KEGG Organisms

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 Eukaryotes (541)
 
   Animals (250)
     Vertebrates (146)
       Mammals (66)
       Birds (24)
       Reptiles (12)
       Amphibians (3)
       Fishes (39)
       Cartilaginous fishes (2)
 
 
 
 
 
 
     Lancelets (1)
     Ascidians (1)
     Echinoderms (2)
     Hemichordates (1)
     Arthropods (72)
       Insects (65)
       Crustaceans (2)
       Chelicerates (5)
 
 
 
     Nematodes (6)
     Annelids (1)
     Mollusks (5)
     Brachiopodas (1)
     Flatworms (4)
     Cnidarians (8)
     Placozoans (1)
     Poriferans (1)
 
   Plants (106)
     Eudicots (75)
       Mustard family (9)
       Caper family (1)
       Papaya family (1)
       Rue family (2)
       Mallow family (5)
       Myrtle family (1)
       Pea family (13)
       Rose family (7)
       Buckthorn family (1)
       Cucumber family (6)
       Spurge family (4)
       Willow family (2)
       Walnut family (1)
       Beech family (1)
       Grape family (1)
       Nightshade family (8)
       Morning-glory family (1)
       Sesame family (1)
       Olive family (1)
       Daisy family (3)
       Parsley family (1)
       Amaranth family (3)
       Lotus family (1)
       Poppy family (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Monocots (14)
       Grass family (8)
       Palm family (2)
       Banana family (1)
       Orchid family (2)
       Asparagus family (1)
 
 
 
 
 
     Basal Magnoliophyta (1)
       Amborella family (1)
 
     Ferns (1)
     Mosses (1)
     Green algae (11)
     Red algae (3)
 
   Fungi (133)
     Ascomycetes (95)
       Saccharomycetes (32)
       Sordariomycetes (27)
       Leotiomycetes (5)
       Eurotiomycetes (19)
       Dothideomycetes (10)
       Pezizomycetes (1)
       Schizosaccharomycetes (1)
 
 
 
 
 
 
 
     Basidiomycetes (33)
     Microsporidians (5)
 
   Protists (52)
     Choanoflagellates (2)
     Amoebozoa (7)
       Dictyostelia (3)
       Entamoeba (3)
       Acanthamoeba (1)
 
 
 
     Alveolates (21)
       Apicomplexans (18)
       Ciliates (2)
       Dinoflagellates (1)
 
 
 
     Stramenopiles (8)
       Diatoms (3)
       Eustigmatophytes (1)
       Pelagophytes (1)
       Oomycetes (3)
 
 
 
 
     Haptophyta (1)
     Cryptomonads (1)
     Euglenozoa (9)
       Kinetoplasts (9)
 
     Heterolobosea (1)
       Tetramitia (1)
 
     Metamonada (2)
       Trichomonads (1)
       Diplomonads (1)
 
 
 
 Prokaryotes (6097)
 
   Bacteria (5772)
     Gammaproteobacteria - Enterobacteria (510)
       Escherichia (69)
       Salmonella (54)
       Shigella (13)
       Enterobacter (31)
       Cronobacter (11)
       Klebsiella (42)
       Citrobacter (15)
       Gibbsiella (1)
       Blochmannia (6)
       Hamiltonella (1)
       unclassified aphid symbionts (2)
       unclassified mealybug symbionts (1)
       Riesia (2)
       Moranella (2)
       Shimwellia (1)
       Raoultella (6)
       Cedecea (4)
       Pluralibacter (3)
       Kosakonia (5)
       Kluyvera (2)
       Ishikawaella (1)
       Leclercia (6)
       Lelliottia (4)
       Limnobaculum (1)
       Buttiauxella (1)
       Tachikawaea (1)
       Doolittlea (1)
       Hoaglandella (1)
       Gullanella (1)
       Mikella (1)
       Purcelliella (1)
       Metakosakonia (1)
       Atlantibacter (1)
       Izhakiella (1)
       Yokenella (1)
       Scandinavium (1)
       unclassified Enterobacteriaceae (4)
       Yersinia (46)
       Serratia (24)
       Chania (1)
       Rahnella (4)
       Fukatsuia (1)
       Pectobacterium (13)
       Sodalis (4)
       Dickeya (11)
       Brenneria (3)
       Lonsdalea (1)
       Erwinia (11)
       Buchnera (18)
       Wigglesworthia (2)
       Pantoea (17)
       Mixta (4)
       Tatumella (2)
       Photorhabdus (4)
       Proteus (8)
       Xenorhabdus (7)
       Providencia (9)
       Morganella (1)
       Arsenophonus (3)
       Edwardsiella (8)
       Hafnia (2)
       Obesumbacterium (1)
       Pragia (2)
       Leminorella (1)
       Phytobacter (2)
       Plesiomonas (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Gammaproteobacteria - Others (839)
       Haemophilus (22)
       Glaesserella (5)
       Histophilus (2)
       Pasteurella (7)
       Basfia (2)
       Mannheimia (15)
       Actinobacillus (10)
       Aggregatibacter (9)
       Gallibacterium (1)
       Bibersteinia (4)
       Avibacterium (2)
       Rodentibacter (2)
       Otariodibacter (1)
       Frederiksenia (1)
       Bisgaardia (1)
       unclassified Pasteurellaceae (1)
       Xylella (9)
       Xanthomonas (38)
       Stenotrophomonas (11)
       Pseudoxanthomonas (3)
       Lysobacter (11)
       Luteimonas (3)
       Thermomonas (2)
       Pseudolysobacter (1)
       Frateuria (1)
       Rhodanobacter (2)
         rgl  Rhodanobacter glycinis
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       Dyella (4)
       Dokdonella (1)
       Luteibacter (2)
       Ahniella (1)
       Aerosticca (1)
       Vibrio (53)
         vaf  Vibrio alfacsensis
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       Aliivibrio (4)
       Photobacterium (3)
       Grimontia (1)
       Paraphotobacterium (1)
       Salinivibrio (3)
       Pseudomonas (114)
         pre  Pseudomonas resinovorans
         pput  Pseudomonas putida H8234
         ppun  Pseudomonas putida NBRC 14164
         pfo  Pseudomonas fluorescens Pf0-1
         pfe  Pseudomonas fluorescens F113
         pcg  Pseudomonas corrugata
         pvr  Pseudomonas veronii
         pba  Pseudomonas brassicacearum subsp. brassicacearum NFM421
         pbc  Pseudomonas brassicacearum DF41
         ppuu  Pseudomonas sp. UW4
         pkc  Pseudomonas knackmussii
         pfz  Pseudomonas fragi
         plq  Psychrobacter sp. FME2
         ppsy  Pseudomonas versuta
         pset  Pseudomonas sp. TCU-HL1
         psil  Pseudomonas silesiensis
         pke  Pseudomonas kribbensis
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       Azotobacter (4)
         acx  Azotobacter chroococcum
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       Oblitimonas (1)
       Permianibacter (1)
       Psychrobacter (12)
         pali  Psychrobacter alimentarius
         psyp  Psychrobacter sp. PAMC27889
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       Acinetobacter (47)
       Moraxella (8)
       unclassified Moraxellaceae (1)
       Shewanella (34)
         spl  Shewanella pealeana
         shl  Shewanella halifaxensis
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       Idiomarina (5)
       Colwellia (7)
         colw  Colwellia sp. PAMC 21821
         cber  Colwellia beringensis
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       Litorilituus (1)
       Thalassotalea (2)
       Pseudoalteromonas (23)
         pha  Pseudoalteromonas haloplanktis
         prr  Pseudoalteromonas rubra
         ptn  Pseudoalteromonas translucida
         png  Pseudoalteromonas nigrifaciens
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       Marinobacter (12)
       Alteromonas (23)
       Glaciecola (2)
       Paraglaciecola (2)
       Lacimicrobium (1)
       Catenovulum (1)
       Saliniradius (1)
       Salinimonas (2)
       Hydrocarboniclastica (1)
       Psychromonas (2)
       Ferrimonas (2)
       Moritella (3)
       Cellvibrio (5)
       Saccharophagus (1)
       Teredinibacter (1)
       Simiduia (1)
       Spongiibacter (1)
         spoi  Spongiibacter sp. IMCC21906
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       Zhongshania (1)
         zal  Zhongshania aliphaticivorans
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       Oceanicoccus (1)
         osg  Oceanicoccus sagamiensis
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       Microbulbifer (6)
         maga  Microbulbifer agarilyticus
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       Halioglobus (2)
         hja  Halioglobus japonicus
         halc  Halioglobus maricola
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       Kineobactrum (1)
         kim  Kineobactrum sp. M2
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       Coxiella (8)
       Rickettsiella (1)
       Aquicella (2)
         asip  Aquicella siphonis
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       Legionella (23)
         lcj  Legionella cherrii
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       Tatlockia (1)
       Methylococcus (2)
       Methylomonas (5)
         mdh  Methylomonas sp. DH-1
         mko  Methylomonas koyamae
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       Methylomicrobium (2)
       Methylovulum (1)
         mpsy  Methylovulum psychrotolerans
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       Methylocaldum (1)
       Methylospira (1)
       Francisella (43)
         fcf  Francisella cf. novicida Fx1
         fph  Francisella philomiragia subsp. philomiragia ATCC 25017
         fpt  Francisella philomiragia subsp. philomiragia ATCC 25015 O#319L
         fpi  Francisella philomiragia O#319-029
         fpm  Francisella philomiragia O#319-036
         fpx  Francisella philomiragia O#319-067
         fpz  Francisella philomiragia GA01-2794
         fpj  Francisella philomiragia GA01-2801
         frt  Francisella salina
         frf  Francisella sp. FSC1006
         frx  Francisella uliginis
         fad  Francisella adeliensis
         fmi  Francisella marina
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       Allofrancisella (2)
       Hydrogenovibrio (2)
       Thiomicrospira (3)
       Methylophaga (2)
       Cycloclasticus (3)
       Piscirickettsia (1)
       Thiomicrorhabdus (1)
       Thioploca (1)
       Beggiatoa (1)
       Nitrosococcus (4)
       Allochromatium (1)
       Thiocystis (1)
       Thioflavicoccus (1)
       Marichromatium (1)
       Tenderia (1)
       Nitrosoglobus (1)
       Thiodictyon (1)
       Rheinheimera (1)
       Thermochromatium (1)
       Alkalilimnicola (1)
       Halorhodospira (2)
       Ectothiorhodospira (2)
       Thioalkalivibrio (5)
       Spiribacter (4)
       Acidihalobacter (1)
       Halothiobacillus (2)
       Wenzhouxiangella (1)
       Woeseia (1)
       Granulosicoccus (1)
       Guyparkeria (1)
       Thiohalobacter (1)
       Hahella (2)
       Chromohalobacter (1)
       Halomonas (18)
         haf  Halomonas sp. SF2003
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       Portiera (9)
       Carsonella (7)
       Evansia (1)
       Zymobacter (1)
       Halotalea (1)
       Cobetia (1)
         cmai  Cobetia marina
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       Kushneria (3)
       Pistricoccus (1)
       Alcanivorax (5)
         axe  Alcanivorax xenomutans
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       Ketobacter (1)
         kak  Ketobacter alkanivorans
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       Kangiella (4)
       Marinomonas (3)
       Thalassolituus (2)
       Oleispira (1)
         oai  Oleispira antarctica
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       Marinobacterium (1)
       Bacterioplanes (1)
         bsan  Bacterioplanes sanyensis
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       Neptunomonas (1)
       Nitrincola (1)
         nik  Nitrincola sp. KXZD1103
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       Bermanella (1)
       Gynuella (1)
       Reinekea (1)
       Oleiphilus (1)
       Litoricola (1)
       Aeromonas (22)
       Tolumonas (1)
       Oceanimonas (1)
       Oceanisphaera (2)
       Zobellella (1)
       Dichelobacter (1)
       Cardiobacterium (1)
       Gilliamella (1)
       Frischella (1)
       Orbus (1)
       Steroidobacter (1)
         sdf  Steroidobacter denitrificans
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       Solimonas (1)
         sok  Solimonas sp. K1W22B-7
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       Sinimarinibacterium (1)
         sini  Sinimarinibacterium sp. NLF-5-8
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       Immundisolibacter (1)
         gbi  Immundisolibacter cernigliae
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       Sulfuricaulis (1)
       Sulfurifustis (1)
       Acidiferrobacter (1)
       Salinisphaera (1)
       Thiolapillus (1)
       Sedimenticola (1)
       Thioglobus (3)
       Pseudohongiella (1)
       Nardonella (1)
       Reidiella (1)
       Ruthia (1)
       Vesicomyosocius (1)
       unclassified Gammaproteobacteria (6)
         gpb  Gamma proteobacterium HdN1
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     Betaproteobacteria (445)
       Neisseria (29)
       Snodgrassella (1)
       Kingella (1)
       Vitreoscilla (2)
       Eikenella (2)
       Simonsiella (1)
       unclassified Neisseriaceae (1)
       Chromobacterium (7)
       Iodobacter (1)
       Laribacter (1)
       Pseudogulbenkiania (1)
       Jeongeupia (1)
       Aquaspirillum (1)
         aql  Aquaspirillum sp. LM1
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       Aquitalea (2)
       Deefgea (1)
       Ralstonia (13)
         rpj  Ralstonia pickettii DTP0602
         rin  Ralstonia insidiosa
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       Cupriavidus (13)
         reh  Cupriavidus necator H16
         cnc  Cupriavidus necator N-1
         cuh  Cupriavidus necator NH9
         reu  Cupriavidus pinatubonensis JMP134
         cti  Cupriavidus taiwanensis
         cbw  Cupriavidus basilensis
         cgd  Cupriavidus gilardii
         ccup  Cupriavidus sp. USMAHM13
         cup  Cupriavidus malaysiensis
         cuu  Cupriavidus sp. USMAA2-4
         cox  Cupriavidus oxalaticus
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       Burkholderia (89)
         bmv  Burkholderia mallei SAVP1
         bml  Burkholderia mallei NCTC 10229
         bmn  Burkholderia mallei NCTC 10247
         bmal  Burkholderia mallei 23344
         bmae  Burkholderia mallei 6
         bmaq  Burkholderia mallei BMQ
         bmai  Burkholderia mallei 2000031063
         bmaf  Burkholderia mallei FMH 23344
         bmaz  Burkholderia mallei NCTC 10247
         bmab  Burkholderia mallei 2002734299
         bpm  Burkholderia pseudomallei 1710b
         bpl  Burkholderia pseudomallei 1106a
         bpd  Burkholderia pseudomallei 668
         bpse  Burkholderia pseudomallei MSHR305
         bpsm  Burkholderia pseudomallei MSHR511
         bpsu  Burkholderia pseudomallei MSHR146
         bpsd  Burkholderia pseudomallei MSHR520
         bpz  Burkholderia pseudomallei 1026b
         bpq  Burkholderia pseudomallei BPC006
         bpk  Burkholderia pseudomallei NCTC 13179
         bpsh  Burkholderia pseudomallei HBPUB10134a
         bpsa  Burkholderia pseudomallei NAU35A-3
         bpso  Burkholderia pseudomallei A79A
         but  Burkholderia pseudomallei TSV202
         buu  Burkholderia sp. BDU6
         bve  Burkholderia vietnamiensis LMG 10929
         bur  Burkholderia lata
         bcj  Burkholderia cenocepacia J2315
         bcen  Burkholderia cenocepacia DDS 22E-1
         bceo  Burkholderia cenocepacia H111
         bam  Burkholderia ambifaria AMMD
         bmul  Burkholderia multivorans ATCC BAA-247
         bct  Burkholderia cepacia GG4
         bced  Burkholderia cepacia DDS 7H-2
         bcep  Burkholderia cepacia ATCC 25416
         bpyr  Burkholderia pyrrocinia
         bcon  Burkholderia contaminans
         bdf  Burkholderia diffusa
         btei  Burkholderia territorii
         bpsl  Burkholderia pseudomultivorans
         bmec  Burkholderia metallica
         bstl  Burkholderia stabilis
         bug  Burkholderia sp. CCGE1001
         buq  Burkholderia sp. HB1
         bpla  Burkholderia plantarii ATCC 43733
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       Paraburkholderia (18)
         bxb  Paraburkholderia xenovorans LB400
         bph  Paraburkholderia phymatum
         bge  Paraburkholderia sp. CCGE1002
         bpx  Paraburkholderia phenoliruptrix
         bpy  Paraburkholderia phytofirmans
         bfn  Paraburkholderia fungorum
         pspw  Paraburkholderia sprentiae
         pter  Paraburkholderia terrae
         pgp  Paraburkholderia graminis
         pcaf  Paraburkholderia caffeinilytica
         pmeg  Paraburkholderia megapolitana
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       Mycetohabitans (1)
       Polynucleobacter (4)
       Pandoraea (14)
         pve  Pandoraea vervacti
         pox  Pandoraea oxalativorans
         pfib  Pandoraea fibrosis
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       Paucimonas (1)
       Ephemeroptericola (1)
       Lautropia (1)
       Mycoavidus (1)
       Caballeronia (1)
         caba  Caballeronia sp. SBC2
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       Limnobacter (1)
       Bordetella (24)
         bpar  Bordetella parapertussis Bpp5
         bpa  Bordetella parapertussis 12822
         bbh  Bordetella bronchiseptica 253
         bbr  Bordetella bronchiseptica RB50
         bbm  Bordetella bronchiseptica MO149
         bbx  Bordetella bronchiseptica S798
         bpdz  Bordetella pseudohinzii
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       Achromobacter (9)
       Taylorella (5)
       Pusillimonas (3)
       Advenella (2)
         aka  Advenella kashmirensis
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       Castellaniella (1)
       Basilea (1)
       Alcaligenes (3)
       Paenalcaligenes (1)
       Orrella (1)
       Oligella (1)
       Pigmentiphaga (2)
       Kerstersia (1)
       Rhodoferax (6)
       Polaromonas (5)
       Acidovorax (11)
       Verminephrobacter (1)
       Delftia (4)
       Variovorax (6)
       Comamonas (5)
         ctt  Comamonas thiooxydans
         ctes  Comamonas testosteroni TK102
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       Alicycliphilus (2)
         adk  Alicycliphilus denitrificans K601
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       Ramlibacter (1)
       Symbiobacter (1)
       Ottowia (2)
       Limnohabitans (2)
       Hydrogenophaga (6)
         hyn  Hydrogenophaga sp. BPS33
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       Diaphorobacter (2)
         dih  Diaphorobacter sp. HDW4A
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       Simplicispira (1)
       Melaminivora (2)
       Serpentinomonas (2)
       Methylibium (2)
         mpt  Methylibium petroleiphilum
         metp  Methylibium sp. Pch-M
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       Herminiimonas (1)
       Janthinobacterium (8)
       Herbaspirillum (6)
       Zinderia (1)
       Collimonas (3)
       Massilia (10)
       Oxalobacter (1)
       Undibacterium (2)
       Noviherbaspirillum (1)
       Duganella (1)
       Sutterella (2)
       Leptothrix (1)
       Thiomonas (2)
       Rubrivivax (2)
       Roseateles (1)
       Paucibacter (1)
       Mitsuaria (1)
       Rhizobacter (1)
       Aquabacterium (1)
       Sphaerotilus (1)
       Xylophilus (1)
       unclassified Burkholderiales (3)
       Nitrosomonas (7)
       Nitrosospira (2)
       Sulfuritalea (1)
       Methyloversatilis (1)
       Thiobacillus (1)
       Methylobacillus (1)
       Methylotenera (2)
       Methylovorus (2)
       Methylopumilus (2)
       Methylophilus (1)
       Sideroxydans (1)
       Gallionella (1)
       Sulfuricella (1)
       Sulfuriferula (3)
       Ferriphaselus (1)
       Nitrotoga (1)
       Aromatoleum (1)
       Azospira (1)
       Rugosibacter (1)
       Oryzomicrobium (1)
       unclassified Rhodocyclaceae (1)
       Dechloromonas (2)
       Azoarcus (9)
         azi  Azoarcus sp. CIB
         atw  Azoarcus sp. SY39
         azd  Azoarcus sp. DN11
         azr  Azoarcus sp. DD4
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       Thauera (5)
         thu  Thauera humireducens
         thk  Thauera sp. K11
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       unclassified Zoogloeaceae (1)
       Ferrovum (1)
       Accumulibacter (1)
       Tremblaya (3)
       Kinetoplastibacterium (8)
       Profftella (1)
       Nasuia (1)
       Vidania (1)
       unclassified Betaproteobacteria (3)
     Epsilonproteobacteria (187)
       Helicobacter (76)
       Wolinella (1)
       Sulfurimonas (5)
       Sulfuricurvum (2)
       Campylobacter (67)
       Arcobacter (13)
       Aliiarcobacter (2)
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       Pseudoarcobacter (1)
       unclassified Arcobacter (2)
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       Nitratiruptor (1)
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       Caminibacter (1)
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     Deltaproteobacteria (90)
       Geobacter (11)
         gme  Geobacter metallireducens
   4/15
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       Pelobacter (4)
       Desulfuromonas (2)
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       Desulfosarcina (3)
       Anaeromyxobacter (4)
         ade  Anaeromyxobacter dehalogenans 2CP-C
         acp  Anaeromyxobacter dehalogenans 2CP-1
         ank  Anaeromyxobacter sp. K
   2/15
   2/15
   2/15
       Myxococcus (3)
         msd  Myxococcus stipitatus
   5/15
       Corallococcus (3)
         ccx  Corallococcus coralloides
   4/15
       Stigmatella (1)
         sur  Stigmatella aurantiaca
   3/15
       Archangium (1)
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         cfus  Cystobacter fuscus
   5/15
       Vulgatibacter (1)
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         scl  Sorangium cellulosum So ce56
         scu  Sorangium cellulosum So0157-2
   2/15
   3/15
       Chondromyces (1)
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         samy  Sandaracinus amylolyticus
   2/15
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         mrm  Minicystis rosea
   3/15
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     Alphaproteobacteria (703)
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       unclassified Rickettsiales (2)
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       unclassified Holosporaceae (1)
       Mesorhizobium (11)
         meso  Mesorhizobium sp. B7
   2/15
       Chelativorans (1)
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         pla  Parvibaculum lavamentivorans
   2/15
       Pyruvatibacter (1)
       unclassified Rhodobiaceae (1)
       Sinorhizobium (15)
       Ensifer (4)
       Agrobacterium (10)
         avi  Agrobacterium vitis
   2/15
       Rhizobium (26)
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       Brucella (44)
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       Bradyrhizobium (18)
         bgq  Bradyrhizobium guangdongense
         bgz  Bradyrhizobium guangzhouense
   2/15
   2/15
       Rhodopseudomonas (7)
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         xau  Xanthobacter autotrophicus
   2/15
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         sno  Starkeya novella
   2/15
       Labrys (1)
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       Methylobacterium (14)
         mrd  Methylobacterium radiotolerans
         mtea  Methylobacterium terrae
   3/15
   4/15
       Microvirga (3)
         miv  Microvirga sp. 17 mud 1-3
   3/15
       Beijerinckia (1)
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       unclassified Beijerinckiaceae (1)
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         rhz  Rhodoplanes sp. Z2-YC6860
   5/15
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         thd  Candidatus Tokpelaia hoelldoblerii
   3/15
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       Hartmannibacter (1)
       Nordella (1)
       Methyloligella (1)
         metg  Methyloligella sp. GL2
   5/15
       unclassified Rhizobiales (1)
         rbm  Rhizobiales bacterium NRL2
   2/15
       Caulobacter (8)
       Phenylobacterium (2)
       Brevundimonas (10)
       Asticcacaulis (1)
         aex  Asticcacaulis excentricus
   3/15
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       Ruegeria (4)
       Epibacterium (1)
       Rhodobacter (7)
       Jannaschia (1)
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         oat  Octadecabacter antarcticus
   3/15
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         con  Confluentimicrobium sp. EMB200-NS6
   2/15
       Rhodovulum (3)
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         daa  Defluviimonas alba
   3/15
       Yangia (2)
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         pseb  Pseudorhodobacter sp. S12M18
   3/15
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       Monaibacterium (1)
       Mameliella (1)
       Thalassobius (1)
         tgl  Thalassobius gelatinovorus
   3/15
       unclassified Rhodobacteraceae (3)
       Maricaulis (1)
       Hyphomonas (1)
         hne  Hyphomonas neptunium
   2/15
       Hirschia (1)
       Glycocaulis (1)
       Hyphomonadaceae (1)
       Zymomonas (8)
       Novosphingobium (10)
         nar  Novosphingobium aromaticivorans
         npp  Novosphingobium sp. PP1Y
         npn  Novosphingobium pentaromativorans
         nre  Novosphingobium resinovorum
         nov  Novosphingobium sp. P6W
         not  Novosphingobium sp. THN1
         ntd  Novosphingobium tardaugens
         ngf  Novosphingobium ginsenosidimutans
         nog  Novosphingobium sp. Gsoil 351
  11/15
  11/15
   4/15
   6/15
   9/15
  11/15
  11/15
   6/15
   4/15
       Sphingopyxis (12)
         sphk  Sphingopyxis fribergensis
         smaz  Sphingopyxis macrogoltabida 203
         sgi  Sphingopyxis granuli
         sphq  Sphingopyxis sp. QXT-31
   6/15
   3/15
   2/15
   4/15
       Sphingomonas (17)
         swi  Sphingomonas wittichii
         sphd  Sphingomonas wittichii DC-6
         sphm  Sphingomonas sp. MM-1
         sphi  Sphingomonas hengshuiensis
         ssan  Sphingomonas sanxanigenens
         span  Sphingomonas panacis
         skr  Sphingomonas koreensis
         spkc  Sphingomonas sp. KC8
         spha  Sphingomonas sp. YZ-8
  12/15
  13/15
   7/15
   4/15
   9/15
   5/15
   4/15
   8/15
  11/15
       Sphingobium (15)
         sjp  Sphingobium japonicum
         sch  Sphingobium chlorophenolicum
         syb  Sphingobium sp. YBL2
         sbd  Sphingobium baderi
         spmi  Sphingobium sp. MI1205
         sphb  Sphingobium sp. EP60837
         sphr  Sphingobium sp. RAC03
         sinb  Sphingobium indicum
         spht  Sphingobium sp. TKS
         shyd  Sphingobium hydrophobicum
         sya  Sphingobium yanoikuyae
         sclo  Sphingobium cloacae
         sufl  Sphingobium fuliginis
   5/15
   3/15
   7/15
   2/15
   7/15
   8/15
   5/15
   4/15
   3/15
   5/15
   3/15
   4/15
   3/15
       Citromicrobium (1)
         cij  Citromicrobium sp. JL477
   4/15
       Sphingorhabdus (3)
         sphg  Sphingorhabdus sp. M41
         sfla  Sphingorhabdus sp. SMR4y
         sphy  Sphingorhabdus sp. YGSMI21
   6/15
   6/15
   5/15
       Blastomonas (2)
         blas  Blastomonas sp. RAC04
         bfw  Blastomonas fulva
   4/15
   4/15
       Rhizorhabdus (1)
         rdi  Rhizorhabdus dicambivorans
   7/15
       Sphingosinicella (2)
         smic  Sphingosinicella microcystinivorans
   5/15
       Tardibacter (1)
         sphj  Tardibacter chloracetimidivorans
   6/15
       Sphingosinithalassobacter (1)
         spzr  Sphingosinithalassobacter sp. zrk23
   2/15
       Hankyongella (1)
       Parasphingopyxis (1)
       Erythrobacter (8)
         elq  Erythrobacter litoralis DSM 8509
         erk  Erythrobacter sp. KY5
         erf  Erythrobacter sp. THAF29
   6/15
   2/15
   4/15
       Altererythrobacter (7)
         alh  Altererythrobacter sp. BO-6
   6/15
       Croceicoccus (2)
         cman  Croceicoccus marinus
   5/15
       Porphyrobacter (4)
         pns  Porphyrobacter neustonensis
         porl  Porphyrobacter sp. LM 6
         phz  Porphyrobacter sp. HT-58-2
         pot  Porphyrobacter sp. YT40
   3/15
   5/15
  12/15
   4/15
       Gluconobacter (5)
       Granulobacter (4)
       Acidiphilium (2)
       Gluconacetobacter (2)
         gdi  Gluconacetobacter diazotrophicus PA1 5 (Brazil)
         gdj  Gluconacetobacter diazotrophicus PA1 5 (JGI)
   3/15
   3/15
       Komagataeibacter (6)
         kna  Komagataeibacter nataicola
   3/15
       Acetobacter (19)
       Asaia (1)
       Kozakia (1)
       Roseomonas (3)
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       Commensalibacter (2)
       Stella (2)
         shum  Stella humosa
         svc  Stella vacuolata
   5/15
   4/15
       Neokomagataea (2)
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       Rhodospirillum (3)
         rce  Rhodospirillum centenum
   3/15
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       Tistrella (1)
       Endolissoclinum (2)
       Thalassospira (3)
         txi  Thalassospira xiamenensis
         thac  Thalassospira marina
   3/15
   3/15
       Magnetospira (1)
       Haematospirillum (1)
       Nitrospirillum (1)
         nao  Nitrospirillum amazonense
   3/15
       Niveispirillum (1)
         ncb  Niveispirillum cyanobacteriorum
   4/15
       Ferrovibrio (1)
       Hypericibacter (2)
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       Pelagibacter (3)
       unclassified Pelagibacteraceae (2)
       Emcibacter (1)
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     Oligoflexia (12)
       Bdellovibrio (8)
       Halobacteriovorax (2)
       Bacteriovorax (1)
       unclassified Silvanigrellales (1)
 
 
 
 
     Other proteobacteria (10)
       Acidithiobacillus (7)
       Mariprofundus (2)
       Hydrogenophilus (1)
 
 
 
     Firmicutes - Bacilli (817)
       Bacillus (140)
       Oceanobacillus (3)
       Geobacillus (18)
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       Salimicrobium (1)
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       Pradoshia (1)
         prd  Pradoshia sp. D12
   2/15
       Gracilibacillus (1)
       Salicibibacter (2)
       Pontibacillus (1)
       Sporolactobacillus (1)
       unclassified Sporolactobacillaceae (1)
       Staphylococcus (92)
       Macrococcus (3)
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       Listeria (47)
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       Paenibacillus (49)
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       Kroppenstedtia (2)
       Lactococcus (19)
       Streptococcus (149)
       Lactobacillus (101)
         lpar  Lactobacillus parabuchneri
         lzy  Lactobacillus zymae
   3/15
   3/15
       Pediococcus (6)
       Enterococcus (23)
       Melissococcus (2)
       Tetragenococcus (4)
       Vagococcus (5)
       Oenococcus (3)
         ooe  Oenococcus oeni
         oen  Oenococcus sp. UCMA 16435
         osi  Oenococcus sicerae
   3/15
   3/15
   3/15
       Leuconostoc (13)
       Weissella (11)
       Aerococcus (7)
       Abiotrophia (1)
       unclassified Aerococcaceae (1)
       Carnobacterium (6)
       Marinilactibacillus (1)
       Jeotgalibaca (5)
       Dolosigranulum (1)
     Firmicutes - Clostridia (231)
       Clostridium (54)
       Alkaliphilus (2)
       Arthromitus (4)
       Geosporobacter (1)
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       Caloramator (1)
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       Caloranaerobacter (1)
       Mageeibacillus (1)
       Fastidiosipila (1)
       Hungateiclostridium (4)
       unclassified Hungateiclostridiaceae (1)
       Ruminiclostridium (1)
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       unclassified Ruminococcaceae (4)
       Flavonifractor (1)
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       Blautia (6)
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       Lachnospira (1)
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       Enterocloster (1)
       unclassified Lachnospiraceae (4)
       Clostridioides (5)
       Peptoclostridium (1)
       Acetoanaerobium (1)
       Filifactor (1)
       Paeniclostridium (1)
       Romboutsia (1)
       Peptacetobacter (1)
       unclassified Peptostreptococcaceae (1)
       Symbiobacterium (1)
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       Syntrophocurvum (1)
       Desulfitobacterium (5)
         dsy  Desulfitobacterium hafniense Y51
         dhd  Desulfitobacterium hafniense DCB-2
         ddh  Desulfitobacterium dehalogenans
   2/15
   2/15
   2/15
       Desulfotomaculum (4)
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       Sulfobacillus (3)
       Carboxydocella (1)
       Christensenella (1)
       Intestinimonas (1)
       Mogibacterium (1)
       Aminipila (3)
       unclassified Clostridiales (4)
       Caldanaerobacter (1)
       Thermoanaerobacter (8)
       Carboxydothermus (1)
       Tepidanaerobacter (2)
       Moorella (3)
       Ammonifex (1)
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     Firmicutes - Others (46)
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       Erysipelothrix (5)
       Faecalitalea (1)
       Turicibacter (2)
       Faecalibaculum (1)
       Absiella (2)
       Erysipelatoclostridium (1)
       unclassified Erysipelotrichaceae (2)
       Limnochorda (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Tenericutes (158)
       Mycoplasma (98)
       Ureaplasma (4)
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       Phytoplasma (8)
       Acholeplasma (6)
       Mesoplasma (8)
       Entomoplasma (4)
       Spiroplasma (26)
       Izimaplasma (1)
       unclassified Tenericutes (2)
 
 
 
 
 
 
 
 
 
 
     Actinobacteria (751)
       Mycobacterium (73)
         mtu  Mycobacterium tuberculosis H37Rv
         mtv  Mycobacterium tuberculosis H37Rv
         mtc  Mycobacterium tuberculosis CDC1551
         mra  Mycobacterium tuberculosis H37Ra
         mtf  Mycobacterium tuberculosis F11
         mtb  Mycobacterium tuberculosis KZN 1435
         mtk  Mycobacterium tuberculosis KZN 4207
         mtz  Mycobacterium tuberculosis KZN 605
         mtg  Mycobacterium tuberculosis RGTB327
         mti  Mycobacterium tuberculosis RGTB423
         mte  Mycobacterium tuberculosis CCDC5079
         mtur  Mycobacterium tuberculosis CCDC5079
         mtl  Mycobacterium tuberculosis CCDC5180
         mto  Mycobacterium tuberculosis CTRI-2
         mtd  Mycobacterium tuberculosis UT205
         mtn  Mycobacterium tuberculosis Erdman = ATCC 35801
         mtj  Mycobacterium tuberculosis Beijing/NITR203
         mtub  Mycobacterium tuberculosis 7199-99
         mtuc  Mycobacterium tuberculosis CAS/NITR204
         mtue  Mycobacterium tuberculosis EAI5/NITR206
         mtx  Mycobacterium tuberculosis EAI5
         mtuh  Mycobacterium tuberculosis Haarlem/NITR202
         mtul  Mycobacterium tuberculosis Haarlem
         mtut  Mycobacterium tuberculosis BT1
         mtuu  Mycobacterium tuberculosis BT2
         mtq  Mycobacterium tuberculosis HKBS1
         mbo  Mycobacterium tuberculosis variant bovis AF2122/97
         mbb  Mycobacterium tuberculosis variant bovis BCG Pasteur 1173P2
         mbt  Mycobacterium tuberculosis variant bovis BCG Tokyo 172
         mbm  Mycobacterium tuberculosis variant bovis BCG Mexico
         mbk  Mycobacterium tuberculosis variant bovis BCG Korea 1168P
         mbx  Mycobacterium tuberculosis variant bovis BCG ATCC 35743
         maf  Mycobacterium tuberculosis variant africanum
         mmic  Mycobacterium tuberculosis variant microti
         mce  Mycobacterium canettii CIPT 140010059
         mcq  Mycobacterium canettii CIPT 140060008
         mcv  Mycobacterium canettii CIPT 140070008
         mcx  Mycobacterium canettii CIPT 140070010
         mcz  Mycobacterium canettii CIPT 140070017
         mle  Mycobacterium leprae TN
         mlb  Mycobacterium leprae Br4923
         mpa  Mycobacterium avium subsp. paratuberculosis K-10
         mao  Mycobacterium avium subsp. paratuberculosis MAP4
         mavi  Mycobacterium avium subsp. paratuberculosis E1
         mavu  Mycobacterium avium subsp. paratuberculosis E93
         mav  Mycobacterium avium 104
         mit  Mycobacterium intracellulare MOTT-02
         mia  Mycobacterium intracellulare ATCC 13950
         mid  Mycobacterium intracellulare subsp. intracellulare
         myo  Mycobacterium intracellulare subsp. yongonense
         mir  Mycobacterium paraintracellulare
         mchi  Mycobacterium chimaera
         mmal  Mycobacterium marseillense
         mlp  Mycobacterium lepraemurium
         msa  Mycobacterium sp. JS623
         mul  Mycobacterium ulcerans
         mmc  Mycobacterium sp. MCS
         mkm  Mycobacterium sp. KMS
         mjl  Mycobacterium sp. JLS
         mmi  Mycobacterium marinum M
         mmae  Mycobacterium marinum E11
         mmm  Mycobacterium sp. MOTT36Y
         mli  Mycobacterium liflandii
         mkn  Mycobacterium kansasii ATCC 12478
         myv  Mycobacterium sp. VKM Ac-1817D
         mye  Mycobacterium sp. EPa45
         mhad  Mycobacterium haemophilum
         myn  Mycobacterium sp. NRRL B-3805
         mdx  Mycobacterium dioxanotrophicus
         mshg  Mycobacterium shigaense
         mfj  Mycobacterium florentinum
         mgro  Mycobacterium grossiae
         mxe  Mycobacterium xenopi
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       Mycolicibacterium (21)
         msm  Mycolicibacterium smegmatis MC2 155
         msg  Mycolicibacterium smegmatis MC2 155
         msb  Mycolicibacterium smegmatis MC2 155
         msn  Mycolicibacterium smegmatis INHR1
         msh  Mycolicibacterium smegmatis INHR2
         mva  Mycolicibacterium vanbaalenii
         mgi  Mycolicibacterium gilvum PYR-GCK
         msp  Mycolicibacterium gilvum Spyr1
         mcb  Mycolicibacterium chubuense
         mne  Mycolicibacterium neoaurum
         mgo  Mycolicibacterium goodii
         mft  Mycolicibacterium fortuitum
         mphl  Mycolicibacterium phlei
         mvq  Mycolicibacterium vaccae
         mll  Mycolicibacterium litorale
         mrh  Mycolicibacterium rhodesiae
         mthn  Mycolicibacterium thermoresistibile
         mhas  Mycolicibacterium hassiacum
         mdu  Mycolicibacterium duvalii
         mcht  Mycolicibacterium chitae
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       Mycobacteroides (9)
         mab  Mycobacteroides abscessus ATCC 19977
         mmv  Mycobacteroides abscessus subsp. massiliense GO 06
         mabb  Mycobacteroides abscessus subsp. bolletii 50594
         mabl  Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300
         mche  Mycobacteroides chelonae
         miz  Mycobacteroides immunogenum
         mste  Mycobacterium stephanolepidis
         msao  Mycobacteroides saopaulense
         msal  Mycobacteroides salmoniphilum
   9/15
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       Mycolicibacter (3)
         mjd  Mycolicibacter sinensis
         mter  Mycolicibacter terrae
         mmin  Mycolicibacter minnesotensis
  12/15
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       Hoyosella (1)
         asd  Hoyosella subflava
   9/15
       Mycolicibacillus (1)
         mkr  Mycolicibacillus koreensis
  11/15
       Corynebacterium (100)
         cgy  Corynebacterium glyciniphilum
         coa  Corynebacterium sp. ATCC 6931
         clw  Corynebacterium lactis
         cxe  Corynebacterium xerosis
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       Nocardia (10)
         nfa  Nocardia farcinica IFM 10152
         nfr  Nocardia farcinica NCTC11134
         ncy  Nocardia cyriacigeorgica
         nbr  Nocardia brasiliensis
         nno  Nocardia nova
         nsl  Nocardia mangyaensis
         nsr  Nocardia seriolae
         ntp  Nocardia terpenica
         noz  Nocardia sp. CS682
         nod  Nocardia otitidiscaviarum
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       Rhodococcus (21)
         rha  Rhodococcus jostii
         rer  Rhodococcus erythropolis PR4
         rey  Rhodococcus erythropolis CCM2595
         reb  Rhodococcus erythropolis BG43
         rop  Rhodococcus opacus B4
         roa  Rhodococcus opacus PD630
         req  Rhodococcus hoagii
         rpy  Rhodococcus pyridinivorans
         rhb  Rhodococcus sp. B7740
         rav  Rhodococcus aetherivorans
         rfa  Rhodococcus fascians
         rhw  Rhodococcus sp. WMMA185
         rhs  Rhodococcus sp. PBTS 2
         rrz  Rhodococcus ruber
         rhu  Rhodococcus sp. PBTS 1
         rqi  Rhodococcus qingshengii
         rhq  Rhodococcus sp. p52
         rhod  Rhodococcus sp. 008
         rrt  Rhodococcus rhodochrous
         rby  Rhodococcus biphenylivorans
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       Gordonia (11)
         gbr  Gordonia bronchialis
         gpo  Gordonia polyisoprenivorans
         gor  Gordonia sp. KTR9
         goq  Gordonia phthalatica
         gta  Gordonia terrae
         goc  Gordonia sp. YC-JH1
         git  Gordonia iterans
         gru  Gordonia rubripertincta
         gom  Gordonia insulae
         gav  Gordonia alkanivorans
         god  Gordonia sp. 135
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       Tsukamurella (2)
         tpr  Tsukamurella paurometabola
         tsm  Tsukamurella tyrosinosolvens
  10/15
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       Segniliparus (1)
         srt  Segniliparus rotundus
   3/15
       Dietzia (5)
         dtm  Dietzia timorensis
         dit  Dietzia sp. oral taxon 368
         diz  Dietzia sp. JS16-p6b
         dpc  Dietzia psychralcaliphila
         dlu  Dietzia lutea
  10/15
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       Lawsonella (1)
         cbq  Lawsonella clevelandensis
   2/15
       Tomitella (1)
         toy  Tomitella sp. HY188
  10/15
       Streptomyces (70)
         sma  Streptomyces avermitilis
         sgr  Streptomyces griseus
         sgb  Streptomyces globisporus
         scb  Streptomyces scabiei
         ssx  Streptomyces sp. SirexAA-E
         svl  Streptomyces violaceusniger
         sct  Streptomyces cattleya NRRL 8057 = DSM 46488
         scy  Streptomyces cattleya NRRL 8057 = DSM 46488
         sbh  Streptomyces bingchenggensis
         shy  Streptomyces hygroscopicus subsp. jinggangensis 5008
         sho  Streptomyces hygroscopicus subsp. jinggangensis TL01
         sve  Streptomyces venezuelae
         sdv  Streptomyces davaonensis
         sals  Streptomyces albus DSM 41398
         sfi  Streptomyces fulvissimus
         sci  Streptomyces collinus
         src  Streptomyces rapamycinicus
         salu  Streptomyces albulus NK660
         sall  Streptomyces albulus ZPM
         sgu  Streptomyces glaucescens
         svt  Streptomyces vietnamensis
         stre  Streptomyces sp. 769
         scw  Streptomyces cyaneogriseus
         sld  Streptomyces lydicus A02
         slc  Streptomyces lydicus 103
         strm  Streptomyces sp. Mg1
         strc  Streptomyces sp. CNQ-509
         spri  Streptomyces pristinaespiralis
         scz  Streptomyces sp. CFMR 7
         scx  Streptomyces sp. CdTB01
         srw  Streptomyces reticuli
         strf  Streptomyces sp. 4F
         sle  Streptomyces leeuwenhoekii
         strt  Streptomyces sp. SAT1
         sclf  Streptomyces clavuligerus
         sgs  Streptomyces griseochromogenes
         stsi  Streptomyces qaidamensis
         sls  Streptomyces lincolnensis
         snr  Streptomyces noursei
         splu  Streptomyces pluripotens
         strd  Streptomyces sp. CCM_MD2014
         snw  Streptomyces niveus
         sauo  Streptomyces autolyticus
         ssia  Streptomyces alfalfae
         svu  Streptomyces violaceoruber
         spun  Streptomyces fodineus
         sgv  Streptomyces gilvosporeus
         smal  Streptomyces malaysiensis
         slau  Streptomyces laurentii
         salf  Streptomyces alboflavus
         salj  Streptomyces albireticuli
         slx  Streptomyces lavendulae subsp. lavendulae
         stro  Streptomyces sp. MOE7
         sfk  Streptomyces formicae
         snz  Streptomyces nigra
         sge  Streptomyces griseorubiginosus
         srj  Streptomyces rochei
         slk  Streptomyces lunaelactis
         sdx  Streptomyces dengpaensis
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       Kitasatospora (4)
         kab  Kitasatospora albolonga
         kau  Kitasatospora aureofaciens
         kit  Kitasatospora sp. MMS16-BH015
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       Streptacidiphilus (1)
         stri  Streptacidiphilus sp. DSM 106435
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       Tropheryma (2)
       Luteimicrobium (1)
       Leifsonia (3)
       Clavibacter (5)
       Microbacterium (18)
       Rhodoluna (2)
       Aquiluna (1)
       Rathayibacter (7)
       Curtobacterium (4)
       Microterricola (1)
       Frondihabitans (1)
       Agromyces (3)
       Cryobacterium (2)
       Cnuibacter (1)
       Aurantimicrobium (3)
       Pontimonas (1)
       Microcella (1)
       Mycetocola (1)
       Salinibacterium (3)
         sald  Salinibacterium sp. dk2585
   2/15
       Humibacter (2)
       Gryllotalpicola (1)
       Protaetiibacter (1)
       Lysinimonas (1)
       Plantibacter (1)
       Leucobacter (3)
       Agrococcus (1)
       Marisediminicola (1)
       Herbiconiux (1)
       Arthrobacter (18)
         arl  Arthrobacter sp. LS16
         ary  Arthrobacter sp. YC-RL1
         arq  Arthrobacter sp. QXT-31
         arn  Arthrobacter sp. YN
         acry  Arthrobacter crystallopoietes
         artp  Arthrobacter sp. PAMC25564
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       Psychromicrobium (1)
       Paenarthrobacter (1)
       Pseudarthrobacter (5)
         psul  Pseudarthrobacter sulfonivorans
   4/15
       Glutamicibacter (4)
         glu  Glutamicibacter sp. ZJUTW
   2/15
       Renibacterium (1)
       Kocuria (6)
       Micrococcus (2)
       Rothia (3)
       Sinomonas (1)
       Neomicrococcus (1)
       Auritidibacter (1)
       Citricoccus (1)
       Beutenbergia (1)
       Brachybacterium (7)
       Dermabacter (2)
       Jonesia (1)
       Kytococcus (1)
       Dermacoccus (2)
         day  Dermacoccus abyssi
   2/15
       Luteipulveratus (1)
         lmoi  Luteipulveratus mongoliensis
   2/15
       Xylanimonas (2)
       Isoptericola (2)
       Cellulosimicrobium (2)
       Xylanimicrobium (1)
       Sanguibacter (2)
       Cellulomonas (7)
       Oerskovia (1)
         oek  Oerskovia sp. KBS0722
   2/15
       Pseudactinotalea (1)
       Intrasporangium (1)
         ica  Intrasporangium calvum
   2/15
       Arsenicicoccus (1)
       Serinicoccus (2)
       Janibacter (3)
         jte  Janibacter indicus
         jli  Janibacter limosus
   3/15
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       Ornithinimicrobium (2)
       Tetrasphaera (1)
         teh  Tetrasphaera sp. HKS02
   2/15
       Phycicoccus (1)
       Brevibacterium (4)
       Dermatophilus (1)
       Georgenia (1)
       Cutibacterium (14)
       Propionibacterium (5)
       Pseudopropionibacterium (1)
       Acidipropionibacterium (4)
         pbo  Acidipropionibacterium acidipropionici ATCC 4875
         aaci  Acidipropionibacterium acidipropionici CGMCC 1.2230
         acij  Acidipropionibacterium virtanenii
   2/15
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       Microlunatus (3)
         mph  Microlunatus phosphovorus
   2/15
       Tessaracoccus (4)
       Raineyella (1)
       Propioniciclava (1)
       Nocardioides (8)
         nca  Nocardioides sp. JS614
         ndk  Nocardioides dokdonensis
         noy  Nocardioides euryhalodurans
         noo  Nocardioides sp. S-1144
         ndp  Nocardioides daphniae
  10/15
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       Kribbella (1)
       Pimelobacter (1)
         psim  Pimelobacter simplex
  10/15
       Aeromicrobium (4)
         aeb  Aeromicrobium sp. A1-2
  10/15
       Micropruina (1)
       Thermobifida (1)
       Nocardiopsis (3)
         nal  Nocardiopsis alba
         ngv  Nocardiopsis gilva
   2/15
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       Streptomonospora (1)
       Thermomonospora (1)
         tcu  Thermomonospora curvata
   9/15
       Actinomadura (1)
         actw  Actinomadura sp. WMMB499
  10/15
       Streptosporangium (1)
         sro  Streptosporangium roseum
   5/15
       Nonomuraea (2)
         noa  Nonomuraea sp. ATCC 55076
         now  Nonomuraea sp. WYY166
   6/15
   3/15
       Frankia (5)
         fre  Frankia sp. EAN1pec
         fri  Frankia inefficax
         fal  Frankia alni
         fsy  Candidatus Frankia datiscae
   5/15
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   3/15
       Acidothermus (1)
       Nakamurella (2)
         nml  Nakamurella multipartita
   2/15
       Geodermatophilus (1)
       Blastococcus (1)
       Modestobacter (1)
       Kineococcus (1)
       Saccharopolyspora (3)
         sen  Saccharopolyspora erythraea
         sace  Saccharopolyspora sp. E2A
         sacg  Saccharopolyspora sp. ASAGF58
   2/15
  10/15
   3/15
       Saccharomonospora (2)
         svi  Saccharomonospora viridis
         sacc  Saccharomonospora sp. 31sw
   3/15
   3/15
       Amycolatopsis (11)
         amd  Amycolatopsis mediterranei U32
         amn  Amycolatopsis mediterranei S699
         amm  Amycolatopsis mediterranei S699
         amz  Amycolatopsis mediterranei RB
         aoi  Amycolatopsis keratiniphila
         aja  Amycolatopsis japonica
         amq  Amycolatopsis methanolica
         amyc  Amycolatopsis sp. AA4
         amyb  Amycolatopsis sp. BJA-103
         aab  Amycolatopsis albispora
         amyy  Amycolatopsis sp. YIM 10
   9/15
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       Pseudonocardia (8)
         pdx  Pseudonocardia dioxanivorans
         psea  Pseudonocardia sp. AL041005-10
         psee  Pseudonocardia sp. EC080625-04
         pseh  Pseudonocardia sp. HH130629-09
         pseq  Pseudonocardia sp. EC080610-09
         pecq  Pseudonocardia sp EC080619-01
         phh  Pseudonocardia sp. HH130630-07
         paut  Pseudonocardia autotrophica
   4/15
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       Actinosynnema (2)
         apre  Actinosynnema pretiosum
         ami  Actinosynnema mirum
   2/15
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       Saccharothrix (2)
         sesp  Saccharothrix espanaensis
         ssyi  Saccharothrix syringae
   2/15
   4/15
       Kutzneria (1)
         kal  Kutzneria albida
  10/15
       Kibdelosporangium (1)
         kphy  Kibdelosporangium phytohabitans
  10/15
       Lentzea (1)
         led  Lentzea guizhouensis
  10/15
       Actinoalloteichus (5)
         ahm  Actinoalloteichus hymeniacidonis
         ahg  Actinoalloteichus hoggarensis
   2/15
   2/15
       Alloactinosynnema (1)
         alo  Alloactinosynnema sp. L-07
  10/15
       Prauserella (1)
         pmad  Prauserella marina
  10/15
       Salinispora (2)
         stp  Salinispora tropica
         saq  Salinispora arenicola
   9/15
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       Micromonospora (6)
         mau  Micromonospora aurantiaca
         mil  Micromonospora sp. L5
         micb  Micromonospora sp. B006
         mtua  Micromonospora tulbaghiae
         mich  Micromonospora sp. HM134
         mtem  Micromonospora terminaliae
   2/15
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   2/15
       Verrucosispora (1)
         vma  Verrucosispora maris
   6/15
       Actinoplanes (5)
         ams  Actinoplanes missouriensis
         actn  Actinoplanes sp. N902-109
         afs  Actinoplanes friuliensis
  10/15
   3/15
   4/15
       Plantactinospora (3)
         plab  Plantactinospora sp. BC1
         plat  Plantactinospora sp. BB1
   2/15
   2/15
       Phytohabitans (2)
         psuu  Phytohabitans suffuscus
   4/15
       Catenulispora (1)
         cai  Catenulispora acidiphila
   5/15
       Stackebrandtia (1)
       Arcanobacterium (2)
       Mobiluncus (1)
       Trueperella (3)
       Actinotignum (2)
       Schaalia (2)
       Actinomyces (11)
       Flaviflexus (2)
       Bifidobacterium (56)
       Gardnerella (3)
       Scardovia (1)
       Parascardovia (1)
       Thermobispora (1)
         tbi  Thermobispora bispora
   2/15
       Actinopolyspora (1)
         aey  Actinopolyspora erythraea
   2/15
       Planktophila (6)
       Nanopelagicus (3)
       Epidermidibacterium (1)
         eke  Epidermidibacterium keratini
   3/15
       unclassified Actinobacteria (1)
         abai  Actinobacteria bacterium
   5/15
       Rubrobacter (3)
       Baekduia (1)
         bsol  Baekduia soli
   3/15
       Conexibacter (1)
         cwo  Conexibacter woesei
   4/15
       Acidimicrobium (1)
       Ilumatobacter (1)
         aym  Ilumatobacter coccineus
   5/15
       Cryptobacterium (1)
       Slackia (1)
       Eggerthella (2)
       Gordonibacter (1)
       Adlercreutzia (1)
       Denitrobacterium (1)
       Atopobium (1)
       Olsenella (2)
       Parolsenella (1)
       Coriobacterium (1)
       Collinsella (1)
       unclassified Coriobacteriaceae (1)
       Egibacter (1)
       Euzebya (1)
         euz  Euzebya sp. DY32-46
   3/15
     Cyanobacteria (128)
       Synechocystis (8)
       Synechococcus (23)
       Thermosynechococcus (4)
       Cyanobium (2)
       Dactylococcopsis (1)
       Chamaesiphon (1)
       Leptolyngbya (4)
       Halomicronema (1)
       Pseudanabaena (2)
       Prochlorococcus (14)
       Acaryochloris (1)
       Thermoleptolyngbya (1)
       Gloeocapsa (1)
       Geminocystis (2)
       Chondrocystis (1)
       Microcystis (4)
       Cyanobacterium (3)
       Halothece (1)
       Euhalothece (1)
       Atelocyanobacterium (1)
       Crocosphaera (2)
       Rippkaea (2)
       Gloeothece (2)
       Cyanothece (1)
       Trichodesmium (1)
       Microcoleus (1)
       Arthrospira (1)
       Planktothrix (1)
       Oxynema (1)
       Limnospira (1)
       Geitlerinema (1)
       Oscillatoria (2)
       Moorea (1)
       Crinalium (1)
         cep  Crinalium epipsammum
   4/15
       Gloeobacter (2)
       Nostoc (8)
         nop  Nostoc sp. PCC 7524
   2/15
       Trichormus (2)
       Anabaena (4)
       Cylindrospermum (1)
       Calothrix (3)
         calh  Calothrix sp. 336/3
   2/15
       Rivularia (1)
         riv  Rivularia sp. PCC 7116
   2/15
       Fischerella (1)
       Nodularia (1)
       Dolichospermum (2)
       Tolypothrix (1)
       unclassified Nostocales (1)
       Chroococcidiopsis (1)
       Pleurocapsa (1)
       Stanieria (2)
       unclassified Cyanobacteria (2)
       unclassified Melainabacteria (1)
     Chloroflexi (31)
       Dehalococcoides (12)
       Dehalogenimonas (3)
       Roseiflexus (2)
         rrs  Roseiflexus sp. RS-1
         rca  Roseiflexus castenholzii
   2/15
   2/15
       Chloroflexus (3)
         chl  Chloroflexus aurantiacus Y-400-fl
   2/15
       Herpetosiphon (1)
       Thermomicrobium (1)
         tro  Thermomicrobium roseum
   2/15
       Sphaerobacterineae (1)
       Anaerolinea (1)
       Brevefilum (1)
       Pelolinea (1)
       unclassified Anaerolineaceae (1)
       Caldilinea (1)
       Promineofilum (1)
       unclassified Ktedonobacterales (1)
         kbs  Ktedonobacterales bacterium SCAWS-G2
   2/15
       Tepidiforma (1)
     Deinococcus-Thermus (33)
       Deinococcus (16)
       Truepera (1)
       Thermus (10)
       Meiothermus (4)
       Oceanithermus (1)
       Marinithermus (1)
 
 
 
 
 
 
     Other Terrabacteria group (3)
       Chthonomonas (1)
       Fimbriimonas (1)
       Thermobaculum (1)
 
 
 
     Chlamydiae (120)
       Chlamydia (114)
       Protochlamydia (2)
       Parachlamydia (1)
         puv  Parachlamydia acanthamoebae
   3/15
       Neochlamydia (1)
       Waddlia (1)
       Simkania (1)
     Verrucomicrobia (14)
       Opitutus (1)
       Lacunisphaera (1)
       Nibricoccus (1)
       unclassified Opitutaceae (1)
       Coraliomargarita (1)
       Akkermansia (2)
       Roseimicrobium (1)
       Luteolibacter (1)
       Xiphinematobacter (1)
       Methylacidiphilum (2)
       unclassified Verrucomicrobia (2)
 
 
 
 
 
 
 
 
 
 
 
     Planctomycetes (31)
       Rhodopirellula (1)
       Pirellula (2)
       Roseimaritima (1)
       Mariniblastus (1)
       Thermogutta (1)
       Lacipirellula (1)
       Planctopirus (2)
       Rubinisphaera (1)
       Planctomyces (2)
       Fuerstia (1)
       Gimesia (2)
       Bremerella (1)
       Gemmata (3)
       Tuwongella (1)
       Limnoglobus (1)
       Isosphaera (1)
       Singulisphaera (1)
       Paludisphaera (1)
       Aquisphaera (1)
       Kuenenia (1)
       Phycisphaera (1)
       Sedimentisphaera (2)
       Limihaloglobus (1)
       Anaerohalosphaera (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Kiritimatiellaeota (1)
       Kiritimatiella (1)
 
     Lentisphaerae (1)
       unclassified Victivallales (1)
 
     Spirochaetes (86)
       Borreliella (19)
       Borrelia (11)
       Treponema (23)
       Sediminispirochaeta (1)
       Spirochaeta (4)
       Sphaerochaeta (3)
       Salinispira (1)
       Oceanispirochaeta (1)
       Leptospira (13)
         lie  Leptospira interrogans serovar Lai IPAV
         lic  Leptospira interrogans serovar Copenhageni
         lis  Leptospira interrogans serovar Linhai
         lbj  Leptospira borgpetersenii JB197
         lbl  Leptospira borgpetersenii L550
         lst  Leptospira santarosai
         laj  Leptospira tipperaryensis
         lmay  Leptospira mayottensis
         lkm  Leptospira kmetyi
         lwl  Leptospira weilii
   2/15
   2/15
   2/15
   2/15
   2/15
   2/15
   2/15
   2/15
   2/15
   2/15
       Turneriella (1)
       Brachyspira (9)
     Acidobacteria (13)
       Koribacter (1)
       Acidobacterium (1)
       Granulicella (3)
       Terriglobus (3)
       Acidisarcina (1)
       Edaphobacter (1)
       Solibacter (1)
       Chloracidobacterium (1)
       Luteitalea (1)
 
 
 
 
 
 
 
 
 
     Elusimicrobia (4)
       Elusimicrobium (1)
       Endomicrobium (2)
       Termite group 1 (1)
 
 
 
     Fusobacteria (24)
       Fusobacterium (13)
       Ilyobacter (1)
       Leptotrichia (7)
       Sebaldella (1)
       Streptobacillus (1)
       Sneathia (1)
 
 
 
 
 
 
     Synergistetes (6)
       Thermanaerovibrio (1)
       Aminobacterium (1)
       Thermovirga (1)
       Anaerobaculum (1)
       Fretibacterium (1)
       Cloacibacillus (1)
 
 
 
 
 
 
     Fibrobacteres (2)
       Fibrobacter (2)
 
     Gemmatimonadetes (3)
       Gemmatimonas (2)
       Gemmatirosa (1)
 
 
     Bacteroidetes (359)
       Bacteroides (20)
       Porphyromonas (6)
       Fermentimonas (1)
       Petrimonas (2)
       Paludibacter (1)
       Parabacteroides (2)
       Tannerella (2)
       Muribaculum (1)
       Duncaniella (1)
       Barnesiella (1)
       Proteiniphilum (1)
       Dysgonomonas (1)
       Odoribacter (1)
       Butyricimonas (1)
       Azobacteroides (1)
       Prevotella (10)
       Alloprevotella (1)
       Alistipes (6)
       Mucinivorans (1)
       unclassified Bacteroidales (1)
       Draconibacterium (2)
       Salinivirga (1)
       Alkalitalea (1)
       Labilibaculum (1)
       Salinibacter (2)
       Rhodothermus (2)
       unclassified Rhodothermaceae (1)
       Chitinophaga (4)
       Niastella (1)
       Niabella (2)
       Flavisolibacter (2)
       Arachidicoccus (4)
       Filimonas (1)
       Pseudoflavitalea (1)
       Panacibacter (1)
       Pseudobacter (1)
       Flavihumibacter (1)
       Haliscomenobacter (1)
       Saprospira (1)
       Pedobacter (7)
       Pseudopedobacter (1)
       Sphingobacterium (9)
       Solitalea (1)
       Mucilaginibacter (8)
       Anseongella (1)
       Olivibacter (1)
       unclassified Sphingobacteriaceae (1)
       Cyclobacterium (2)
       Belliella (1)
       Echinicola (3)
       Algoriphagus (1)
       Cytophaga (1)
       Dyadobacter (1)
       Spirosoma (6)
       Leadbetterella (1)
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       Emticicia (1)
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       Allopseudarcicella (1)
       Arcticibacterium (1)
       Rhodocytophaga (1)
       Flexibacter (1)
       Hymenobacter (10)
       Pontibacter (2)
       Rufibacter (3)
       Nibribacter (1)
       Marivirga (1)
       Flammeovirga (2)
       Fabibacter (1)
       unclassified Flammeovirgaceae (1)
       Amoebophilus (1)
       Cardinium (3)
       Chryseolinea (1)
       Gramella (4)
       Flavobacterium (25)
       Capnocytophaga (13)
       Robiginitalea (1)
       Zunongwangia (1)
       Croceibacter (1)
       Riemerella (6)
       Maribacter (5)
       Cellulophaga (5)
       Weeksella (1)
       Dokdonia (4)
       Lacinutrix (3)
       Zobellia (1)
       Muricauda (3)
       Aequorivita (2)
       Ornithobacterium (2)
       Psychroflexus (1)
       Nonlabens (5)
       Polaribacter (5)
       Elizabethkingia (9)
       Myroides (4)
       Chryseobacterium (15)
       Winogradskyella (2)
       Siansivirga (1)
       Algibacter (1)
       Sediminicola (1)
       Tenacibaculum (5)
         ten  Tenacibaculum sp. LPB0136
   2/15
       Lutibacter (1)
       Urechidicola (1)
       Wenyingzhuangia (1)
       Formosa (3)
       Salegentibacter (1)
       Seonamhaeicola (1)
       Arenibacter (1)
       Olleya (2)
       Flavivirga (1)
       Tamlana (1)
       Aureitalea (1)
       Spongiibacterium (1)
       Kordia (2)
       Mariniflexile (1)
       Aquimarina (3)
       Euzebyella (1)
       Cloacibacterium (1)
       Muriicola (1)
       Psychroserpens (1)
       Antarcticibacterium (2)
       Empedobacter (1)
       Oceanihabitans (1)
       Bergeyella (1)
       Marinirhabdus (1)
       Apibacter (1)
       Mesoflavibacter (1)
       unclassified Flavobacteriaceae (3)
       Sulcia (9)
       Blattabacterium (9)
       Fluviicola (2)
       Owenweeksia (1)
       Ichthyobacterium (1)
       Walczuchella (1)
       Uzinura (1)
       unclassified Bacteroidetes (1)
     Chlorobi (17)
       Chlorobaculum (3)
       Chlorobium (5)
       Pelodictyon (2)
       Prosthecochloris (4)
       Chloroherpeton (1)
       Ignavibacterium (1)
       Melioribacter (1)
 
 
 
 
 
 
 
     Balneolaeota (1)
       Cyclonatronum (1)
 
     Cloacimonetes (1)
       Cloacimonas (1)
 
     Aquificae (14)
       Aquifex (1)
       Hydrogenobaculum (3)
       Hydrogenobacter (2)
       Thermocrinis (2)
       Sulfurihydrogenibium (2)
       Persephonella (1)
       Thermosulfidibacter (1)
       Thermovibrio (1)
       Desulfurobacterium (1)
 
 
 
 
 
 
 
 
 
     Thermotogae (32)
       Thermotoga (13)
       Pseudothermotoga (3)
       Thermosipho (4)
       Fervidobacterium (3)
       Petrotoga (1)
       Marinitoga (2)
       Defluviitoga (1)
       Kosmotoga (2)
       Mesotoga (2)
       Athalassotoga (1)
 
 
 
 
 
 
 
 
 
 
     Coprothermobacterota (1)
       Coprothermobacter (1)
 
     Caldiserica (1)
       Caldisericum (1)
 
     Chrysiogenetes (1)
       Desulfurispirillum (1)
 
     Deferribacteres (5)
       Deferribacter (1)
       Denitrovibrio (1)
       Calditerrivibrio (1)
       Flexistipes (1)
       Geovibrio (1)
 
 
 
 
 
     Calditrichaeota (1)
       Caldithrix (1)
 
     Dictyoglomi (2)
       Dictyoglomus (2)
 
     Nitrospirae (9)
       Thermodesulfovibrio (1)
       Nitrospira (4)
         nmv  Nitrospira moscoviensis
   2/15
       Leptospirillum (4)
     Thermodesulfobacteria (7)
       Thermodesulfatator (1)
       Thermodesulfobacterium (3)
       Caldimicrobium (1)
       Thermosulfuriphilus (1)
       Thermosulfurimonas (1)
 
 
 
 
 
     Saccharibacteria (4)
       Saccharimonas (4)
 
     Peregrinibacteria (1)
       Peribacter (1)
 
     Bipolaricaulota (2)
       Bipolaricaulis (2)
 
     Other (4)
       Vampirococcus (1)
       Methylomirabilis (1)
       Chazhemtobacterium (1)
       Babela (1)
 
 
 
 
     unclassified Bacteria (11)
 
   Archaea (325)
     Euryarchaeota (225)
       Methanocaldococcus (6)
       Methanotorris (1)
       Methanococcus (11)
       Methanothermococcus (1)
       Methanofervidicoccus (1)
       Methanothermobacter (8)
       Methanosphaera (2)
       Methanobrevibacter (6)
       Methanobacterium (10)
       Methanothermus (1)
       Methanopyrus (1)
       Archaeoglobus (5)
       Ferroglobus (1)
       Geoglobus (2)
       Thermoplasma (2)
       Picrophilus (1)
       Ferroplasma (2)
       Cuniculiplasma (1)
       unclassified Thermoplasmatales (1)
       Methanomethylophilus (1)
       Methanomassiliicoccus (1)
       Methanoplasma (1)
       unclassified Thermoplasmata (1)
       Aciduliprofundum (2)
       Pyrococcus (8)
       Thermococcus (27)
       Palaeococcus (1)
       Methanosarcina (23)
       Methanococcoides (2)
       Methanohalophilus (2)
       Methanohalobium (1)
       Methanosalsum (1)
       Methanolobus (2)
       Methanomethylovorans (1)
       Methanosaeta (3)
       Methanospirillum (1)
       Methanocorpusculum (1)
       Methanoculleus (3)
       Methanolacinia (1)
       Methanoregula (2)
       Methanosphaerula (1)
       Methanocella (3)
       Halobacterium (4)
       Halalkalicoccus (1)
       Halodesulfurarchaeum (2)
       Halanaeroarchaeum (2)
       Salarchaeum (1)
       Halarchaeum (1)
       Haloarcula (6)
       Natronomonas (2)
       Halorhabdus (3)
       Halomicrobium (3)
       Halorientalis (1)
       Halapricum (1)
       unclassified Haloarculaceae (1)
       Haloquadratum (2)
       Haloferax (4)
       Halogeometricum (1)
       Haloplanus (4)
       Halobellus (1)
       Haloprofundus (1)
       Halorubrum (5)
       Salinigranum (1)
       Halohasta (1)
       Halolamina (1)
       Halalkaliarchaeum (1)
       unclassified Haloferacales (1)
       Haloterrigena (3)
       Natrialba (1)
       Halopiger (1)
       Natrinema (4)
       Natronobacterium (1)
       Halovivax (1)
       Natronococcus (1)
       Salinarchaeum (1)
       Halostagnicola (1)
       Halobiforma (1)
       Natronolimnobius (3)
       Natronorubrum (2)
       Natrialbaceae (1)
       unclassified Nanohaloarchaea (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Crenarchaeota (71)
       Aeropyrum (2)
       Staphylothermus (2)
       Ignicoccus (2)
       Desulfurococcus (3)
       Thermosphaera (1)
       Ignisphaera (1)
       Thermogladius (1)
       Hyperthermus (1)
       Pyrolobus (1)
       Pyrodictium (1)
       Sulfurisphaera (2)
       Saccharolobus (5)
       Sulfolobus (15)
       Metallosphaera (5)
       Acidianus (5)
       Sulfodiicoccus (1)
       Stygiolobus (1)
       Sulfuracidifex (1)
       Pyrobaculum (8)
       Caldivirga (1)
       Thermoproteus (2)
       Vulcanisaeta (2)
       Thermofilum (4)
       Acidilobus (2)
       Caldisphaera (1)
       Fervidicoccus (1)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Thaumarchaeota (18)
       Nitrosopumilus (6)
       Nitrosomarinus (1)
       Cenarchaeum (1)
       Nitrososphaera (3)
       Nitrosocosmicus (2)
       Nitrosocaldus (1)
       Caldiarchaeum (1)
       Nitrosopelagicus (1)
       Nitrosotenuis (1)
       Nitrosotalea (1)
 
 
 
 
 
 
 
 
 
 
     Korarchaeota (1)
       Korarchaeum (1)
 
     Bathyarchaeota (2)
       unclassified Bathyarchaeota (2)
 
     Geothermarchaeota (1)
       Conexivisphaera (1)
 
     Nanoarchaeota (2)
       Nanoarchaeum (1)
       Nanopusillus (1)
 
 
     Micrarchaeota (1)
       Candidatus Mancarchaeum (1)
 
     Lokiarchaeota (2)
       Lokiarchaeum (1)
       Prometheoarchaeum (1)
 
 
     unclassified Archaea (2)

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Last updated: July 10, 2020

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