       Methylotenera (2)
       Methylovorus (2)
         mei  Methylovorus glucosetrophus
         mep  Methylovorus sp. MP688
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       Methylopumilus (2)
       Methylophilus (1)
       Sideroxydans (1)
         slt  Sideroxydans lithotrophicus
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       Gallionella (1)
         gca  Gallionella capsiferriformans
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       Sulfuricella (1)
         sdr  Sulfuricella denitrificans
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       Sulfuriferula (3)
       Ferriphaselus (1)
         fam  Ferriphaselus amnicola
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       Nitrotoga (1)
         nim  Candidatus Nitrotoga sp. AM1P
   2/11
       Aromatoleum (1)
         eba  Aromatoleum aromaticum
   2/11
       Azospira (1)
         dsu  Azospira oryzae
   2/11
       Rugosibacter (1)
         rbu  Rugosibacter aromaticivorans
   2/11
       Oryzomicrobium (1)
         otr  Oryzomicrobium terrae
   2/11
       Unclassified Rhodocyclaceae (1)
         rbh  Rhodocyclaceae bacterium Thauera-like
   2/11
       Dechloromonas (2)
         dar  Dechloromonas aromatica
         dey  Dechloromonas sp. HYN0024
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       Azoarcus (9)
         azo  Azoarcus sp. BH72
         aza  Azoarcus sp. KH32C
         azi  Azoarcus sp. CIB
         aoa  Azoarcus olearius
         atw  Azoarcus sp. SY39
         acom  Azoarcus communis
         azd  Azoarcus sp. DN11
         azr  Azoarcus sp. DD4
         azq  Azoarcus sp. M9-3-2
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       Thauera (5)
         thu  Thauera humireducens
         tcl  Thauera chlorobenzoica
         thk  Thauera sp. K11
         tak  Thauera aromatica
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       Unclassified Zoogloeaceae (1)
         zpa  Zoogloeaceae bacteirum Par-f-2
   2/11
       Ferrovum (1)
         fmy  Ferrovum myxofaciens
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       Accumulibacter (1)
         app  Accumulibacter phosphatis
   2/11
       Tremblaya (3)
       Kinetoplastibacterium (8)
       Profftella (1)
       Nasuia (1)
       Vidania (1)
       Unclassified Betaproteobacteria (3)
         beb  Betaproteobacteria bacterium UKL13-2
         beba  Betaproteobacteria bacterium GR16-43
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     Epsilonproteobacteria (186)
       Helicobacter (76)
       Wolinella (1)
       Sulfurimonas (5)
       Sulfuricurvum (2)
       Campylobacter (67)
         cff  Campylobacter fetus subsp. fetus 82-40
         cft  Campylobacter fetus subsp. fetus 04/554
         cfv  Campylobacter fetus subsp. venerealis cfvi03/293
         cfx  Campylobacter fetus subsp. venerealis 97/608
         cfz  Campylobacter fetus subsp. venerealis 84-112
         camp  Campylobacter fetus subsp. testudinum 03-427
         ccv  Campylobacter curvus
         cha  Campylobacter hominis
         cco  Campylobacter concisus 13826
         ccoc  Campylobacter concisus ATCC 33237
         cla  Campylobacter lari RM2100
         clr  Campylobacter lari RM16701
         clm  Campylobacter lari RM16712
         clq  Campylobacter lari CCUG 22395
         cln  Campylobacter lari NCTC 11845
         cll  Campylobacter lari subsp. concheus LMG 11760
         caj  Campylobacter iguaniorum
         cis  Campylobacter insulaenigrae
         cvo  Campylobacter volucris
         cpel  Campylobacter peloridis
         camr  Campylobacter sp. RM16704
         csm  Campylobacter subantarcticus LMG 24374
         csf  Campylobacter subantarcticus LMG 24377
         cgra  Campylobacter gracilis
         cure  Campylobacter ureolyticus
         chyo  Campylobacter hyointestinalis
         chv  Campylobacter helveticus
         cspf  Campylobacter sputorum
         cpin  Campylobacter pinnipediorum
         ccun  Campylobacter cuniculorum
         clx  Campylobacter lanienae
         cavi  Campylobacter avium
         camz  Campylobacter sp. RM12175
         camy  Campylobacter sp. RM6137
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       Arcobacter (13)
         ahs  Arcobacter halophilus
         amar  Arcobacter marinus
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       Aliiarcobacter (1)
       Halarcobacter (2)
       Pseudoarcobacter (1)
       Unclassified Arcobacter (2)
       Sulfurospirillum (7)
         sdl  Sulfurospirillum deleyianum
         sba  Sulfurospirillum barnesii
         smul  Sulfurospirillum multivorans
         shal  Sulfurospirillum halorespirans
         suls  Sulfurospirillum sp. SL2-1
         sulj  Sulfurospirillum sp. JPD-1
         sult  Sulfurospirillum sp. ACSTCE
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       Hydrogenimonas (1)
       Nitratifractor (1)
       Nitratiruptor (1)
       Sulfurovum (2)
       Nautilia (2)
       Caminibacter (1)
       Cetia (1)
     Deltaproteobacteria (90)
       Geobacter (11)
         gme  Geobacter metallireducens
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       Geoalkalibacter (1)
       Pelobacter (4)
       Desulfuromonas (2)
       Desulfovibrio (18)
         dds  Desulfovibrio desulfuricans ATCC 27774
         dsa  Desulfovibrio salexigens
         dhy  Desulfovibrio hydrothermalis
         dfi  Desulfovibrio fairfieldensis
         def  Desulfovibrio sp. G11
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       Pseudodesulfovibrio (5)
         psel  Pseudodesulfovibrio sp. SRB007
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       Lawsonia (2)
       Desulfomicrobium (2)
       Desulfohalobium (1)
         drt  Desulfohalobium retbaense
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       Desulfotalea (1)
       Desulfurivibrio (1)
       Desulfobulbus (2)
       Desulfocapsa (1)
       Desulfococcus (2)
       Desulfatibacillum (1)
       Desulfobacterium (1)
         dat  Desulfobacterium autotrophicum
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       Desulfobacula (1)
       Desulfosarcina (3)
         dov  Desulfosarcina ovata
         dwd  Desulfosarcina widdelii
         dalk  Desulfosarcina alkanivorans
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       Anaeromyxobacter (4)
         ade  Anaeromyxobacter dehalogenans 2CP-C
         acp  Anaeromyxobacter dehalogenans 2CP-1
         afw  Anaeromyxobacter sp. Fw109-5
         ank  Anaeromyxobacter sp. K
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       Myxococcus (3)
         mxa  Myxococcus xanthus
         msd  Myxococcus stipitatus
         mym  Myxococcus hansupus
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       Corallococcus (3)
         ccx  Corallococcus coralloides
         mfu  Corallococcus macrosporus
         mmas  Myxococcus macrosporus
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       Stigmatella (1)
         sur  Stigmatella aurantiaca
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       Archangium (1)
         age  Archangium gephyra
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       Melittangium (1)
         mbd  Melittangium boletus
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       Cystobacter (1)
         cfus  Cystobacter fuscus
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       Vulgatibacter (1)
         vin  Vulgatibacter incomptus
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       Sorangium (2)
         scl  Sorangium cellulosum So ce56
         scu  Sorangium cellulosum So0157-2
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       Chondromyces (1)
       Sandaracinus (1)
       Labilithrix (1)
       Minicystis (1)
       Haliangium (1)
       Syntrophus (1)
       Desulfobacca (1)
       Desulfomonile (1)
       Syntrophobacter (1)
       Desulfoglaeba (1)
       Desulfarculus (1)
       Hippea (1)
       Desulfurella (1)
       Bradymonas (1)
     Alphaproteobacteria (701)
       Rickettsia (48)
       Orientia (2)
       Phycorickettsia (1)
       Wolbachia (10)
       Anaplasma (10)
       Ehrlichia (14)
       Neorickettsia (4)
         nhm  Neorickettsia helminthoeca
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       Midichloria (1)
       Fokinia (1)
       Unclassified Rickettsiales (2)
         rbt  Rickettsiales bacterium Ac37b
   2/11
       Paracaedibacter (1)
         paca  Candidatus Paracaedibacter acanthamoebae
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       Paracaedimonas (1)
       Nucleicultrix (1)
       Unclassified Holosporaceae (1)
       Mesorhizobium (11)
         mlo  Mesorhizobium japonicum MAFF 303099
         mln  Mesorhizobium loti NZP2037
         mci  Mesorhizobium ciceri (biovar Biserrulae)
         mop  Mesorhizobium opportunistum
         mam  Mesorhizobium australicum
         mamo  Mesorhizobium amorphae
         meso  Mesorhizobium sp. B7
         mesw  Mesorhizobium sp. WSM1497
         mesm  Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2
         mesp  Mesorhizobium sp. Pch-S
         mhua  Mesorhizobium huakuii
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       Chelativorans (1)
         mes  Chelativorans sp. BNC1
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       Hoeflea (1)
         hoe  Hoeflea sp. IMCC20628
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       Aminobacter (2)
         aak  Aminobacter aminovorans
         amih  Aminobacter sp. MSH1
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       Phyllobacterium (1)
         pht  Phyllobacterium zundukense
   3/11
       Roseitalea (1)
         rpod  Roseitalea porphyridii
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       Nitratireductor (1)
         niy  Nitratireductor sp. SY7
   3/11
       Oricola (1)
       Parvibaculum (1)
         pla  Parvibaculum lavamentivorans
   2/11
       Pyruvatibacter (1)
       Unclassified Rhodobiaceae (1)
         rbs  Rhodobiaceae bacterium SMS8
   3/11
       Sinorhizobium (15)
         sme  Sinorhizobium meliloti 1021
         smk  Sinorhizobium meliloti AK83
         smq  Sinorhizobium meliloti BL225C
         smx  Sinorhizobium meliloti SM11
         smi  Sinorhizobium meliloti Rm41
         smeg  Sinorhizobium meliloti GR4
         smel  Sinorhizobium meliloti 2011
         smer  Sinorhizobium meliloti RMO17
         smd  Sinorhizobium medicae
         rhi  Sinorhizobium fredii NGR234
         sfh  Sinorhizobium fredii HH103
         sfd  Sinorhizobium fredii USDA 257
         six  Sinorhizobium sp. RAC02
         same  Sinorhizobium americanum
         sino  Sinorhizobium sp. CCBAU 05631
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       Ensifer (4)
         ead  Ensifer adhaerens OV14
         eah  Ensifer adhaerens Casida A
         esj  Ensifer sojae
         eak  Ensifer alkalisoli
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       Agrobacterium (10)
         atu  Agrobacterium fabrum
         ara  Agrobacterium radiobacter
         atf  Agrobacterium tumefaciens Ach5
         ata  Agrobacterium tumefaciens S33
         avi  Agrobacterium vitis
         agr  Agrobacterium sp. H13-3
         agc  Agrobacterium sp. RAC06
         aro  Agrobacterium rhizogenes
         agt  Agrobacterium sp. 33MFTa1.1
         alf  Agrobacterium larrymoorei
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       Rhizobium (26)
         ret  Rhizobium etli CFN 42
         rec  Rhizobium etli CIAT 652
         rel  Rhizobium etli bv. mimosae Mim1
         rep  Rhizobium etli bv. phaseoli IE4803
         rei  Rhizobium sp. IE4771
         rle  Rhizobium leguminosarum bv. viciae 3841
         rlt  Rhizobium leguminosarum bv. trifolii WSM2304
         rlg  Rhizobium leguminosarum bv. trifolii WSM1325
         rlb  Rhizobium leguminosarum bv. trifolii WSM1689
         rlu  Rhizobium leguminosarum bv. trifolii CB782
         rtr  Rhizobium tropici
         rir  Rhizobium sp. IRBG74
         rhl  Rhizobium favelukesii
         rga  Rhizobium gallicum
         rhn  Rhizobium sp. N1341
         rpha  Rhizobium phaseoli
         rht  Rhizobium sp. NT-26
         rhx  Rhizobium sp. N731
         rhv  Rhizobium sp. S41
         rhk  Rhizobium sp. Kim5
         rez  Rhizobium esperanzae
         rjg  Rhizobium jaguaris
         rhr  Rhizobium sp. 11515TR
         rgr  Rhizobium grahamii
         rad  Rhizobium acidisoli
         rpus  Rhizobium pusense
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       Neorhizobium (4)
         ngl  Neorhizobium galegae bv. officinalis bv. officinalis HAMBI 1141
         ngg  Neorhizobium galegae bv. orientalis HAMBI 540
         neo  Neorhizobium sp. SOG26
         nen  Neorhizobium sp. NCHU2750
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       Liberibacter (7)
       Shinella (1)
         shz  Shinella sp. HZN7
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       Georhizobium (1)
         abaw  Georhizobium profundi
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       Brucella (44)
         bme  Brucella melitensis bv. 1 16M
         bmel  Brucella melitensis bv. 1 16M
         bmi  Brucella melitensis ATCC 23457
         bmz  Brucella melitensis M28
         bmg  Brucella melitensis M5-90
         bmw  Brucella melitensis NI
         bmee  Brucella melitensis bv. 3 Ether
         bmf  Brucella abortus 2308
         bmb  Brucella abortus bv. 1 9-941
         bmc  Brucella abortus S19
         baa  Brucella abortus A13334
         babo  Brucella abortus bv. 2 86/8/59
         babr  Brucella abortus bv. 6 870
         babt  Brucella abortus 63 75
         babb  Brucella abortus BDW
         babu  Brucella abortus bv. 9 C68
         babs  Brucella abortus BER
         babc  Brucella abortus NCTC 10505
         bms  Brucella suis 1330
         bsi  Brucella suis 1330
         bsf  Brucella suis bv. 1
         bsui  Brucella suis bv. 2 Bs143CITA
         bsup  Brucella suis bv. 2 PT09143
         bsuv  Brucella suis bv. 2 PT09172
         bsuc  Brucella suis bv. 2 Bs364CITA
         bmt  Brucella suis ATCC 23445
         bsz  Brucella suis bv. 3
         bsv  Brucella suis VBI22
         bsw  Brucella suis ZW043
         bsg  Brucella suis ZW046
         bov  Brucella ovis
         bcs  Brucella canis ATCC 23365
         bsk  Brucella canis HSK A52141
         bol  Brucella canis Oliveri
         bcar  Brucella canis RM6/66
         bcas  Brucella canis SVA13
         bmr  Brucella microti
         bpp  Brucella pinnipedialis B2/94
         bpv  Brucella pinnipedialis 6/566
         bcet  Brucella ceti TE10759-12
         bcee  Brucella ceti TE28753-12
         bvl  Brucella vulpis
         bru  Brucella sp. 2002734562
         brj  Brucella sp. 09RB8471
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       Ochrobactrum (4)
         oan  Ochrobactrum anthropi ATCC 49188
         oah  Ochrobactrum anthropi OAB
         ops  Ochrobactrum pseudogrignonense
         och  Ochrobactrum sp. A44
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       Bradyrhizobium (18)
         bja  Bradyrhizobium diazoefficiens USDA 110
         bju  Bradyrhizobium japonicum USDA 6
         bjp  Bradyrhizobium japonicum E109
         bra  Bradyrhizobium sp. ORS 278
         bbt  Bradyrhizobium sp. BTAi1
         brs  Bradyrhizobium sp. S23321
         aol  Bradyrhizobium oligotrophicum
         brc  Bradyrhizobium sp. CCGE-LA001
         brad  Bradyrhizobium sp. BF49
         bic  Bradyrhizobium icense
         bro  Bradyrhizobium sp. ORS 285
         brk  Bradyrhizobium sp. SK17
         bot  Bradyrhizobium ottawaense
         brq  Bradyrhizobium amphicarpaeae
         bgq  Bradyrhizobium guangdongense
         bgz  Bradyrhizobium guangzhouense
         bsym  Bradyrhizobium symbiodeficiens
         bbet  Bradyrhizobium betae
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       Rhodopseudomonas (7)
         rpa  Rhodopseudomonas palustris CGA009
         rpb  Rhodopseudomonas palustris HaA2
         rpc  Rhodopseudomonas palustris BisB18
         rpd  Rhodopseudomonas palustris BisB5
         rpe  Rhodopseudomonas palustris BisA53
         rpt  Rhodopseudomonas palustris TIE-1
         rpx  Rhodopseudomonas palustris DX-1
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       Nitrobacter (2)
         nwi  Nitrobacter winogradskyi
         nha  Nitrobacter hamburgensis
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       Oligotropha (3)
         oca  Oligotropha carboxidovorans OM5 (Mississippi)
         ocg  Oligotropha carboxidovorans OM5 (Goettingen)
         oco  Oligotropha carboxidovorans OM4
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       Bosea (5)
         bop  Bosea sp. PAMC 26642
         bos  Bosea sp. RAC05
         bvv  Bosea vaviloviae
         boi  Bosea sp. Tri-49
         bof  Bosea sp. F3-2
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       Variibacter (1)
         vgo  Variibacter gotjawalensis
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       Bartonella (23)
         bapi  Bartonella apis
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       Xanthobacter (1)
         xau  Xanthobacter autotrophicus
   2/11
       Azorhizobium (1)
         azc  Azorhizobium caulinodans
   2/11
       Starkeya (1)
         sno  Starkeya novella
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       Labrys (1)
         lne  Labrys neptuniae
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       Ancylobacter (2)
         anc  Ancylobacter sp. TS-1
         apra  Ancylobacter pratisalsi
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       Methylorubrum (6)
         mea  Methylorubrum extorquens AM1
         mdi  Methylorubrum extorquens DM4
         mex  Methylorubrum extorquens PA1
         mch  Methylorubrum extorquens CM4
         mpo  Methylorubrum populi
         mza  Methylorubrum zatmanii
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       Methylobacterium (14)
         mrd  Methylobacterium radiotolerans
         met  Methylobacterium sp. 4-46
         mno  Methylobacterium nodulans
         mor  Methylobacterium oryzae
         meta  Methylobacterium sp. AMS5
         maqu  Methylobacterium aquaticum
         mphy  Methylobacterium phyllosphaerae
         mee  Methylobacterium currus
         metd  Methylobacterium sp. DM1
         metx  Methylobacterium sp. XJLW
         mets  Methylobacterium durans
         meti  Methylobacterium sp. 17Sr1-43
         mmes  Methylobacterium mesophilicum
         mtea  Methylobacterium terrae
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       Microvirga (3)
         moc  Microvirga ossetica
         miv  Microvirga sp. 17 mud 1-3
         mico  Microvirga sp. HR1
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       Beijerinckia (1)
         bid  Beijerinckia indica
   2/11
       Methylocella (2)
         msl  Methylocella silvestris
         mtun  Methylocella tundrae
   2/11
   2/11
       Methylovirgula (1)
         mlg  Methylovirgula ligni
   2/11
       Unclassified Beijerinckiaceae (1)
         bbar  Beijerinckiaceae bacterium RH AL1
   2/11
       Chelatococcus (2)
         cdq  Chelatococcus daeguensis
   2/11
       Hyphomicrobium (4)
         hdn  Hyphomicrobium denitrificans ATCC 51888
         hdt  Hyphomicrobium denitrificans 1NES1
         hmc  Hyphomicrobium sp. MC1
         hni  Hyphomicrobium nitrativorans
   2/11
   2/11
   2/11
   2/11
       Rhodomicrobium (1)
         rva  Rhodomicrobium vannielii
   2/11
       Pelagibacterium (1)
       Filomicrobium (2)
         fil  Candidatus Filomicrobium marinum W
         fiy  Candidatus Filomicrobium marinum Y
   2/11
   2/11
       Devosia (3)
       Blastochloris (2)
         bvr  Blastochloris viridis
         blag  Blastochloris sp. GI
   2/11
   2/11
       Rhodoplanes (1)
         rhz  Rhodoplanes sp. Z2-YC6860
   2/11
       Maritalea (1)
         mmyr  Maritalea myrionectae
   2/11
       Youhaiella (1)
       Methylocystis (5)
         msc  Methylocystis sp. SC2
         mros  Methylocystis rosea
         mhey  Methylocystis heyeri
         mpar  Methylocystis parvus
   2/11
   2/11
   2/11
   2/11
       Methylosinus (1)
       Pleomorphomonas (1)
         pleo  Pleomorphomonas sp. SM30
   2/11
       Martelella (3)
         mey  Martelella endophytica
         maad  Martelella sp. AD-3
         mmed  Martelella mediterranea
   4/11
   2/11
   2/11
       Aureimonas (1)
         aua  Aureimonas sp. AU20
   2/11
       Breoghania (1)
         brn  Breoghania sp. L-A4
   2/11
       Hodgkinia (4)
       Methyloceanibacter (1)
         mcg  Methyloceanibacter caenitepidi
   2/11
       Tokpelaia (1)
         thd  Candidatus Tokpelaia hoelldoblerii
   2/11
       Pseudorhodoplanes (1)
         psin  Pseudorhodoplanes sinuspersici
   2/11
       Hartmannibacter (1)
         hdi  Hartmannibacter diazotrophicus
   2/11
       Nordella (1)
         noh  Nordella sp. HKS 07
   4/11
       Methyloligella (1)
       Unclassified Rhizobiales (1)
         rbm  Rhizobiales bacterium NRL2
   3/11
       Caulobacter (8)
         ccr  Caulobacter vibrioides CB15
         ccs  Caulobacter vibrioides NA1000
         cak  Caulobacter sp. K31
         cse  Caulobacter segnis
         chq  Caulobacter henricii
         cmb  Caulobacter mirabilis
         cfh  Caulobacter flavus
         cauf  Caulobacter sp. FWC26
   2/11
   2/11
   3/11
   4/11
   2/11
   3/11
   2/11
   3/11
       Phenylobacterium (2)
         pzu  Phenylobacterium zucineum
         phb  Phenylobacterium sp. HYN0004
   3/11
   2/11
       Brevundimonas (10)
         bsb  Brevundimonas subvibrioides
         brd  Brevundimonas sp. DS20
         bne  Brevundimonas naejangsanensis
         brg  Brevundimonas sp. GW460-12-10-14-LB2
         brl  Brevundimonas sp. LM2
         bvc  Brevundimonas vesicularis
         bdm  Brevundimonas diminuta
         brf  Brevundimonas sp. MF30-B
         brev  Brevundimonas sp. SGAir0440
         bmed  Brevundimonas mediterranea
   2/11
   2/11
   2/11
   2/11
   2/11
   2/11
   2/11
   2/11
   2/11
   3/11
       Asticcacaulis (1)
         aex  Asticcacaulis excentricus
   2/11
       Unclassified Caulobacteraceae (1)
         cbot  Caulobacteraceae bacterium
   6/11
       Ruegeria (4)
         sil  Ruegeria pomeroyi
         sit  Ruegeria sp. TM1040
         rua  Ruegeria sp. AD91A
         rut  Ruegeria sp. THAF33
   3/11
   3/11
   3/11
   3/11
       Epibacterium (1)
         rmb  Epibacterium mobile
   3/11
       Rhodobacter (7)
         rsp  Rhodobacter sphaeroides 2.4.1
         rsh  Rhodobacter sphaeroides ATCC 17029
         rsq  Rhodobacter sphaeroides ATCC 17025
         rsk  Rhodobacter sphaeroides KD131
         rcp  Rhodobacter capsulatus
         rhp  Rhodobacter sp. LPB0142
         rbl  Rhodobacter blasticus
   2/11
   3/11
   3/11
   3/11
   3/11
   3/11
   3/11
       Jannaschia (1)
         jan  Jannaschia sp. CCS1
   3/11
       Roseobacter (3)
         rde  Roseobacter denitrificans
         rli  Roseobacter litoralis
         rpon  Roseobacter ponti
   2/11
   3/11
   3/11
       Paracoccus (13)
         pde  Paracoccus denitrificans
         pami  Paracoccus aminophilus
         pye  Paracoccus yeei
         pcon  Paracoccus contaminans
         pzh  Paracoccus zhejiangensis
         paro  Paracoccus sp. BM15
         paru  Paracoccus jeotgali
         pamn  Paracoccus aminovorans
         pmut  Paracoccus mutanolyticus
         pars  Paracoccus sp. SC2-6
         parr  Paracoccus sp. Arc7-R13
         pkd  Paracoccus kondratievae
         ppan  Paracoccus pantotrophus
   2/11
   3/11
   3/11
   3/11
   2/11
   2/11
   3/11
   2/11
   3/11
   3/11
   2/11
   2/11
   2/11
       Dinoroseobacter (1)
         dsh  Dinoroseobacter shibae
   3/11
       Ketogulonicigenium (3)
         kvl  Ketogulonicigenium vulgare WSH-001
         kvu  Ketogulonicigenium vulgare Y25
         kro  Ketogulonicigenium robustum
   2/11
   2/11
   2/11
       Pseudovibrio (1)
         psf  Pseudovibrio sp. FO-BEG1
   3/11
       Phaeobacter (6)
         pga  Phaeobacter inhibens DSM 17395
         pgl  Phaeobacter inhibens 2.10
         pgd  Phaeobacter gallaeciensis DSM 26640
         php  Phaeobacter porticola
         ppic  Phaeobacter piscinae
         phq  Phaeobacter sp. LSS9
   4/11
   4/11
   3/11
   4/11
   3/11
   3/11
       Octadecabacter (4)
         oat  Octadecabacter antarcticus
         oar  Octadecabacter arcticus
         otm  Octadecabacter temperatus
         oct  Octadecabacter sp. SW4
   3/11
   3/11
   3/11
   3/11
       Leisingera (3)
         lmd  Leisingera methylohalidivorans
         lej  Leisingera sp. NJS204
         laqu  Leisingera aquaemixtae
   3/11
   3/11
   4/11
       Roseibacterium (1)
         red  Roseibacterium elongatum
   3/11
       Planktomarina (1)
         ptp  Planktomarina temperata
   3/11
       Celeribacter (4)
         cid  Celeribacter indicus
         cmar  Celeribacter marinus
         ceh  Celeribacter ethanolicus
         cmag  Celeribacter manganoxidans
   2/11
   2/11
   4/11
   2/11
       Marinovum (1)
         malg  Marinovum algicola
   3/11
       Confluentimicrobium (1)
         con  Confluentimicrobium sp. EMB200-NS6
   2/11
       Rhodovulum (3)
         rsu  Rhodovulum sulfidophilum
         rhm  Rhodovulum sp. MB263
         rhc  Rhodovulum sp. P5
   4/11
   3/11
   3/11
       Pannonibacter (1)
         pphr  Pannonibacter phragmitetus
   2/11
       Halocynthiibacter (1)
         hat  Halocynthiibacter arcticus
   3/11
       Labrenzia (5)
         lap  Labrenzia sp. CP4
         lagg  Labrenzia aggregata
         labr  Labrenzia sp. VG12
         labp  Labrenzia sp. PHM005
         labt  Labrenzia sp. THAF35
   3/11
   4/11
   2/11
   3/11
   3/11
       Defluviimonas (1)
         daa  Defluviimonas alba
   3/11
       Yangia (2)
         yan  Yangia sp. CCB-MM3
         ypac  Yangia pacifica
   2/11
   2/11
       Sulfitobacter (6)
         suam  Sulfitobacter sp. AM1-D1
         spse  Sulfitobacter pseudonitzschiae
         sulz  Sulfitobacter sp. SK012
         suli  Sulfitobacter sp. JL08
         suld  Sulfitobacter sp. D7
         sdo  Sulfitobacter donghicola
   3/11
   3/11
   4/11
   3/11
   3/11
   3/11
       Donghicola (1)
         don  Marivivens sp. JLT3646
   3/11
       Salipiger (1)
         tpro  Salipiger profundus
   3/11
       Tateyamaria (1)
         tom  Tateyamaria omphalii
   3/11
       Pelagibaca (1)
         paby  Pelagibaca abyssi
   2/11
       Thioclava (1)
         thw  Thioclava nitratireducens
   2/11
       Roseovarius (5)
         rmm  Roseovarius mucosus
         rok  Roseovarius sp. AK1035
         rid  Roseovarius indicus
         rom  Roseovarius sp. MME-070
         roh  Roseovarius sp. THAF27
   3/11
   3/11
   4/11
   6/11
   2/11
       Yoonia (1)
         lvs  Yoonia vestfoldensis
   3/11
       Antarctobacter (1)
         aht  Antarctobacter heliothermus
   4/11
       Rhodobaca (1)
         rbg  Rhodobaca barguzinensis
   2/11
       Sagittula (1)
         sagu  Sagittula sp. P11
   2/11
       Thalassococcus (1)
         thaa  Thalassococcus sp. S3
   3/11
       Gemmobacter (1)
         geh  Gemmobacter sp. HYN0069
   3/11
       Tabrizicola (1)
         taw  Tabrizicola piscis
   3/11
       Silicimonas (1)
         salo  Silicimonas algicola
   2/11
       Sedimentitalea (1)
         sedi  Sedimentitalea sp. W43
   4/11
       Haematobacter (1)
         hml  Haematobacter massiliensis
   3/11
       Boseongicola (1)
         boo  Boseongicola sp. CCM32
   3/11
       Pseudorhodobacter (1)
         pseb  Pseudorhodobacter sp. S12M18
   3/11
       Litoreibacter (1)
         lit  Litoreibacter sp. LN3S51
   3/11
       Oceanicola (1)
         ocd  Oceanicola sp. D3
   3/11
       Maribius (1)
         maru  Maribius sp. THAF1
   3/11
       Roseivivax (1)
         rot  Roseivivax sp. THAF197b
   2/11
       Paraoceanicella (1)
         ppru  Paraoceanicella profunda
   2/11
       Stappia (1)
         siw  Stappia indica
   3/11
       Fluviibacterium (1)
         faq  Fluviibacterium aquatile
   2/11
       Halovulum (1)
         hdh  Halovulum dunhuangense
   4/11
       Pseudohalocynthiibacter (1)
         paed  Pseudohalocynthiibacter aestuariivivens
   3/11
       Monaibacterium (1)
         mon  Monaibacterium sp. ALG8
   3/11
       Mameliella (1)
         malu  Mameliella alba
   3/11
       Thalassobius (1)
         tgl  Thalassobius gelatinovorus
   4/11
       Unclassified Rhodobacteraceae (2)
         rbz  Rhodobacteraceae bacterium G7
         thas  Rhodobacteraceae bacterium SH-1
   3/11
   3/11
       Maricaulis (1)
         mmr  Maricaulis maris
   2/11
       Hyphomonas (1)
         hne  Hyphomonas neptunium
   4/11
       Hirschia (1)
       Glycocaulis (1)
         gak  Glycocaulis alkaliphilus
   6/11
       Hyphomonadaceae (1)
         hbc  Hyphomonadaceae bacterium UKL13-1
   2/11
       Zymomonas (8)
       Novosphingobium (10)
         npp  Novosphingobium sp. PP1Y
         npn  Novosphingobium pentaromativorans
         nre  Novosphingobium resinovorum
         nov  Novosphingobium sp. P6W
         ntd  Novosphingobium tardaugens
         ngf  Novosphingobium ginsenosidimutans
   3/11
   3/11
   3/11
   3/11
   3/11
   3/11
       Sphingopyxis (12)
         smag  Sphingopyxis macrogoltabida EY-1
         smaz  Sphingopyxis macrogoltabida 203
         sphq  Sphingopyxis sp. QXT-31
         sphx  Sphingopyxis sp. PAMC25046
         sphu  Uncultured Sphingopyxis sp. UC10
   2/11
   2/11
   3/11
   3/11
   3/11
       Sphingomonas (17)
         swi  Sphingomonas wittichii
         sphd  Sphingomonas wittichii DC-6
         sphm  Sphingomonas sp. MM-1
   3/11
   3/11
   3/11
       Sphingobium (15)
         sjp  Sphingobium japonicum
         sch  Sphingobium chlorophenolicum
         syb  Sphingobium sp. YBL2
         sbd  Sphingobium baderi
         spmi  Sphingobium sp. MI1205
         sphb  Sphingobium sp. EP60837
         sphr  Sphingobium sp. RAC03
         sinb  Sphingobium indicum
         spht  Sphingobium sp. TKS
         shyd  Sphingobium hydrophobicum
         sya  Sphingobium yanoikuyae
         sclo  Sphingobium cloacae
         spyg  Sphingobium sp. YG1
         sufl  Sphingobium fuliginis
   3/11
   3/11
   3/11
   5/11
   3/11
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   5/11
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   3/11
       Citromicrobium (1)
       Sphingorhabdus (3)
         sphg  Sphingorhabdus sp. M41
         sfla  Sphingorhabdus sp. SMR4y
         sphy  Sphingorhabdus sp. YGSMI21
   5/11
   3/11
   3/11
       Blastomonas (2)
         blas  Blastomonas sp. RAC04
         bfw  Blastomonas fulva
   7/11
   7/11
       Rhizorhabdus (1)
       Sphingosinicella (2)
         smic  Sphingosinicella microcystinivorans
   3/11
       Tardibacter (1)
         sphj  Tardibacter chloracetimidivorans
   2/11
       Sphingosinithalassobacter (1)
         spzr  Sphingosinithalassobacter sp. zrk23
   5/11
       Hankyongella (1)
       Erythrobacter (8)
         efv  Erythrobacter flavus
         erk  Erythrobacter sp. KY5
   3/11
   3/11
       Altererythrobacter (7)
       Croceicoccus (2)
       Porphyrobacter (4)
       Gluconobacter (5)
         goh  Gluconobacter oxydans H24
         gal  Gluconobacter albidus
         gti  Gluconobacter thailandicus
   2/11
   4/11
   2/11
       Granulobacter (4)
         gbe  Granulibacter bethesdensis CGDNIH1
         gbh  Granulibacter bethesdensis CGDNIH2
         gbc  Granulibacter bethesdensis NIH3.1
         gbs  Granulibacter bethesdensis CGDNIH4
   2/11
   2/11
   2/11
   2/11
       Acidiphilium (2)
         acr  Acidiphilium cryptum
         amv  Acidiphilium multivorum
   2/11
   2/11
       Gluconacetobacter (2)
       Komagataeibacter (6)
         ksc  Komagataeibacter saccharivorans
   2/11
       Acetobacter (19)
         aace  Acetobacter aceti
         aper  Acetobacter persici
         ato  Acetobacter tropicalis
         aot  Acetobacter orientalis
   2/11
   2/11
   2/11
   2/11
       Asaia (1)
       Kozakia (1)
       Roseomonas (3)
         rgi  Roseomonas gilardii
         ros  Roseomonas sp. FDAARGOS_362
         rmuc  Roseomonas mucosa
   2/11
   3/11
   3/11
       Neoasaia (1)
         nch  Neoasaia chiangmaiensis
   2/11
       Commensalibacter (2)
       Stella (2)
         shum  Stella humosa
         svc  Stella vacuolata
   3/11
   3/11
       Neokomagataea (2)
       Swingsia (2)
       Bombella (2)
       Rhodospirillum (3)
         rru  Rhodospirillum rubrum ATCC 11170
         rrf  Rhodospirillum rubrum F11
         rce  Rhodospirillum centenum
   2/11
   2/11
   3/11
       Pararhodospirillum (1)
         rpm  Pararhodospirillum photometricum
   2/11
       Magnetospirillum (5)
         mgy  Magnetospirillum gryphiswaldense MSR-1 v2
         mgry  Magnetospirillum gryphiswaldense MSR-1
   2/11
   2/11
       Azospirillum (10)
         azl  Azospirillum sp. B510
         ali  Azospirillum lipoferum
         abs  Azospirillum brasilense Sp245
         abq  Azospirillum brasilense Az39
         abf  Azospirillum brasilense Sp7
         ati  Azospirillum thiophilum
         azt  Azospirillum sp. TSH58
         azm  Azospirillum sp. M2T2B2
         azz  Azospirillum sp. CFH 70021
   3/11
   3/11
   2/11
   3/11
   3/11
   3/11
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   3/11
       Tistrella (1)
       Endolissoclinum (2)
         thal  Candidatus Endolissoclinum faulkneri L2
         efk  Candidatus Endolissoclinum faulkneri L5
   2/11
   2/11
       Thalassospira (3)
         txi  Thalassospira xiamenensis
         thac  Thalassospira marina
         tii  Thalassospira indica
   3/11
   3/11
   3/11
       Magnetospira (1)
         magq  Magnetospira sp. QH-2
   3/11
       Haematospirillum (1)
       Nitrospirillum (1)
         nao  Nitrospirillum amazonense
   3/11
       Niveispirillum (1)
         ncb  Niveispirillum cyanobacteriorum
   3/11
       Ferrovibrio (1)
         fer  Ferrovibrio terrae
   3/11
       Hypericibacter (2)
         htq  Hypericibacter terrae
         hadh  Hypericibacter adhaerens
   4/11
   4/11
       Parvularcula (1)
         pbr  Parvularcula bermudensis
   2/11
       Magnetococcus (1)
       Pelagibacter (3)
         pel  Candidatus Pelagibacter sp. IMCC9063
   2/11
       Unclassified Pelagibacteraceae (2)
         apc  Alpha proteobacterium HIMB59
   2/11
       Emcibacter (1)
       Micavibrio (2)
         mai  Micavibrio aeruginosavorus ARL-13
         man  Micavibrio aeruginosavorus EPB
   2/11
   2/11
       Polymorphum (1)
         pgv  Polymorphum gilvum
   2/11
       Phreatobacter (2)
         phr  Phreatobacter cathodiphilus
         pstg  Phreatobacter stygius
   2/11
   2/11
       Puniceispirillum (1)
         apb  Candidatus Puniceispirillum marinum
   2/11
     Oligoflexia (12)
       Bdellovibrio (8)
       Halobacteriovorax (2)
       Bacteriovorax (1)
       Unclassified Silvanigrellales (1)
 
 
 
 
     Other proteobacteria (10)
       Acidithiobacillus (7)
       Mariprofundus (2)
         maes  Mariprofundus aestuarium
         mfn  Mariprofundus ferrinatatus
   2/11
   2/11
       Hydrogenophilus (1)
     Firmicutes - Bacilli (815)
       Bacillus (140)
         bsu  Bacillus subtilis subsp. subtilis 168
         bsr  Bacillus subtilis subsp. subtilis RO-NN-1
         bsl  Bacillus subtilis subsp. subtilis BSP1
         bsh  Bacillus subtilis subsp. subtilis 6051-HGW
         bsy  Bacillus subtilis subsp. subtilis BAB-1
         bsut  Bacillus subtilis subsp. subtilis AG1839
         bsul  Bacillus subtilis subsp. subtilis JH642
         bsus  Bacillus subtilis subsp. subtilis OH 131.1
         bss  Bacillus subtilis subsp. spizizenii W23
         bst  Bacillus subtilis subsp. spizizenii TU-B-10
         bso  Bacillus subtilis subsp. natto BEST195
         bsn  Bacillus subtilis BSn5
         bsq  Bacillus subtilis QB928
         bsx  Bacillus subtilis XF-1
         bsp  Bacillus subtilis PY79
         bli  Bacillus licheniformis ATCC 14580
         bld  Bacillus licheniformis DSM 13 = ATCC 14580
         blh  Bacillus paralicheniformis
         bay  Bacillus velezensis FZB42
         baq  Bacillus velezensis CAU B946
         bya  Bacillus velezensis YAU B9601-Y2
         bamp  Bacillus velezensis AS43.3
         baml  Bacillus velezensis UCMB5036
         bama  Bacillus velezensis UCMB5033
         bamn  Bacillus velezensis UCMB5113
         bamb  Bacillus velezensis NAU-B3
         bamt  Bacillus velezensis TrigoCor1448
         bamy  Bacillus velezensis SQR9
         bmp  Bacillus velezensis JS25R
         bao  Bacillus amyloliquefaciens DSM 7
         baz  Bacillus amyloliquefaciens TA208
         bql  Bacillus amyloliquefaciens LL3
         bxh  Bacillus amyloliquefaciens XH7
         bqy  Bacillus amyloliquefaciens Y2
         bami  Bacillus amyloliquefaciens IT-45
         bamc  Bacillus amyloliquefaciens CC178
         bamf  Bacillus amyloliquefaciens LFB112
         bae  Bacillus atrophaeus
         bvm  Bacillus vallismortis
         bson  Bacillus sonorensis
         bht  Bacillus halotolerans
         bha  Bacillus halodurans
         ban  Bacillus anthracis Ames
         bar  Bacillus anthracis Ames Ancestor
         bat  Bacillus anthracis Sterne
         bah  Bacillus anthracis CDC 684
         bai  Bacillus anthracis A0248
         bax  Bacillus anthracis H9401
         bant  Bacillus anthracis A16
         banr  Bacillus anthracis A16R
         bans  Bacillus anthracis SVA11
         banh  Bacillus anthracis HYU01
         banv  Bacillus anthracis Vollum
         bce  Bacillus cereus ATCC 14579
         bca  Bacillus cereus ATCC 10987
         bcz  Bacillus cereus E33L
         bcr  Bacillus cereus AH187
         bcb  Bacillus cereus B4264
         bcu  Bacillus cereus AH820
         bcg  Bacillus cereus G9842
         bcq  Bacillus cereus Q1
         bcx  Bacillus cereus 03BB102
         bal  Bacillus cereus biovar anthracis CI
         bnc  Bacillus cereus NC7401
         bcf  Bacillus cereus F837/76
         bcer  Bacillus cereus FRI-35
         bcef  Bacillus cereus FT9
         bcy  Bacillus cytotoxicus
         btk  Bacillus thuringiensis serovar konkukian 97-27
         btl  Bacillus thuringiensis Al Hakam
         btb  Bacillus thuringiensis BMB171
         btt  Bacillus thuringiensis serovar kurstaki HD73
         bthr  Bacillus thuringiensis serovar kurstaki YBT-1520
         bthi  Bacillus thuringiensis serovar kurstaki HD-1
         btc  Bacillus thuringiensis serovar chinensis CT-43
         btf  Bacillus thuringiensis serovar finitimus YBT-020
         btm  Bacillus thuringiensis MC28
         btg  Bacillus thuringiensis Bt407
         bti  Bacillus thuringiensis HD-771
         btn  Bacillus thuringiensis HD-789
         btht  Bacillus thuringiensis serovar thuringiensis IS5056
         bthu  Bacillus thuringiensis YBT-1518
         btw  Bacillus thuringiensis HD1011
         bthy  Bacillus thuringiensis YWC2-8
         bwe  Bacillus mycoides KBAB4
         bww  Bacillus mycoides WSBC 10204
         bmyo  Bacillus mycoides ATCC 6462
         bty  Bacillus toyonensis
         bmyc  Bacillus pseudomycoides 219298
         bby  Bacillus bombysepticus
         bwd  Bacillus wiedmannii
         bcl  Bacillus clausii
         bpu  Bacillus pumilus SAFR-032
         bpum  Bacillus pumilus MTCC B6033
         bpus  Bacillus pumilus SH-B9
         bpf  Bacillus pseudofirmus
         bmq  Bacillus megaterium QM B1551
         bmd  Bacillus megaterium DSM 319
         bmh  Bacillus megaterium WSH-002
         bmeg  Bacillus megaterium NBRC 15308 = ATCC 14581
         bco  Bacillus cellulosilyticus
         bck  Bacillus coagulans 2-6
         bag  Bacillus coagulans 36D1
         bcoa  Bacillus coagulans DSM 1 = ATCC 7050
         bjs  Bacillus sp. JS
         baci  Bacillus sp. 1NLA3E
         bif  Bacillus infantis
         ble  Bacillus lehensis
         gst  Bacillus sp. X1(2014)
         bacw  Bacillus sp. WP8
         bacp  Bacillus sp. Pc3
         bacb  Bacillus sp. BH072
         baco  Bacillus sp. OxB-1
         bacy  Bacillus sp. YP1
         bacl  Bacillus sp. BS34A
         balm  Bacillus sp. LM 4-2
         beo  Bacillus filamentosus
         bsm  Bacillus smithii
         bsj  Bacillus simplex
         bon  Bacillus oceanisediminis
         bgy  Bacillus glycinifermentans
         bfx  Bacillus flexus
         bgi  Bacillus gibsonii
         bwh  Bacillus weihaiensis
         bxi  Bacillus xiamenensis
         bhk  Bacillus horikoshii
         bkw  Bacillus krulwichiae
         bbev  Bacillus beveridgei
         bko  Bacillus kochii
         balt  Bacillus altitudinis
         bacs  Bacillus sp. SDLI1
         bmur  Bacillus muralis
         bsaf  Bacillus safensis
         bit  Bacillus intestinalis
         bacq  Bacillus sp. Y1
         bthv  Bacillus thermoamylovorans
         bcir  Bacillus circulans
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       Oceanobacillus (3)
         oih  Oceanobacillus iheyensis
         ocn  Oceanobacillus sp. 160
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       Geobacillus (18)
         gka  Geobacillus kaustophilus
         gte  Geobacillus thermoleovorans CCB_US3_UF5
         gtk  Geobacillus thermoleovorans KCTC 3570
         gtm  Geobacillus thermocatenulatus
         gli  Geobacillus lituanicus
         gtn  Geobacillus thermodenitrificans
         gwc  Geobacillus sp. WCH70
         gyc  Geobacillus sp. Y412MC61
         gya  Geobacillus sp. Y412MC52
         gct  Geobacillus sp. C56-T3
         gmc  Geobacillus sp. Y4.1MC1
         ggh  Geobacillus sp. GHH01
         gjf  Geobacillus genomosp. 3
         gea  Geobacillus sp. 12AMOR1
         gse  Geobacillus stearothermophilus
         gsr  Geobacillus subterraneus
         gej  Geobacillus sp. JS12
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       Parageobacillus (3)
         gth  Parageobacillus thermoglucosidasius C56-YS93
         ptl  Parageobacillus thermoglucosidasius DSM 2542
         ptb  Parageobacillus toebii NBRC 107807
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       Anoxybacillus (6)
       Amphibacillus (1)
       Lysinibacillus (8)
         lsp  Lysinibacillus sphaericus
         lgy  Lysinibacillus varians
         lfu  Lysinibacillus fusiformis
         lys  Lysinibacillus sp. YS11
         lyb  Lysinibacillus sp. B2A1
         lyz  Lysinibacillus sp. 2017
         lyg  Lysinibacillus sp. SGAir0095
         lpak  Lysinibacillus pakistanensis
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       Halobacillus (3)
         hhd  Halobacillus halophilus
         hmn  Halobacillus mangrovi
         hli  Halobacillus litoralis
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       Terribacillus (1)
         tap  Terribacillus goriensis
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       Virgibacillus (7)
         vir  Virgibacillus sp. SK37
         vhl  Virgibacillus halodenitrificans
         vig  Virgibacillus sp. 6R
         vil  Virgibacillus phasianinus
         vne  Virgibacillus necropolis
         vpn  Virgibacillus dokdonensis
         vim  Virgibacillus sp. MSP4-1
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       Lentibacillus (1)
         lao  Lentibacillus amyloliquefaciens
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       Fictibacillus (2)
         fpn  Fictibacillus phosphorivorans
         far  Fictibacillus arsenicus
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       Salimicrobium (1)
         sje  Salimicrobium jeotgali
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       Aeribacillus (1)
         apak  Aeribacillus pallidus
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       Aquibacillus (1)
         aqt  Aquibacillus sp. TKL69
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       Psychrobacillus (2)
         psyh  Psychrobacillus sp. AK 1817
         psyo  Psychrobacillus glaciei
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       Pradoshia (1)
         prd  Pradoshia sp. D12
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       Gracilibacillus (1)
         grc  Gracilibacillus sp. SCU50
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       Salicibibacter (2)
         rue  Salicibibacter kimchii
         sale  Salicibibacter halophilus
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       Pontibacillus (1)
         pof  Pontibacillus sp. HMF3514
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       Sporolactobacillus (1)
         stea  Sporolactobacillus terrae
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       Unclassified Sporolactobacillaceae (1)
         bse  Bacillus selenitireducens
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       Staphylococcus (92)
         sau  Staphylococcus aureus subsp. aureus N315 (MRSA/VSSA)
         sav  Staphylococcus aureus subsp. aureus Mu50 (MRSA/VISA)
         saw  Staphylococcus aureus subsp. aureus Mu3 (MRSA/hetero-VISA)
         sah  Staphylococcus aureus subsp. aureus JH1 (MRSA/VSSA)
         saj  Staphylococcus aureus subsp. aureus JH9 (MRSA/VISA)
         sam  Staphylococcus aureus subsp. aureus MW2 (CA-MRSA)
         sas  Staphylococcus aureus subsp. aureus MSSA476 (MSSA)
         sar  Staphylococcus aureus subsp. aureus MRSA252 (MRSA)
         sac  Staphylococcus aureus subsp. aureus COL (MRSA)
         sax  Staphylococcus aureus subsp. aureus USA300_TCH1516 (CA-MRSA)
         saa  Staphylococcus aureus subsp. aureus USA300_FPR3757 (CA-MRSA)
         sao  Staphylococcus aureus subsp. aureus NCTC8325
         sae  Staphylococcus aureus subsp. aureus Newman
         sad  Staphylococcus aureus subsp. aureus ED98
         suu  Staphylococcus aureus subsp. aureus M013 (CA-MRSA)
         suv  Staphylococcus aureus subsp. aureus VC40
         sue  Staphylococcus aureus subsp. aureus ED133
         suj  Staphylococcus aureus subsp. aureus JKD6159 (CA-MRSA)
         suk  Staphylococcus aureus subsp. aureus JKD6008 (MRSA/VISA)
         suc  Staphylococcus aureus subsp. aureus ECT-R 2
         sut  Staphylococcus aureus subsp. aureus T0131 (MRSA)
         suq  Staphylococcus aureus subsp. aureus TCH60
         suz  Staphylococcus aureus subsp. aureus 11819-97 (CA-MRSA)
         sud  Staphylococcus aureus subsp. aureus 71193 (MSSA)
         sux  Staphylococcus aureus subsp. aureus HO 5096 0412 (MRSA)
         suw  Staphylococcus aureus subsp. aureus TW20 (MRSA)
         sug  Staphylococcus aureus subsp. aureus ST398 (MRSA)
         suf  Staphylococcus aureus subsp. aureus LGA251 (MRSA)
         saua  Staphylococcus aureus subsp. aureus 55/2053
         saue  Staphylococcus aureus subsp. aureus 6850 (MSSA)
         saun  Staphylococcus aureus subsp. aureus CN1 (CA-MRSA)
         saus  Staphylococcus aureus subsp. aureus SA40 (CA-MRSA)
         sauu  Staphylococcus aureus subsp. aureus SA957 (CA-MRSA)
         saug  Staphylococcus aureus subsp. aureus SA268 (CA-MRSA)
         sauz  Staphylococcus aureus subsp. aureus Z172 (MRSA/VISA)
         saut  Staphylococcus aureus subsp. aureus ST228/10388 (MRSA)
         sauj  Staphylococcus aureus subsp. aureus ST228/10497 (MRSA)
         sauk  Staphylococcus aureus subsp. aureus ST228/15532 (MRSA)
         sauq  Staphylococcus aureus subsp. aureus ST228/16035 (MRSA)
         sauv  Staphylococcus aureus subsp. aureus ST228/18412 (MRSA)
         sauw  Staphylococcus aureus subsp. aureus ST228/16125 (MRSA)
         saux  Staphylococcus aureus subsp. aureus ST228/18341 (MRSA)
         sauy  Staphylococcus aureus subsp. aureus ST228/18583 (MRSA)
         sauf  Staphylococcus aureus subsp. aureus FDAARGOS_5
         sab  Staphylococcus aureus RF122
         suy  Staphylococcus aureus 04-02981 (MRSA)
         saub  Staphylococcus aureus 08BA02176 (LA-MRSA)
         saum  Staphylococcus aureus M1 (MRSA)
         sauc  Staphylococcus aureus CA-347 (MRSA)
         saur  Staphylococcus aureus Bmb9393 (MRSA)
         saui  Staphylococcus aureus USA300-ISMMS1 (MRSA)
         saud  Staphylococcus aureus 502A
         sams  Staphylococcus aureus MS4
         suh  Staphylococcus argenteus
         ser  Staphylococcus epidermidis RP62A (MRSE)
         sep  Staphylococcus epidermidis ATCC 12228
         sepp  Staphylococcus epidermidis PM221
         seps  Staphylococcus epidermidis SEI
         sha  Staphylococcus haemolyticus JCSC1435
         shh  Staphylococcus haemolyticus Sh29/312/L2
         ssp  Staphylococcus saprophyticus
         sca  Staphylococcus carnosus
         slg  Staphylococcus lugdunensis HKU09-01
         sln  Staphylococcus lugdunensis N920143
         ssd  Staphylococcus pseudintermedius HKU10-03
         sdt  Staphylococcus pseudintermedius ED99
         swa  Staphylococcus warneri
         spas  Staphylococcus pasteuri
         sxy  Staphylococcus xylosus HKUOPL8
         sxl  Staphylococcus xylosus SMQ-121
         sxo  Staphylococcus xylosus C2a
         shu  Staphylococcus hyicus
         scap  Staphylococcus capitis subsp. capitis
         ssch  Staphylococcus schleiferi 1360-13
         sscz  Staphylococcus schleiferi 2317-03
         sagq  Staphylococcus agnetis
         seqo  Staphylococcus equorum
         ssif  Staphylococcus simulans
         scv  Staphylococcus condimenti
         spet  Staphylococcus pettenkoferi
         slz  Staphylococcus lutrae
         sscu  Staphylococcus sciuri
         snl  Staphylococcus nepalensis
         skl  Staphylococcus kloosii
         sfq  Staphylococcus felis
         shom  Staphylococcus hominis
         smus  Staphylococcus muscae
         scar  Staphylococcus caprae
         sff  Staphylococcus fleurettii
         sdp  Staphylococcus delphini
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       Macrococcus (3)
         macr  Macrococcus sp. IME1552
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       Salinicoccus (1)
         shv  Salinicoccus halodurans
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       Auricoccucs (1)
       Listeria (47)
         lmo  Listeria monocytogenes EGD-e (serotype 1/2a)
         lmn  Listeria monocytogenes 08-5578 (serotype 1/2a)
         lmy  Listeria monocytogenes 08-5923 (serotype 1/2a)
         lmt  Listeria monocytogenes 10403S (serotype 1/2a)
         lmoc  Listeria monocytogenes SLCC5850 (serotype 1/2a)
         lmoe  Listeria monocytogenes La111 (serotype 1/2a)
         lmob  Listeria monocytogenes N53-1 (serotype 1/2a)
         lmod  Listeria monocytogenes EGD (serotype 1/2a)
         lmow  Listeria monocytogenes WSLC1001 (serotype 1/2a)
         lmoq  Listeria monocytogenes 6179 (serotype 1/2a)
         lmr  Listeria monocytogenes R479a (serotype 1/2a)
         lmom  Listeria monocytogenes Lm60 (serotype 1/2a)
         lmf  Listeria monocytogenes F2365 (serotype 4b)
         lmc  Listeria monocytogenes CLIP 80459 (serotype 4b)
         lmog  Listeria monocytogenes serotype 4b LL195
         lmp  Listeria monocytogenes 07PF0776 (serotype 4b)
         lmol  Listeria monocytogenes L312 (serotype 4b)
         lmoj  Listeria monocytogenes J1816 (serotype 4b)
         lmoz  Listeria monocytogenes J1-220 (serotype 4b)
         lmox  Listeria monocytogenes WSLC1042 (serotype 4b)
         lmh  Listeria monocytogenes HCC23 (serotype 4a)
         lmq  Listeria monocytogenes M7 (serotype 4a)
         lml  Listeria monocytogenes L99 (serotype 4a)
         lmg  Listeria monocytogenes FSL R2-561
         lms  Listeria monocytogenes Finland 1998
         lmj  Listeria monocytogenes J0161
         lmw  Listeria monocytogenes SLCC2755 (serotype 1/2b)
         lmx  Listeria monocytogenes SLCC2372 (serotype 1/2c)
         lmz  Listeria monocytogenes serotype 7 SLCC2482
         lmon  Listeria monocytogenes SLCC2376 (serotype 4c)
         lmos  Listeria monocytogenes SLCC7179 (serotype 3a)
         lmoo  Listeria monocytogenes SLCC2378 (serotype 4e)
         lmoy  Listeria monocytogenes SLCC2479 (serotype 3c)
         lmot  Listeria monocytogenes SLCC2540 (serotype 3b)
         lmoa  Listeria monocytogenes ATCC 19117 (serotype 4d)
         lmok  Listeria monocytogenes NE dc2014
         lmv  Listeria monocytogenes CFSAN006122
         lin  Listeria innocua (serotype 6a)
         lwe  Listeria welshimeri
         lsg  Listeria seeligeri
         liv  Listeria ivanovii subsp. ivanovii PAM 55
         lii  Listeria ivanovii subsp. ivanovii WSLC 3010
         liw  Listeria ivanovii WSLC3009
         lia  Listeria ivanovii subsp. londoniensis WSLC 30167
         lio  Listeria ivanovii subsp. londoniensis WSLC 30151
         lwi  Listeria weihenstephanensis
         lgz  Listeria grayi
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       Brochothrix (1)
         bths  Brochothrix thermosphacta
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       Exiguobacterium (5)
       Gemella (5)
       Brevibacillus (5)
         bbe  Brevibacillus brevis
         blr  Brevibacillus laterosporus
         bfm  Brevibacillus formosus
         bagr  Brevibacillus agri
         brw  Brevibacillus sp. 7WMA2
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       Paenibacillus (48)
         pms  Paenibacillus mucilaginosus KNP414
         pmq  Paenibacillus mucilaginosus 3016
         pmw  Paenibacillus mucilaginosus K02
         plv  Paenibacillus larvae
         pbj  Paenibacillus beijingensis
         pnp  Paenibacillus naphthalenovorans
         pbv  Paenibacillus bovis
         pkb  Paenibacillus kribbensis
         ppsc  Paenibacillus psychroresistens
         pchi  Paenibacillus chitinolyticus
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       Thermobacillus (1)
       Aneurinibacillus (2)
       Cohnella (2)
         coh  Cohnella candidum
         cohn  Cohnella sp. HS21
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       Saccharibacillus (1)
       Alicyclobacillus (2)
         aac  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
         aad  Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1
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       Kyrpidia (2)
       Tumebacillus (2)
         tum  Tumebacillus avium
         tab  Tumebacillus algifaecis
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       Solibacillus (3)
         siv  Solibacillus silvestris StLB046
         ssil  Solibacillus silvestris DSM 12223
         sob  Solibacillus sp. R5-41
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       Planococcus (11)
         pln  Planococcus sp. PAMC 21323
         pku  Planococcus kocurii
         prt  Planococcus rifietoensis
         pll  Planococcus versutus
         pana  Planococcus antarcticus
         pdg  Planococcus donghaensis
         phc  Planococcus halocryophilus
         pmar  Planococcus sp. Y42
         ppla  Planococcus plakortidis
         pfae  Planococcus faecalis
         plx  Planococcus sp. MB-3u-03
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       Jeotgalibacillus (1)
         jeo  Jeotgalibacillus malaysiensis
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       Kurthia (2)
         kur  Kurthia sp. 11kri321
         kzo  Kurthia zopfii
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       Sporosarcina (6)
         spsy  Sporosarcina psychrophila
         spor  Sporosarcina sp. P33
         spop  Sporosarcina sp. P37
         sure  Sporosarcina ureae
         spos  Sporosarcina sp. PTS2304
         spae  Sporosarcina pasteurii
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       Rummeliibacillus (1)
       Paenisporosarcina (2)
         paek  Paenisporosarcina sp. K2R23-3
         panc  Paenisporosarcina antarctica
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       Planomicrobium (2)
         play  Planomicrobium sp. Y50
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       Novibacillus (1)
         ntr  Novibacillus thermophilus
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       Laceyella (1)
         lfb  Laceyella sacchari
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       Thermoactinomyces (1)
         tvu  Thermoactinomyces vulgaris
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       Kroppenstedtia (2)
         kpul  Kroppenstedtia pulmonis
         keb  Kroppenstedtia eburnea
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       Lactococcus (19)
         lrn  Lactococcus raffinolactis
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       Streptococcus (148)
         smu  Streptococcus mutans UA159 (serotype c)
         smc  Streptococcus mutans NN2025 (serotype c)
         smut  Streptococcus mutans GS-5 (serotype c)
         smj  Streptococcus mutans LJ23 (serotype k)
         smua  Streptococcus mutans UA159-FR
         ssa  Streptococcus sanguinis
         sgo  Streptococcus gordonii
         ssr  Streptococcus salivarius CCHSS3
         spat  Streptococcus pantholopis
         srat  Streptococcus ratti
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       Lactobacillus (101)
         lsl  Lactobacillus salivarius UCC118
         lsi  Lactobacillus salivarius CECT 5713
         lsj  Lactobacillus salivarius JCM1046
         lcl  Lactobacillus paracasei LOCK919
         lgn  Lactobacillus ginsenosidimutans
         lhi  Lactobacillus heilongjiangensis
         lagl  Lactobacillus agilis
         lalw  Lactobacillus allii
         lali  Lactobacillus alimentarius
         lng  Lactobacillus nagelii
         ldx  Lactobacillus dextrinicus
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   2/11
       Pediococcus (6)
       Enterococcus (23)
         ecas  Enterococcus casseliflavus
         emu  Enterococcus mundtii
         edu  Enterococcus durans
         ega  Enterococcus gallinarum
         ess  Enterococcus silesiacus
         egv  Enterococcus gilvus
         eav  Enterococcus avium
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   6/11
       Melissococcus (2)
       Tetragenococcus (4)
       Vagococcus (5)
         vpi  Vagococcus penaei
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       Oenococcus (3)
       Leuconostoc (13)
       Weissella (11)
         wcb  Weissella cibaria
         wcf  Weissella confusa
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       Aerococcus (7)
       Abiotrophia (1)
       Unclassified Aerococcaceae (1)
       Carnobacterium (6)
         crn  Carnobacterium sp. 17-4
         cml  Carnobacterium maltaromaticum
         caw  Carnobacterium inhibens
         carc  Carnobacterium sp. CP1
         cdj  Carnobacterium divergens
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       Marinilactibacillus (1)
         marr  Marinilactibacillus sp. 15R
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       Jeotgalibaca (5)
       Dolosigranulum (1)
     Firmicutes - Clostridia (231)
       Clostridium (54)
         cac  Clostridium acetobutylicum ATCC 824
         cae  Clostridium acetobutylicum DSM 1731
         cay  Clostridium acetobutylicum EA 2018
         cno  Clostridium novyi
         cbe  Clostridium beijerinckii NCIMB 8052
         cbz  Clostridium beijerinckii ATCC 35702
         cbei  Clostridium beijerinckii NCIMB 14988
         csr  Clostridium saccharoperbutylacetonicum
         cpas  Clostridium pasteurianum BC1
         csb  Clostridium saccharobutylicum
         csq  Clostridium scatologenes
         cace  Clostridium aceticum
         cbut  Clostridium butyricum
         ctyk  Clostridium tyrobutyricum
         ceu  Clostridium estertheticum
         cfm  Clostridium formicaceticum
         carg  Clostridium argentinense
         cdrk  Clostridium drakei
         cdy  Clostridium diolis
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       Alkaliphilus (2)
         amt  Alkaliphilus metalliredigens
         aoe  Alkaliphilus oremlandii
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       Arthromitus (4)
       Geosporobacter (1)
         gfe  Geosporobacter ferrireducens
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       Hathewaya (1)
       Caloramator (1)
         cale  Caloramator sp. E03
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       Crassaminicella (1)
         crs  Crassaminicella sp. SY095
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       Caloranaerobacter (1)
         cazo  Caloranaerobacter azorensis
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       Mageeibacillus (1)
       Fastidiosipila (1)
         fsa  Fastidiosipila sanguinis
   2/11
       Hungateiclostridium (4)
       Unclassified Hungateiclostridiaceae (1)
         ruk  Hungateiclostridiaceae bacterium KB18
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       Ruminiclostridium (1)
       Thermoclostridium (2)
       Pseudoclostridium (1)
       Unclassified Ruminococcaceae (4)
       Flavonifractor (1)
         fpla  Flavonifractor plautii
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       Ethanoligenens (1)
       Ruminococcus (5)
       Faecalibacterium (2)
       Caproiciproducens (1)
         capr  Caproiciproducens sp. NJN-50
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       Butyrivibrio (3)
       Cellulosilyticum (2)
       Roseburia (3)
       Coprococcus (2)
       Blautia (6)
       Lachnoclostridium (3)
         lacy  Lachnoclostridium sp. YL32
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       Lacrimispora (2)
         csh  Clostridium saccharolyticum WM1
         cso  Clostridium cf. saccharolyticum K10
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       Anaerostipes (2)
       Herbinix (1)
       Anaerotignum (1)
       Lachnoanaerobaculum (1)
       Anaerobutyricum (1)
       Pseudobutyrivibrio (1)
       Anaerocolumna (1)
         anr  Anaerocolumna sp. CBA3638
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       Lachnospira (1)
       Mediterraneibacter (1)
       Enterocloster (1)
         cbol  Enterocloster bolteae
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       Unclassified Lachnospiraceae (4)
         lbw  Lachnospiraceae bacterium oral taxon 500
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       Clostridioides (5)
         cdf  Clostridioides difficile 630
         pdc  Clostridioides difficile 630
         cdc  Clostridioides difficile CD196
         cdl  Clostridioides difficile R20291
         pdf  Clostridioides difficile 630Derm
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       Peptoclostridium (1)
       Acetoanaerobium (1)
         cst  Acetoanaerobium sticklandii
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       Filifactor (1)
         faa  Filifactor alocis
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       Paeniclostridium (1)
       Romboutsia (1)
       Peptacetobacter (1)
       Unclassified Peptostreptococcaceae (1)
       Symbiobacterium (1)
         sth  Symbiobacterium thermophilum
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       Syntrophomonas (1)
       Syntrophothermus (1)
       Syntrophocurvum (1)
       Desulfitobacterium (5)
         dsy  Desulfitobacterium hafniense Y51
         dhd  Desulfitobacterium hafniense DCB-2
         ddh  Desulfitobacterium dehalogenans
         ddl  Desulfitobacterium dichloroeliminans
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       Desulfotomaculum (4)
       Desulfofarcimen (1)
       Desulfofundulus (1)
       Desulfallas (1)
       Pelotomaculum (1)
       Desulforudis (1)
       Thermincola (1)
       Syntrophobotulus (1)
       Desulfosporosinus (3)
         dai  Desulfosporosinus acidiphilus
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       Dehalobacter (3)
       Heliobacterium (1)
       Heliorestis (1)
       Eubacterium (3)
         elm  Eubacterium callanderi
         emt  Eubacterium maltosivorans
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       Acetobacterium (1)
         awo  Acetobacterium woodii
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       Oscillibacter (1)
       Dysosmobacter (1)
       Thermaerobacter (3)
         tmr  Thermaerobacter marianensis
         thef  Thermaerobacter sp. FW80
         thep  Thermaerobacter sp. PB12/4term
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       Sulfobacillus (3)
         say  Sulfobacillus acidophilus TPY
         sap  Sulfobacillus acidophilus DSM 10332
         sthr  Sulfobacillus thermotolerans
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       Carboxydocella (1)
       Christensenella (1)
         cmiu  Christensenella minuta
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       Intestinimonas (1)
       Mogibacterium (1)
       Aminipila (3)
         amij  Aminipila sp. JN-39
         amic  Aminipila sp. CBA3637
         abut  Aminipila butyrica
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       Unclassified Clostridiales (4)
         euu  Eubacterium sulci
         bprm  Butyrate-producing bacterium SM4/1
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       Caldanaerobacter (1)
         tte  Caldanaerobacter subterraneus subsp. tengcongensis
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       Thermoanaerobacter (8)
         tex  Thermoanaerobacter sp. X514
         thx  Thermoanaerobacter sp. X513
         tpd  Thermoanaerobacter pseudethanolicus
         tbo  Thermoanaerobacter brockii
         twi  Thermoanaerobacter wiegelii
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       Carboxydothermus (1)
       Tepidanaerobacter (2)
         tep  Tepidanaerobacter acetatoxydans Re1
         tae  Tepidanaerobacter acetatoxydans Re1
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       Moorella (3)
       Ammonifex (1)
       Thermacetogenium (1)
       Caldicellulosiruptor (9)
       Thermosediminibacter (1)
         toc  Thermosediminibacter oceani
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       Thermoanaerobacterium (4)
       Thermodesulfobium (2)
       Mahella (1)
       Natranaerobius (1)
         nth  Natranaerobius thermophilus
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       Halothermothrix (1)
         hor  Halothermothrix orenii
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       Halanaerobium (2)
       Halocella (1)
       Acetohalobium (1)
       Halobacteroides (1)
         hhl  Halobacteroides halobius
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       Anoxybacter (1)
         aft  Anoxybacter fermentans
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     Firmicutes - Others (46)
       Finegoldia (1)
       Anaerococcus (1)
       Parvimonas (1)
       Peptoniphilus (3)
       Gottschalkia (1)
       Sporanaerobacter (1)
         spoa  Sporanaerobacter sp. NJN-17
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       Veillonella (4)
         vpr  Veillonella parvula
         vat  Veillonella atypica
         vrm  Veillonella rodentium
         vdn  Veillonella dispar
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       Megasphaera (3)
       Dialister (2)
         dho  Dialister hominis
   2/11
       Selenomonas (5)
         ssg  Selenomonas sputigena
   2/11
       Megamonas (2)
         mhg  Megamonas hypermegale
         mfun  Megamonas funiformis
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       Pelosinus (2)
         puf  Pelosinus sp. UFO1
         pft  Pelosinus fermentans
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       Methylomusa (1)
       Sporomusa (1)
         sted  Sporomusa termitida
   3/11
       Acidaminococcus (2)
       Phascolarctobacterium (1)
         pfac  Phascolarctobacterium faecium
   2/11
       Erysipelothrix (5)
         erh  Erysipelothrix rhusiopathiae Fujisawa
         ers  Erysipelothrix rhusiopathiae SY1027
         erl  Erysipelothrix larvae
         eri  Erysipelothrix sp. 15TAL0474
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       Faecalitalea (1)
       Turicibacter (2)
       Faecalibaculum (1)
       Absiella (2)
       Erysipelatoclostridium (1)
         ciu  Clostridium innocuum
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       Unclassified Erysipelotrichaceae (2)
         erb  Erysipelotrichaceae bacterium I46
         ebm  Erysipelotrichaceae bacterium SG0102
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       Limnochorda (1)
         lpil  Limnochorda pilosa
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     Tenericutes (157)
       Mycoplasma (97)
       Ureaplasma (4)
       Hepatoplasma (1)
       Phytoplasma (8)
       Acholeplasma (6)
       Mesoplasma (8)
       Entomoplasma (4)
       Spiroplasma (26)
       Izimaplasma (1)
         mbj  Candidatus Izimaplasma sp. HR1
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       Unclassified Tenericutes (2)
         tbm  Tenericutes bacterium MO-XQ
         tbz  Tenericutes bacterium MZ-XQ
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     Actinobacteria (749)
       Mycobacterium (73)
         mtu  Mycobacterium tuberculosis H37Rv
         mtv  Mycobacterium tuberculosis H37Rv
         mtc  Mycobacterium tuberculosis CDC1551
         mra  Mycobacterium tuberculosis H37Ra
         mtf  Mycobacterium tuberculosis F11
         mtb  Mycobacterium tuberculosis KZN 1435
         mtk  Mycobacterium tuberculosis KZN 4207
         mtz  Mycobacterium tuberculosis KZN 605
         mtg  Mycobacterium tuberculosis RGTB327
         mti  Mycobacterium tuberculosis RGTB423
         mte  Mycobacterium tuberculosis CCDC5079
         mtur  Mycobacterium tuberculosis CCDC5079
         mtl  Mycobacterium tuberculosis CCDC5180
         mto  Mycobacterium tuberculosis CTRI-2
         mtd  Mycobacterium tuberculosis UT205
         mtn  Mycobacterium tuberculosis Erdman = ATCC 35801
         mtj  Mycobacterium tuberculosis Beijing/NITR203
         mtub  Mycobacterium tuberculosis 7199-99
         mtuc  Mycobacterium tuberculosis CAS/NITR204
         mtue  Mycobacterium tuberculosis EAI5/NITR206
         mtx  Mycobacterium tuberculosis EAI5
         mtuh  Mycobacterium tuberculosis Haarlem/NITR202
         mtul  Mycobacterium tuberculosis Haarlem
         mtut  Mycobacterium tuberculosis BT1
         mtuu  Mycobacterium tuberculosis BT2
         mtq  Mycobacterium tuberculosis HKBS1
         mbo  Mycobacterium tuberculosis variant bovis AF2122/97
         mbb  Mycobacterium tuberculosis variant bovis BCG Pasteur 1173P2
         mbt  Mycobacterium tuberculosis variant bovis BCG Tokyo 172
         mbm  Mycobacterium tuberculosis variant bovis BCG Mexico
         mbk  Mycobacterium tuberculosis variant bovis BCG Korea 1168P
         mbx  Mycobacterium tuberculosis variant bovis BCG ATCC 35743
         maf  Mycobacterium tuberculosis variant africanum
         mmic  Mycobacterium tuberculosis variant microti
         mce  Mycobacterium canettii CIPT 140010059
         mcq  Mycobacterium canettii CIPT 140060008
         mcv  Mycobacterium canettii CIPT 140070008
         mcx  Mycobacterium canettii CIPT 140070010
         mcz  Mycobacterium canettii CIPT 140070017
         mle  Mycobacterium leprae TN
         mlb  Mycobacterium leprae Br4923
         mpa  Mycobacterium avium subsp. paratuberculosis K-10
         mao  Mycobacterium avium subsp. paratuberculosis MAP4
         mavi  Mycobacterium avium subsp. paratuberculosis E1
         mavu  Mycobacterium avium subsp. paratuberculosis E93
         mav  Mycobacterium avium 104
         mit  Mycobacterium intracellulare MOTT-02
         mia  Mycobacterium intracellulare ATCC 13950
         mid  Mycobacterium intracellulare subsp. intracellulare
         myo  Mycobacterium intracellulare subsp. yongonense
         mir  Mycobacterium paraintracellulare
         mchi  Mycobacterium chimaera
         mmal  Mycobacterium marseillense
         mlp  Mycobacterium lepraemurium
         msa  Mycobacterium sp. JS623
         mul  Mycobacterium ulcerans
         mmc  Mycobacterium sp. MCS
         mkm  Mycobacterium sp. KMS
         mjl  Mycobacterium sp. JLS
         mmi  Mycobacterium marinum M
         mmae  Mycobacterium marinum E11
         mmm  Mycobacterium sp. MOTT36Y
         mli  Mycobacterium liflandii
         mkn  Mycobacterium kansasii ATCC 12478
         myv  Mycobacterium sp. VKM Ac-1817D
         mye  Mycobacterium sp. EPa45
         mhad  Mycobacterium haemophilum
         myn  Mycobacterium sp. NRRL B-3805
         mdx  Mycobacterium dioxanotrophicus
         mshg  Mycobacterium shigaense
         mfj  Mycobacterium florentinum
         mgro  Mycobacterium grossiae
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       Mycolicibacterium (21)
         msm  Mycolicibacterium smegmatis MC2 155
         msg  Mycolicibacterium smegmatis MC2 155
         msb  Mycolicibacterium smegmatis MC2 155
         msn  Mycolicibacterium smegmatis INHR1
         msh  Mycolicibacterium smegmatis INHR2
         mva  Mycolicibacterium vanbaalenii
         mgi  Mycolicibacterium gilvum PYR-GCK
         msp  Mycolicibacterium gilvum Spyr1
         mcb  Mycolicibacterium chubuense
         mne  Mycolicibacterium neoaurum
         mgo  Mycolicibacterium goodii
         mft  Mycolicibacterium fortuitum
         mphl  Mycolicibacterium phlei
         mvq  Mycolicibacterium vaccae
         mll  Mycolicibacterium litorale
         mrh  Mycolicibacterium rhodesiae
         mthn  Mycolicibacterium thermoresistibile
         mhas  Mycolicibacterium hassiacum
         mdu  Mycolicibacterium duvalii
         mcht  Mycolicibacterium chitae
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       Mycobacteroides (9)
         mab  Mycobacteroides abscessus ATCC 19977
         mmv  Mycobacteroides abscessus subsp. massiliense GO 06
         mabb  Mycobacteroides abscessus subsp. bolletii 50594
         mabl  Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300
         mche  Mycobacteroides chelonae
         miz  Mycobacteroides immunogenum
         mste  Mycobacterium stephanolepidis
         msao  Mycobacteroides saopaulense
         msal  Mycobacteroides salmoniphilum
   2/11
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       Mycolicibacter (3)
         mjd  Mycolicibacter sinensis
         mter  Mycolicibacter terrae
   2/11
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       Hoyosella (1)
       Mycolicibacillus (1)
         mkr  Mycolicibacillus koreensis
   2/11
       Corynebacterium (100)
         cva  Corynebacterium variabile
         cter  Corynebacterium terpenotabidum
         cgy  Corynebacterium glyciniphilum
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       Nocardia (10)
         nfa  Nocardia farcinica IFM 10152
         nfr  Nocardia farcinica NCTC11134
         ncy  Nocardia cyriacigeorgica
         nbr  Nocardia brasiliensis
         nno  Nocardia nova
         nsl  Nocardia mangyaensis
         nsr  Nocardia seriolae
         ntp  Nocardia terpenica
         noz  Nocardia sp. CS682
         nod  Nocardia otitidiscaviarum
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       Rhodococcus (20)
         rha  Rhodococcus jostii
         rer  Rhodococcus erythropolis PR4
         rey  Rhodococcus erythropolis CCM2595
         reb  Rhodococcus erythropolis BG43
         rop  Rhodococcus opacus B4
         roa  Rhodococcus opacus PD630
         req  Rhodococcus hoagii
         rqi  Rhodococcus qingshengii
         rhod  Rhodococcus sp. 008
         rrt  Rhodococcus rhodochrous
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       Gordonia (11)
         gbr  Gordonia bronchialis
         gpo  Gordonia polyisoprenivorans
         gor  Gordonia sp. KTR9
         gta  Gordonia terrae
         goc  Gordonia sp. YC-JH1
         git  Gordonia iterans
         gru  Gordonia rubripertincta
         gom  Gordonia insulae
         gav  Gordonia alkanivorans
         god  Gordonia sp. 135
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       Tsukamurella (2)
         tpr  Tsukamurella paurometabola
         tsm  Tsukamurella tyrosinosolvens
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       Segniliparus (1)
       Dietzia (5)
         dtm  Dietzia timorensis
         dit  Dietzia sp. oral taxon 368
         diz  Dietzia sp. JS16-p6b
         dpc  Dietzia psychralcaliphila
         dlu  Dietzia lutea
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       Lawsonella (1)
       Tomitella (1)
         toy  Tomitella sp. HY188
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       Streptomyces (70)
         sco  Streptomyces coelicolor
         salb  Streptomyces albidoflavus
         sma  Streptomyces avermitilis
         sgr  Streptomyces griseus
         sgb  Streptomyces globisporus
         scb  Streptomyces scabiei
         ssx  Streptomyces sp. SirexAA-E
         sct  Streptomyces cattleya NRRL 8057 = DSM 46488
         scy  Streptomyces cattleya NRRL 8057 = DSM 46488
         sfa  Streptomyces pratensis
         sbh  Streptomyces bingchenggensis
         shy  Streptomyces hygroscopicus subsp. jinggangensis 5008
         sho  Streptomyces hygroscopicus subsp. jinggangensis TL01
         sve  Streptomyces venezuelae
         sdv  Streptomyces davaonensis
         sals  Streptomyces albus DSM 41398
         strp  Streptomyces sp. PAMC 26508
         sfi  Streptomyces fulvissimus
         sci  Streptomyces collinus
         src  Streptomyces rapamycinicus
         salu  Streptomyces albulus NK660
         sall  Streptomyces albulus ZPM
         slv  Streptomyces lividans
         sgu  Streptomyces glaucescens
         svt  Streptomyces vietnamensis
         stre  Streptomyces sp. 769
         scw  Streptomyces cyaneogriseus
         sxi  Streptomyces xiamenensis
         strm  Streptomyces sp. Mg1
         strc  Streptomyces sp. CNQ-509
         samb  Streptomyces ambofaciens
         spri  Streptomyces pristinaespiralis
         scz  Streptomyces sp. CFMR 7
         scx  Streptomyces sp. CdTB01
         srw  Streptomyces reticuli
         strf  Streptomyces sp. 4F
         sle  Streptomyces leeuwenhoekii
         spav  Streptomyces parvulus
         strt  Streptomyces sp. SAT1
         sclf  Streptomyces clavuligerus
         sgs  Streptomyces griseochromogenes
         stsi  Streptomyces qaidamensis
         sls  Streptomyces lincolnensis
         snr  Streptomyces noursei
         strd  Streptomyces sp. CCM_MD2014
         snw  Streptomyces niveus
         ssia  Streptomyces alfalfae
         svu  Streptomyces violaceoruber
         spun  Streptomyces fodineus
         slau  Streptomyces laurentii
         salf  Streptomyces alboflavus
         slx  Streptomyces lavendulae
         stro  Streptomyces sp. MOE7
         sfk  Streptomyces formicae
         snz  Streptomyces nigra
         srj  Streptomyces rochei
         slk  Streptomyces lunaelactis
         sky  Streptomyces koyangensis
         sdx  Streptomyces dengpaensis
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       Kitasatospora (4)
         kab  Kitasatospora albolonga
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       Streptacidiphilus (1)
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       Microbacterium (17)
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         agy  Agromyces aureus
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       Cryobacterium (2)
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       Aurantimicrobium (3)
         aum  Aurantimicrobium sp. MWH-Mo1
   2/11
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       Arthrobacter (18)
         arl  Arthrobacter sp. LS16
         ary  Arthrobacter sp. YC-RL1
         acit  Arthrobacter citreus
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       Psychromicrobium (1)
       Paenarthrobacter (1)
       Pseudarthrobacter (5)
         psul  Pseudarthrobacter sulfonivorans
   3/11
       Glutamicibacter (4)
         aai  Glutamicibacter arilaitensis
         gar  Glutamicibacter halophytocola
         glu  Glutamicibacter sp. ZJUTW
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       Renibacterium (1)
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         iva  Isoptericola variabilis
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       Cellulosimicrobium (2)
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       Cellulomonas (7)
       Oerskovia (1)
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       Intrasporangium (1)
       Arsenicicoccus (1)
         ars  Arsenicicoccus sp. oral taxon 190
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       Serinicoccus (2)
         serj  Serinicoccus sp. JLT9
   2/11
       Janibacter (3)
         jte  Janibacter indicus
         jme  Janibacter melonis
   2/11
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       Ornithinimicrobium (2)
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         phw  Phycicoccus sp. HDW14
   2/11
       Brevibacterium (4)
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       Cutibacterium (14)
         pac  Cutibacterium acnes KPA171202
         pak  Cutibacterium acnes SK137
         pav  Cutibacterium acnes TypeIA2 P.acn17
         pax  Cutibacterium acnes TypeIA2 P.acn31
         paz  Cutibacterium acnes TypeIA2 P.acn33
         paw  Cutibacterium acnes 266
         pad  Cutibacterium acnes subsp. defendens ATCC 11828
         pcn  Cutibacterium acnes 6609
         pacc  Cutibacterium acnes C1
         pach  Cutibacterium acnes HL096PA1
         pacn  Cutibacterium acnes hdn-1
         cacn  Cutibacterium acnes KCOM 1861 (= ChDC B594)
         cgrn  Cutibacterium granulosum
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       Propionibacterium (5)
         prl  Propionibacterium sp. oral taxon 193
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       Pseudopropionibacterium (1)
         ppc  Pseudopropionibacterium propionicum
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       Acidipropionibacterium (4)
       Microlunatus (3)
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       Nocardioides (8)
         nca  Nocardioides sp. JS614
         noy  Nocardioides euryhalodurans
         noo  Nocardioides sp. S-1144
   5/11
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       Kribbella (1)
         kfl  Kribbella flavida
   2/11
       Pimelobacter (1)
         psim  Pimelobacter simplex
   2/11
       Aeromicrobium (4)
         aeb  Aeromicrobium sp. A1-2
   2/11
       Micropruina (1)
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       Nocardiopsis (3)
         ngv  Nocardiopsis gilva
   2/11
       Streptomonospora (1)
       Thermomonospora (1)
         tcu  Thermomonospora curvata
   2/11
       Actinomadura (1)
         actw  Actinomadura sp. WMMB499
   2/11
       Streptosporangium (1)
         sro  Streptosporangium roseum
   2/11
       Nonomuraea (2)
         noa  Nonomuraea sp. ATCC 55076
         now  Nonomuraea sp. WYY166
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       Frankia (5)
         fre  Frankia sp. EAN1pec
         fri  Frankia inefficax
         fal  Frankia alni
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       Acidothermus (1)
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         gob  Geodermatophilus obscurus
   2/11
       Blastococcus (1)
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       Saccharopolyspora (3)
         sen  Saccharopolyspora erythraea
         sace  Saccharopolyspora sp. E2A
         sacg  Saccharopolyspora sp. ASAGF58
   2/11
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       Saccharomonospora (2)
       Amycolatopsis (11)
         amd  Amycolatopsis mediterranei U32
         amn  Amycolatopsis mediterranei S699
         amm  Amycolatopsis mediterranei S699
         amz  Amycolatopsis mediterranei RB
         aoi  Amycolatopsis keratiniphila
         aja  Amycolatopsis japonica
         amq  Amycolatopsis methanolica
         amyb  Amycolatopsis sp. BJA-103
         aab  Amycolatopsis albispora
         amyy  Amycolatopsis sp. YIM 10
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       Pseudonocardia (8)
         psea  Pseudonocardia sp. AL041005-10
         psee  Pseudonocardia sp. EC080625-04
         pseh  Pseudonocardia sp. HH130629-09
         pseq  Pseudonocardia sp. EC080610-09
         pecq  Pseudonocardia sp EC080619-01
         paut  Pseudonocardia autotrophica
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       Actinosynnema (2)
         apre  Actinosynnema pretiosum
         ami  Actinosynnema mirum
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       Saccharothrix (2)
         sesp  Saccharothrix espanaensis
         ssyi  Saccharothrix syringae
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       Kutzneria (1)
         kal  Kutzneria albida
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       Kibdelosporangium (1)
         kphy  Kibdelosporangium phytohabitans
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       Lentzea (1)
         led  Lentzea guizhouensis
   2/11
       Actinoalloteichus (5)
       Alloactinosynnema (1)
       Prauserella (1)
         pmad  Prauserella marina
   2/11
       Salinispora (2)
       Micromonospora (6)
         mau  Micromonospora aurantiaca
         mil  Micromonospora sp. L5
         micb  Micromonospora sp. B006
         mtua  Micromonospora tulbaghiae
         mich  Micromonospora sp. HM134
         mtem  Micromonospora terminaliae
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       Verrucosispora (1)
       Actinoplanes (5)
         ase  Actinoplanes sp. SE50/110
         ams  Actinoplanes missouriensis
         actn  Actinoplanes sp. N902-109
         afs  Actinoplanes friuliensis
         acts  Actinoplanes sp. SE50
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       Plantactinospora (3)
         plk  Plantactinospora sp. KBS50
         plab  Plantactinospora sp. BC1
         plat  Plantactinospora sp. BB1
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       Phytohabitans (2)
         pfla  Phytohabitans flavus
         psuu  Phytohabitans suffuscus
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       Catenulispora (1)
         cai  Catenulispora acidiphila
   3/11
       Stackebrandtia (1)
         sna  Stackebrandtia nassauensis
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       Arcanobacterium (2)
       Mobiluncus (1)
       Trueperella (3)
       Actinotignum (2)
       Schaalia (2)
       Actinomyces (11)
       Flaviflexus (2)
       Bifidobacterium (56)
         blo  Bifidobacterium longum NCC2705
         blj  Bifidobacterium longum DJO10A
         blf  Bifidobacterium longum subsp. infantis 157F
         bll  Bifidobacterium longum subsp. longum JDM301
         blb  Bifidobacterium longum subsp. longum BBMN68
         blm  Bifidobacterium longum subsp. longum JCM 1217
         blk  Bifidobacterium longum subsp. longum KACC 91563
         blg  Bifidobacterium longum subsp. longum F8
         blz  Bifidobacterium longum subsp. longum GT15
         blx  Bifidobacterium longum BXY01
         bla  Bifidobacterium animalis subsp. lactis AD011
         blc  Bifidobacterium animalis subsp. lactis Bl-04
         blt  Bifidobacterium animalis subsp. lactis DSM 10140
         bbb  Bifidobacterium animalis subsp. lactis BB-12
         bbc  Bifidobacterium animalis subsp. lactis BLC1
         bnm  Bifidobacterium animalis subsp. lactis CNCM I-2494
         blv  Bifidobacterium animalis subsp. lactis V9
         blw  Bifidobacterium animalis subsp. lactis B420
         bls  Bifidobacterium animalis subsp. lactis Bi-07
         bani  Bifidobacterium animalis subsp. lactis Bl12
         banl  Bifidobacterium animalis subsp. lactis ATCC 27673
         bni  Bifidobacterium animalis subsp. animalis ATCC 25527
         banm  Bifidobacterium animalis RH
         bcho  Bifidobacterium choerinum
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       Gardnerella (3)
       Scardovia (1)
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       Actinopolyspora (1)
         aey  Actinopolyspora erythraea
   2/11
       Planktophila (6)
       Nanopelagicus (3)
       Epidermidibacterium (1)
       Unclassified Actinobacteria (1)
         abai  Actinobacteria bacterium
   2/11
       Rubrobacter (3)
         rxy  Rubrobacter xylanophilus
         rrd  Rubrobacter radiotolerans
         rub  Rubrobacter sp. SCSIO 52909
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       Baekduia (1)
       Conexibacter (1)
         cwo  Conexibacter woesei
   2/11
       Acidimicrobium (1)
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       Olsenella (2)
         ols  Olsenella uli
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       Parolsenella (1)
       Coriobacterium (1)
       Collinsella (1)
       Unclassified Coriobacteriaceae (1)
         cbac  Coriobacteriaceae bacterium 68-1-3
   2/11
       Egibacter (1)
       Euzebya (1)
     Cyanobacteria (128)
       Synechocystis (8)
       Synechococcus (23)
       Thermosynechococcus (4)
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         glj  Gloeobacter kilaueensis
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       Calothrix (3)
         calo  Calothrix sp. PCC 7507
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       Unclassified Nostocales (1)
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     Chloroflexi (31)
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         rrs  Roseiflexus sp. RS-1
         rca  Roseiflexus castenholzii
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       Chloroflexus (3)
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         tro  Thermomicrobium roseum
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       Brevefilum (1)
         abat  Brevefilum fermentans
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       Pelolinea (1)
       Unclassified Anaerolineaceae (1)
         abao  Anaerolineaceae bacterium oral taxon 439
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       Caldilinea (1)
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       Unclassified Ktedonobacterales (1)
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     Deinococcus-Thermus (33)
       Deinococcus (16)
       Truepera (1)
       Thermus (10)
       Meiothermus (4)
         mrb  Meiothermus ruber DSM 1279
         mre  Meiothermus ruber DSM 1279
         mtai  Meiothermus taiwanensis
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       Oceanithermus (1)
       Marinithermus (1)
     Other Terrabacteria group (3)
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       Thermobaculum (1)
         ttr  Thermobaculum terrenum
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     Chlamydiae (120)
       Chlamydia (114)
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     Verrucomicrobia (14)
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       Roseimicrobium (1)
       Luteolibacter (1)
       Xiphinematobacter (1)
       Methylacidiphilum (2)
       Unclassified Verrucomicrobia (2)
         vba  Verrucomicrobia bacterium IMCC26134
   2/11
     Planctomycetes (31)
       Rhodopirellula (1)
       Pirellula (2)
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       Planctopirus (2)
       Rubinisphaera (1)
       Planctomyces (2)
         pls  Planctomyces sp. SH-PL14
         plh  Planctomyces sp. SH-PL62
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       Fuerstia (1)
       Gimesia (2)
       Bremerella (1)
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       Tuwongella (1)
       Limnoglobus (1)
       Isosphaera (1)
         ipa  Isosphaera pallida
   2/11
       Singulisphaera (1)
         saci  Singulisphaera acidiphila
   2/11
       Paludisphaera (1)
         pbor  Paludisphaera borealis
   2/11
       Aquisphaera (1)
         agv  Aquisphaera giovannonii
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       Kuenenia (1)
       Phycisphaera (1)
         phm  Phycisphaera mikurensis
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       Sedimentisphaera (2)
         pbu  Sedimentisphaera cyanobacteriorum L21-RPul-D3
         pbp  Sedimentisphaera salicampi
   2/11
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       Limihaloglobus (1)
         pbas  Limihaloglobus sulfuriphilus
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       Anaerohalosphaera (1)
         alus  Anaerohalosphaera lusitana
   2/11
     Kiritimatiellaeota (1)
       Kiritimatiella (1)
 
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       Unclassified Victivallales (1)
 
     Spirochaetes (86)
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       Borrelia (11)
       Treponema (23)
         taz  Treponema azotonutricium
         tpi  Treponema primitia
         scd  Treponema caldarium
   2/11
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       Sediminispirochaeta (1)
         ssm  Sediminispirochaeta smaragdinae
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       Spirochaeta (4)
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         slr  Salinispira pacifica
   4/11
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     Acidobacteria (13)
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         tsa  Terriglobus saanensis
   2/11
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       Edaphobacter (1)
         eda  Edaphobacter sp. 12200R-103
   2/11
       Solibacter (1)
         sus  Candidatus Solibacter usitatus
   2/11
       Chloracidobacterium (1)
         ctm  Chloracidobacterium thermophilum
   2/11
       Luteitalea (1)
         abac  Luteitalea pratensis
   2/11
     Elusimicrobia (4)
       Elusimicrobium (1)
         emi  Elusimicrobium minutum
   2/11
       Endomicrobium (2)
         epo  Endomicrobium proavitum
   2/11
       Termite group 1 (1)
     Fusobacteria (24)
       Fusobacterium (13)
         fhw  Fusobacterium hwasookii
         fpd  Fusobacterium pseudoperiodonticum
   4/11
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       Ilyobacter (1)
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       Fretibacterium (1)
         sbr  Fretibacterium fastidiosum
   5/11
       Cloacibacillus (1)
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       Gemmatimonas (2)
         gau  Gemmatimonas aurantiaca
         gph  Gemmatimonas phototrophica
   2/11
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       Gemmatirosa (1)
     Bacteroidetes (359)
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       Unclassified Bacteroidales (1)
       Draconibacterium (2)
         dori  Draconibacterium orientale
         drc  Draconibacterium sp. M1
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       Salinivirga (1)
       Alkalitalea (1)
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       Salinibacter (2)
         sru  Salinibacter ruber DSM 13855
         srm  Salinibacter ruber M8
   4/11
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       Rhodothermus (2)
       Unclassified Rhodothermaceae (1)
         rbar  Rhodothermaceae bacterium RA
   4/11
       Chitinophaga (4)
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       Niabella (2)
       Flavisolibacter (2)
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         pgin  Panacibacter ginsenosidivorans
   2/11
       Pseudobacter (1)
       Flavihumibacter (1)
         fls  Flavihumibacter sp. SB-02
   2/11
       Haliscomenobacter (1)
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       Pedobacter (7)
         phe  Pedobacter heparinus
         pcm  Pedobacter cryoconitis
   2/11
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       Pseudopedobacter (1)
       Sphingobacterium (9)
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       Cyclobacterium (2)
       Belliella (1)
         bbd  Belliella baltica
   3/11
       Echinicola (3)
         evi  Echinicola vietnamensis
         est  Echinicola strongylocentroti
   3/11
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       Algoriphagus (1)
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       Dyadobacter (1)
         dfe  Dyadobacter fermentans
   2/11
       Spirosoma (6)
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       Runella (3)
         run  Runella sp. HYN0085
         rup  Runella sp. SP2
   2/11
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       Emticicia (1)
       Fibrella (2)
         fib  Fibrella sp. ES10-3-2-2
   2/11
       Allopseudarcicella (1)
       Arcticibacterium (1)
         als  Arcticibacterium luteifluviistationis
   2/11
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       Hymenobacter (10)
         hyj  Hymenobacter jejuensis
   2/11
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         grl  Gramella salexigens
         grs  Gramella fulva
   2/11
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       Flavobacterium (25)
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       Robiginitalea (1)
         rbi  Robiginitalea biformata
   2/11
       Zunongwangia (1)
         zpr  Zunongwangia profunda
   2/11
       Croceibacter (1)
         cat  Croceibacter atlanticus
   2/11
       Riemerella (6)
       Maribacter (5)
         marm  Maribacter sp. 1_2014MBL_MicDiv
         mart  Maribacter sp. T28
         marb  Maribacter cobaltidurans
   2/11
   2/11
   2/11
       Cellulophaga (5)
       Weeksella (1)
       Dokdonia (4)
       Lacinutrix (3)
       Zobellia (1)
       Muricauda (3)
         mrs  Muricauda ruestringensis
         mut  Muricauda sp. 501str8
   2/11
   2/11
       Aequorivita (2)
       Ornithobacterium (2)
       Psychroflexus (1)
       Nonlabens (5)
       Polaribacter (5)
       Elizabethkingia (9)
       Myroides (4)
       Chryseobacterium (15)
         cpip  Chryseobacterium piperi
   2/11
       Winogradskyella (2)
       Siansivirga (1)
       Algibacter (1)
       Sediminicola (1)
       Tenacibaculum (5)
       Lutibacter (1)
       Urechidicola (1)
       Wenyingzhuangia (1)
       Formosa (3)
       Salegentibacter (1)
         salt  Salegentibacter sp. T436
   2/11
       Seonamhaeicola (1)
       Arenibacter (1)
       Olleya (2)
       Flavivirga (1)
       Tamlana (1)
       Aureitalea (1)
       Spongiibacterium (1)
       Kordia (2)
       Mariniflexile (1)
       Aquimarina (3)
       Euzebyella (1)
       Cloacibacterium (1)
       Muriicola (1)
       Psychroserpens (1)
       Antarcticibacterium (2)
         afla  Antarcticibacterium flavum
         anp  Antarcticibacterium sp. PAMC 28998
   2/11
   2/11
       Empedobacter (1)
       Oceanihabitans (1)
       Bergeyella (1)
       Marinirhabdus (1)
       Apibacter (1)
       Mesoflavibacter (1)
       Unclassified Flavobacteriaceae (3)
       Sulcia (9)
       Blattabacterium (9)
       Fluviicola (2)
       Owenweeksia (1)
       Ichthyobacterium (1)
       Walczuchella (1)
       Uzinura (1)
       Unclassified Bacteroidetes (1)
     Chlorobi (17)
       Chlorobaculum (3)
       Chlorobium (5)
       Pelodictyon (2)
       Prosthecochloris (4)
       Chloroherpeton (1)
       Ignavibacterium (1)
         ial  Ignavibacterium album
   2/11
       Melioribacter (1)
     Balneolaeota (1)
       Cyclonatronum (1)
 
     Cloacimonetes (1)
       Cloacimonas (1)
 
     Aquificae (14)
       Aquifex (1)
       Hydrogenobaculum (3)
       Hydrogenobacter (2)
       Thermocrinis (2)
       Sulfurihydrogenibium (2)
       Persephonella (1)
       Thermosulfidibacter (1)
       Thermovibrio (1)
       Desulfurobacterium (1)
 
 
 
 
 
 
 
 
 
     Thermotogae (32)
       Thermotoga (13)
       Pseudothermotoga (3)
       Thermosipho (4)
         tme  Thermosipho melanesiensis
         taf  Thermosipho africanus
         thp  Thermosipho sp. 1063
         ther  Thermosipho sp. 1070
   4/11
   4/11
   4/11
   4/11
       Fervidobacterium (3)
         fno  Fervidobacterium nodosum
         fpe  Fervidobacterium pennivorans
         fia  Fervidobacterium islandicum
   4/11
   4/11
   4/11
       Petrotoga (1)
         pmo  Petrotoga mobilis
   4/11
       Marinitoga (2)
         mpz  Marinitoga piezophila
         marn  Marinitoga sp. 1137
   4/11
   4/11
       Defluviitoga (1)
         dtn  Defluviitoga tunisiensis
   4/11
       Kosmotoga (2)
         kol  Kosmotoga olearia
         kpf  Kosmotoga pacifica
   6/11
   6/11
       Mesotoga (2)
         mpg  Mesotoga prima
         minf  Mesotoga infera
   6/11
   6/11
       Athalassotoga (1)
         asac  Athalassotoga saccharophila
   6/11
     Coprothermobacterota (1)
       Coprothermobacter (1)
 
     Caldiserica (1)
       Caldisericum (1)
 
     Chrysiogenetes (1)
       Desulfurispirillum (1)
 
     Deferribacteres (5)
       Deferribacter (1)
       Denitrovibrio (1)
       Calditerrivibrio (1)
       Flexistipes (1)
       Geovibrio (1)
 
 
 
 
 
     Calditrichaeota (1)
       Caldithrix (1)
         caby  Caldithrix abyssi
   2/11
     Dictyoglomi (2)
       Dictyoglomus (2)
 
     Nitrospirae (9)
       Thermodesulfovibrio (1)
       Nitrospira (4)
         nde  Nitrospira defluvii
         nmv  Nitrospira moscoviensis
         nio  Candidatus Nitrospira inopinata
         nja  Nitrospira japonica
   2/11
   2/11
   2/11
   2/11
       Leptospirillum (4)
     Thermodesulfobacteria (7)
       Thermodesulfatator (1)
       Thermodesulfobacterium (3)
       Caldimicrobium (1)
       Thermosulfuriphilus (1)
       Thermosulfurimonas (1)
 
 
 
 
 
     Saccharibacteria (4)
       Saccharimonas (4)
 
     Peregrinibacteria (1)
       Peribacter (1)
 
     Bipolaricaulota (2)
       Bipolaricaulis (2)
 
     Other (4)
       Vampirococcus (1)
       Methylomirabilis (1)
       Chazhemtobacterium (1)
       Babela (1)
 
 
 
 
     Unclassified Bacteria (11)
 
   Archaea (323)
     Euryarchaeota (223)
       Methanocaldococcus (6)
       Methanotorris (1)
       Methanococcus (11)
       Methanothermococcus (1)
       Methanofervidicoccus (1)
       Methanothermobacter (8)
       Methanosphaera (2)
       Methanobrevibacter (6)
       Methanobacterium (10)
       Methanothermus (1)
       Methanopyrus (1)
       Archaeoglobus (5)
         afu  Archaeoglobus fulgidus DSM 4304
         afg  Archaeoglobus fulgidus DSM 8774
         apo  Archaeoglobus profundus
         ave  Archaeoglobus veneficus
         ast  Archaeoglobus sulfaticallidus
   2/11
   2/11
   2/11
   2/11
   2/11
       Ferroglobus (1)
       Geoglobus (2)
       Thermoplasma (2)
       Picrophilus (1)
       Ferroplasma (2)
       Cuniculiplasma (1)
       Unclassified Thermoplasmatales (1)
       Methanomethylophilus (1)
       Methanomassiliicoccus (1)
       Methanoplasma (1)
       Unclassified Thermoplasmata (1)
       Aciduliprofundum (2)
       Pyrococcus (8)
       Thermococcus (27)
       Palaeococcus (1)
       Methanosarcina (23)
       Methanococcoides (2)
       Methanohalophilus (2)
       Methanohalobium (1)
       Methanosalsum (1)
       Methanolobus (1)
       Methanomethylovorans (1)
       Methanosaeta (3)
       Methanospirillum (1)
       Methanocorpusculum (1)
       Methanoculleus (3)
       Methanolacinia (1)
       Methanoregula (2)
       Methanosphaerula (1)
       Methanocella (3)
       Halobacterium (4)
       Halalkalicoccus (1)
       Halodesulfurarchaeum (2)
         halh  Halodesulfurarchaeum formicicum HTSR1
         hhsr  Haloarchaeon HSR6
   2/11
   2/11
       Halanaeroarchaeum (2)
       Salarchaeum (1)
       Haloarcula (6)
       Natronomonas (2)
         nmo  Natronomonas moolapensis
   2/11
       Halorhabdus (3)
       Halomicrobium (3)
       Halorientalis (1)
       Halapricum (1)
       Unclassified Haloarculaceae (1)
       Haloquadratum (2)
         hwa  Haloquadratum walsbyi DSM 16790
         hwc  Haloquadratum walsbyi C23
   2/11
   2/11
       Haloferax (4)
       Halogeometricum (1)
       Haloplanus (4)
       Halobellus (1)
       Haloprofundus (1)
       Halorubrum (5)
       Salinigranum (1)
       Halohasta (1)
       Halolamina (1)
       Halalkaliarchaeum (1)
       Unclassified Haloferacales (1)
       Haloterrigena (3)
       Natrialba (1)
       Halopiger (1)
       Natrinema (4)
       Natronobacterium (1)
         nge  Natronobacterium gregoryi
   2/11
       Halovivax (1)
       Natronococcus (1)
       Salinarchaeum (1)
       Halostagnicola (1)
         hlr  Halostagnicola larsenii
   2/11
       Halobiforma (1)
       Natronolimnobius (3)
       Natronorubrum (2)
       Natrialbaceae (1)
       Unclassified Nanohaloarchaea (1)
     Crenarchaeota (71)
       Aeropyrum (2)
       Staphylothermus (2)
         smr  Staphylothermus marinus
         shc  Staphylothermus hellenicus
   2/11
   2/11
       Ignicoccus (2)
       Desulfurococcus (3)
       Thermosphaera (1)
       Ignisphaera (1)
         iag  Ignisphaera aggregans
   2/11
       Thermogladius (1)
       Hyperthermus (1)
         hbu  Hyperthermus butylicus
   2/11
       Pyrolobus (1)
       Pyrodictium (1)
       Sulfurisphaera (2)
       Saccharolobus (5)
       Sulfolobus (15)
       Metallosphaera (5)
       Acidianus (5)
       Sulfodiicoccus (1)
       Stygiolobus (1)
       Sulfuracidifex (1)
       Pyrobaculum (8)
       Caldivirga (1)
         cma  Caldivirga maquilingensis
   2/11
       Thermoproteus (2)
       Vulcanisaeta (2)
         vdi  Vulcanisaeta distributa
         vmo  Vulcanisaeta moutnovskia
   2/11
   2/11
       Thermofilum (4)
       Acidilobus (2)
       Caldisphaera (1)
       Fervidicoccus (1)
         ffo  Fervidicoccus fontis
   2/11
     Thaumarchaeota (18)
       Nitrosopumilus (6)
       Nitrosomarinus (1)
       Cenarchaeum (1)
       Nitrososphaera (3)
       Nitrosocosmicus (2)
       Nitrosocaldus (1)
       Caldiarchaeum (1)
       Nitrosopelagicus (1)
       Nitrosotenuis (1)
       Nitrosotalea (1)
 
 
 
 
 
 
 
 
 
 
     Korarchaeota (1)
       Korarchaeum (1)
 
     Bathyarchaeota (2)
       Unclassified Bathyarchaeota (2)
         barc  Candidatus Bathyarchaeota archaeon BA1
   2/11
     Geothermarchaeota (1)
       Conexivisphaera (1)
 
     Nanoarchaeota (2)
       Nanoarchaeum (1)
       Nanopusillus (1)
 
 
     Micrarchaeota (1)
       Candidatus Mancarchaeum (1)
 
     Lokiarchaeota (2)
       Lokiarchaeum (1)
         loki  Lokiarchaeum sp. GC14_75
   2/11
       Prometheoarchaeum (1)
     Unclassified Archaea (2)

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Last updated: July 1, 2020

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