KEGG Organisms

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 Eukaryotes (534)
 
   Animals (250)
     Vertebrates (146)
       Mammals (66)
         hsa  Homo sapiens (human)
         ptr  Pan troglodytes (chimpanzee)
         pps  Pan paniscus (bonobo)
         ggo  Gorilla gorilla gorilla (western lowland gorilla)
         pon  Pongo abelii (Sumatran orangutan)
         nle  Nomascus leucogenys (northern white-cheeked gibbon)
         mcc  Macaca mulatta (rhesus monkey)
         mcf  Macaca fascicularis (crab-eating macaque)
         csab  Chlorocebus sabaeus (green monkey)
         rro  Rhinopithecus roxellana (golden snub-nosed monkey)
         rbb  Rhinopithecus bieti (black snub-nosed monkey)
         cjc  Callithrix jacchus (white-tufted-ear marmoset)
         sbq  Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
         mmu  Mus musculus (mouse)
         mcal  Mus caroli (Ryukyu mouse)
         mpah  Mus pahari (shrew mouse)
         rno  Rattus norvegicus (rat)
         mun  Meriones unguiculatus (Mongolian gerbil)
         cge  Cricetulus griseus (Chinese hamster)
         ngi  Nannospalax galili (Upper Galilee mountains blind mole rat)
         hgl  Heterocephalus glaber (naked mole rat)
         ccan  Castor canadensis (American beaver)
         ocu  Oryctolagus cuniculus (rabbit)
         tup  Tupaia chinensis (Chinese tree shrew)
         cfa  Canis familiaris (dog)
         vvp  Vulpes vulpes (red fox)
         aml  Ailuropoda melanoleuca (giant panda)
         umr  Ursus maritimus (polar bear)
         uah  Ursus arctos horribilis
         oro  Odobenus rosmarus divergens (Pacific walrus)
         elk  Enhydra lutris kenyoni (northern sea otter)
         fca  Felis catus (domestic cat)
         ptg  Panthera tigris altaica (Amur tiger)
         ppad  Panthera pardus (leopard)
         aju  Acinonyx jubatus (cheetah)
         bta  Bos taurus (cow)
         bom  Bos mutus (wild yak)
         biu  Bos indicus (zebu cattle)
         bbub  Bubalus bubalis (water buffalo)
         chx  Capra hircus (goat)
         oas  Ovis aries (sheep)
         ssc  Sus scrofa (pig)
         cfr  Camelus ferus (Wild Bactrian camel)
         cdk  Camelus dromedarius (Arabian camel)
         bacu  Balaenoptera acutorostrata scammoni (minke whale)
         lve  Lipotes vexillifer (Yangtze River dolphin)
         oor  Orcinus orca (killer whale)
         dle  Delphinapterus leucas (beluga whale)
         pcad  Physeter catodon (sperm whale)
         ecb  Equus caballus (horse)
         epz  Equus przewalskii (Przewalski's horse)
         eai  Equus asinus (ass)
         myb  Myotis brandtii (Brandt's bat)
         myd  Myotis davidii
         mna  Miniopterus natalensis
         hai  Hipposideros armiger (great roundleaf bat)
         dro  Desmodus rotundus (common vampire bat)
         pale  Pteropus alecto (black flying fox)
         ray  Rousettus aegyptiacus (Egyptian rousette)
         mjv  Manis javanica (Malayan pangolin)
         lav  Loxodonta africana (African savanna elephant)
         tmu  Trichechus manatus latirostris (Florida manatee)
         mdo  Monodelphis domestica (opossum)
         shr  Sarcophilus harrisii (Tasmanian devil)
         pcw  Phascolarctos cinereus (koala)
         oaa  Ornithorhynchus anatinus (platypus)
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       Birds (24)
         gga  Gallus gallus (chicken)
         mgp  Meleagris gallopavo (turkey)
         cjo  Coturnix japonica (Japanese quail)
         nmel  Numida meleagris (helmeted guineafowl)
         apla  Anas platyrhynchos (mallard)
         acyg  Anser cygnoides domesticus (swan goose)
         tgu  Taeniopygia guttata (zebra finch)
         lsr  Lonchura striata domestica (Bengalese finch)
         scan  Serinus canaria (common canary)
         gfr  Geospiza fortis (medium ground-finch)
         fab  Ficedula albicollis (collared flycatcher)
         phi  Pseudopodoces humilis (Tibetan ground-tit)
         pmaj  Parus major (Great Tit)
         ccae  Cyanistes caeruleus (blue tit)
         ccw  Corvus cornix (hooded crow)
         etl  Empidonax traillii (willow flycatcher)
         fpg  Falco peregrinus (peregrine falcon)
         fch  Falco cherrug (Saker falcon)
         clv  Columba livia (rock pigeon)
         egz  Egretta garzetta (little egret)
         nni  Nipponia nippon (crested ibis)
         acun  Athene cunicularia (burrowing owl)
         padl  Pygoscelis adeliae (Adelie penguin)
         aam  Apteryx australis mantelli (brown kiwi)
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       Reptiles (12)
         asn  Alligator sinensis (Chinese alligator)
         amj  Alligator mississippiensis (American alligator)
         pss  Pelodiscus sinensis (Chinese soft-shelled turtle)
         cmy  Chelonia mydas (green sea turtle)
         cpic  Chrysemys picta (western painted turtle)
         acs  Anolis carolinensis (green anole)
         pvt  Pogona vitticeps (central bearded dragon)
         pbi  Python bivittatus (Burmese python)
         pmur  Protobothrops mucrosquamatus (Taiwan habu)
         tsr  Thamnophis sirtalis
         pmua  Podarcis muralis (common wall lizard)
         gja  Gekko japonicus
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       Amphibians (3)
         xla  Xenopus laevis (African clawed frog)
         xtr  Xenopus tropicalis (western clawed frog)
         npr  Nanorana parkeri
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       Fishes (39)
         dre  Danio rerio (zebrafish)
         srx  Sinocyclocheilus rhinocerous
         sanh  Sinocyclocheilus anshuiensis
         sgh  Sinocyclocheilus grahami
         ccar  Cyprinus carpio (common carp)
         ipu  Ictalurus punctatus (channel catfish)
         phyp  Pangasianodon hypophthalmus (striped catfish)
         amex  Astyanax mexicanus (Mexican tetra)
         eee  Electrophorus electricus (electric eel)
         tru  Takifugu rubripes (torafugu)
         tng  Tetraodon nigroviridis (spotted green pufferfish)
         lco  Larimichthys crocea (large yellow croaker)
         ncc  Notothenia coriiceps (black rockcod)
         mze  Maylandia zebra (zebra mbuna)
         onl  Oreochromis niloticus (Nile tilapia)
         ola  Oryzias latipes (Japanese medaka)
         xma  Xiphophorus maculatus (southern platyfish)
         xco  Xiphophorus couchianus (Monterrey platyfish)
         pret  Poecilia reticulata (guppy)
         cvg  Cyprinodon variegatus (sheepshead minnow)
         nfu  Nothobranchius furzeri (turquoise killifish)
         kmr  Kryptolebias marmoratus (mangrove rivulus)
         alim  Austrofundulus limnaeus (annual killifish)
         aoce  Amphiprion ocellaris (clown anemonefish)
         csem  Cynoglossus semilaevis (tongue sole)
         pov  Paralichthys olivaceus (Japanese flounder)
         lcf  Lates calcarifer (barramundi perch)
         sdu  Seriola dumerili (greater amberjack)
         slal  Seriola lalandi dorsalis (Yellowtail amberjack)
         hcq  Hippocampus comes (tiger tail seahorse)
         bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
         malb  Monopterus albus (swamp eel)
         sasa  Salmo salar (Atlantic salmon)
         otw  Oncorhynchus tshawytscha (Chinook salmon)
         salp  Salvelinus alpinus (Arctic char)
         els  Esox lucius (northern pike)
         sfm  Scleropages formosus (Asian bonytongue)
         pki  Paramormyrops kingsleyae
         lcm  Latimeria chalumnae (coelacanth)
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       Cartilaginous fishes (2)
         cmk  Callorhinchus milii (elephant shark)
         rtp  Rhincodon typus (whale shark)
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     Lancelets (1)
       bfo  Branchiostoma floridae (Florida lancelet)
 
     Ascidians (1)
       cin  Ciona intestinalis (sea squirt)
 
     Echinoderms (2)
       spu  Strongylocentrotus purpuratus (purple sea urchin)
       aplc  Acanthaster planci (crown-of-thorns starfish)
 
 
     Hemichordates (1)
       sko  Saccoglossus kowalevskii (acorn worm)
 
     Arthropods (72)
       Insects (65)
         dme  Drosophila melanogaster (fruit fly)
         der  Drosophila erecta
         dse  Drosophila sechellia
         dsi  Drosophila simulans
         dya  Drosophila yakuba
         dan  Drosophila ananassae
         dsr  Drosophila serrata
         dpo  Drosophila pseudoobscura pseudoobscura
         dpe  Drosophila persimilis
         dmn  Drosophila miranda
         dwi  Drosophila willistoni
         dgr  Drosophila grimshawi
         dmo  Drosophila mojavensis
         daz  Drosophila arizonae
         dnv  Drosophila navojoa
         dhe  Drosophila hydei
         dvi  Drosophila virilis
         mde  Musca domestica (house fly)
         lcq  Lucilia cuprina (Australian sheep blowfly)
         aga  Anopheles gambiae (mosquito)
         aag  Aedes aegypti (yellow fever mosquito)
         aalb  Aedes albopictus (Asian tiger mosquito)
         cqu  Culex quinquefasciatus (southern house mosquito)
         ame  Apis mellifera (honey bee)
         bim  Bombus impatiens (common eastern bumble bee)
         bter  Bombus terrestris (buff-tailed bumblebee)
         ccal  Ceratina calcarata (carpenter bee)
         obb  Osmia bicornis bicornis
         soc  Solenopsis invicta (red fire ant)
         mpha  Monomorium pharaonis (pharaoh ant)
         aec  Acromyrmex echinatior (Panamanian leafcutter ant)
         acep  Atta cephalotes (leaf cutting ant)
         pbar  Pogonomyrmex barbatus (red harvester ant)
         vem  Vollenhovia emeryi
         hst  Harpegnathos saltator (Jerdon's jumping ant)
         dqu  Dinoponera quadriceps
         cfo  Camponotus floridanus (Florida carpenter ant)
         lhu  Linepithema humile (Argentine ant)
         pgc  Pseudomyrmex gracilis
         obo  Ooceraea biroi (clonal raider ant)
         pcf  Polistes canadensis
         nvi  Nasonia vitripennis (jewel wasp)
         csol  Ceratosolen solmsi marchali
         mdl  Microplitis demolitor
         tca  Tribolium castaneum (red flour beetle)
         dpa  Dendroctonus ponderosae (mountain pine beetle)
         atd  Aethina tumida (small hive beetle)
         nvl  Nicrophorus vespilloides
         bmor  Bombyx mori (domestic silkworm)
         bman  Bombyx mandarina (wild silkworm)
         dpl  Danaus plexippus (monarch butterfly)
         pmac  Papilio machaon (common yellow swallowtail)
         prap  Pieris rapae (cabbage white)
         haw  Helicoverpa armigera (cotton bollworm)
         tnl  Trichoplusia ni (cabbage looper)
         pxy  Plutella xylostella (diamondback moth)
         api  Acyrthosiphon pisum (pea aphid)
         dnx  Diuraphis noxia (Russian wheat aphid)
         ags  Aphis gossypii (cotton aphid)
         rmd  Rhopalosiphum maidis (corn leaf aphid)
         btab  Bemisia tabaci (sweet potato whitefly)
         clec  Cimex lectularius (bed bug)
         phu  Pediculus humanus corporis (human body louse)
         zne  Zootermopsis nevadensis
         fcd  Folsomia candida
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Crustaceans (2)
         dpx  Daphnia pulex (common water flea)
         pvm  Penaeus vannamei (Pacific white shrimp)
 
 
       Mites and ticks (3)
         isc  Ixodes scapularis (black-legged tick)
         tut  Tetranychus urticae (two-spotted spider mite)
         dpte  Dermatophagoides pteronyssinus (European house dust mite)
 
 
 
       Scorpions (1)
         cscu  Centruroides sculpturatus (bark scorpion)
 
       Spiders (1)
         ptep  Parasteatoda tepidariorum (common house spider)
 
     Nematodes (6)
       cel  Caenorhabditis elegans (nematode)
       cbr  Caenorhabditis briggsae
       bmy  Brugia malayi (filaria)
       loa  Loa loa (eye worm)
       nai  Necator americanus
       tsp  Trichinella spiralis
 
 
 
 
 
 
     Annelids (1)
       hro  Helobdella robusta
 
     Mollusks (5)
       lgi  Lottia gigantea (owl limpet)
       pcan  Pomacea canaliculata (golden apple snail)
       crg  Crassostrea gigas (Pacific oyster)
       myi  Mizuhopecten yessoensis (Yesso scallop)
       obi  Octopus bimaculoides
 
 
 
 
 
     Brachiopodas (1)
       lak  Lingula anatina
 
     Flatworms (4)
       smm  Schistosoma mansoni
       shx  Schistosoma haematobium
       ovi  Opisthorchis viverrini
       egl  Echinococcus granulosus
 
 
 
 
     Cnidarians (8)
       nve  Nematostella vectensis (sea anemone)
       epa  Exaiptasia pallida
       adf  Acropora digitifera (stony coral)
       amil  Acropora millepora
       pdam  Pocillopora damicornis (lace coral)
       spis  Stylophora pistillata
       dgt  Dendronephthya gigantea (soft corals)
       hmg  Hydra vulgaris
 
 
 
 
 
 
 
 
     Placozoans (1)
       tad  Trichoplax adhaerens
 
     Poriferans (1)
       aqu  Amphimedon queenslandica (sponge)
 
 
   Plants (106)
     Eudicots (75)
       Mustard family (9)
         ath  Arabidopsis thaliana (thale cress)
         aly  Arabidopsis lyrata (lyrate rockcress)
         crb  Capsella rubella
         csat  Camelina sativa (false flax)
         eus  Eutrema salsugineum
         brp  Brassica rapa (field mustard)
         bna  Brassica napus (rape)
         boe  Brassica oleracea (wild cabbage)
         rsz  Raphanus sativus (radish)
 
 
 
 
 
 
 
 
 
       Caper family (1)
         thj  Tarenaya hassleriana (spider flower)
 
       Papaya family (1)
         cpap  Carica papaya (papaya)
 
       Rue family (2)
         cit  Citrus sinensis (Valencia orange)
         cic  Citrus clementina (mandarin orange)
 
 
       Mallow family (5)
         tcc  Theobroma cacao (cacao)
         gra  Gossypium raimondii
         ghi  Gossypium hirsutum (upland cotton)
         gab  Gossypium arboreum
         dzi  Durio zibethinus (durian)
 
 
 
 
 
       Myrtle family (1)
         egr  Eucalyptus grandis (rose gum)
 
       Pea family (13)
         gmx  Glycine max (soybean)
         gsj  Glycine soja (wild soybean)
         pvu  Phaseolus vulgaris (common bean)
         vra  Vigna radiata (mung bean)
         var  Vigna angularis (adzuki bean)
         vun  Vigna unguiculata (cowpea)
         ccaj  Cajanus cajan (pigeon pea)
         mtr  Medicago truncatula (barrel medic)
         cam  Cicer arietinum (chickpea)
         lja  Lotus japonicus
         adu  Arachis duranensis
         aip  Arachis ipaensis
         lang  Lupinus angustifolius (narrow-leaved blue lupine)
 
 
 
 
 
 
 
 
 
 
 
 
 
       Rose family (7)
         fve  Fragaria vesca (woodland strawberry)
         rcn  Rosa chinensis (China rose)
         pper  Prunus persica (peach)
         pmum  Prunus mume (Japanese apricot)
         pavi  Prunus avium (sweet cherry)
         mdm  Malus domestica (apple)
         pxb  Pyrus x bretschneideri (Chinese white pear)
 
 
 
 
 
 
 
       Buckthorn family (1)
         zju  Ziziphus jujuba (Chinese jujube)
 
       Cucumber family (6)
         csv  Cucumis sativus (cucumber)
         cmo  Cucumis melo (muskmelon)
         mcha  Momordica charantia (bitter melon)
         cmax  Cucurbita maxima (winter squash)
         cmos  Cucurbita moschata (crookneck pumpkin)
         cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
 
 
 
 
 
 
       Spurge family (4)
         rcu  Ricinus communis (castor bean)
         jcu  Jatropha curcas
         hbr  Hevea brasiliensis (rubber tree)
         mesc  Manihot esculenta (cassava)
 
 
 
 
       Willow family (2)
         pop  Populus trichocarpa (black cottonwood)
         peu  Populus euphratica (Euphrates poplar)
 
 
       Walnut family (1)
         jre  Juglans regia (English walnut)
 
       Beech family (1)
         qsu  Quercus suber (cork oak)
 
       Grape family (1)
         vvi  Vitis vinifera (wine grape)
 
       Nightshade family (8)
         sly  Solanum lycopersicum (tomato)
         spen  Solanum pennellii
         sot  Solanum tuberosum (potato)
         cann  Capsicum annuum
         nta  Nicotiana tabacum (common tobacco)
         nsy  Nicotiana sylvestris
         nto  Nicotiana tomentosiformis
         nau  Nicotiana attenuata
 
 
 
 
 
 
 
 
       Morning-glory family (1)
         ini  Ipomoea nil (Japanese morning glory)
 
       Sesame family (1)
         sind  Sesamum indicum (sesame)
 
       Olive family (1)
         oeu  Olea europaea var. sylvestris (wild olive)
 
       Daisy family (3)
         han  Helianthus annuus (common sunflower)
         lsv  Lactuca sativa (garden lettuce)
         ccav  Cynara cardunculus var. scolymus (artichoke)
 
 
 
       Parsley family (1)
         dcr  Daucus carota (carrot)
 
       Amaranth family (3)
         bvg  Beta vulgaris (sugar beet)
         soe  Spinacia oleracea (spinach)
         cqi  Chenopodium quinoa (quinoa)
 
 
 
       Lotus family (1)
         nnu  Nelumbo nucifera (sacred lotus)
 
       Poppy family (1)
         psom  Papaver somniferum (opium poppy)
 
     Monocots (14)
       Grass family (8)
         osa  Oryza sativa japonica (Japanese rice) (RefSeq)
         dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
         obr  Oryza brachyantha (malo sina)
         bdi  Brachypodium distachyon
         ats  Aegilops tauschii (wheat D)
         sbi  Sorghum bicolor (sorghum)
         zma  Zea mays (maize)
         sita  Setaria italica (foxtail millet)
 
 
 
 
 
 
 
 
       Palm family (2)
         pda  Phoenix dactylifera (date palm)
         egu  Elaeis guineensis (African oil palm)
 
 
       Banana family (1)
         mus  Musa acuminata (wild Malaysian banana)
 
       Orchid family (2)
         dct  Dendrobium catenatum
         peq  Phalaenopsis equestris
 
 
       Asparagus family (1)
         aof  Asparagus officinalis (garden asparagus)
 
     Basal Magnoliophyta (1)
       Amborella family (1)
         atr  Amborella trichopoda
 
     Ferns (1)
       smo  Selaginella moellendorffii
 
     Mosses (1)
       ppp  Physcomitrella patens subsp. patens
 
     Green algae (11)
       cre  Chlamydomonas reinhardtii
       vcn  Volvox carteri f. nagariensis
       mng  Monoraphidium neglectum
       olu  Ostreococcus lucimarinus
       ota  Ostreococcus tauri
       bpg  Bathycoccus prasinos
       mis  Micromonas commoda
       mpp  Micromonas pusilla
       csl  Coccomyxa subellipsoidea
       cvr  Chlorella variabilis
       apro  Auxenochlorella protothecoides
 
 
 
 
 
 
 
 
 
 
 
     Red algae (3)
       cme  Cyanidioschyzon merolae
       gsl  Galdieria sulphuraria
       ccp  Chondrus crispus (carragheen)
 
 
 
 
   Fungi (128)
     Ascomycetes (92)
       Saccharomycetes (32)
         sce  Saccharomyces cerevisiae (budding yeast)
         ago  Ashbya gossypii (Eremothecium gossypii)
         erc  Eremothecium cymbalariae
         kla  Kluyveromyces lactis
         kmx  Kluyveromyces marxianus
         lth  Lachancea thermotolerans
         vpo  Vanderwaltozyma polyspora
         zro  Zygosaccharomyces rouxii
         cgr  Candida glabrata
         ncs  Naumovozyma castellii
         ndi  Naumovozyma dairenensis
         tpf  Tetrapisispora phaffii
         tbl  Tetrapisispora blattae
         tdl  Torulaspora delbrueckii
         kaf  Kazachstania africana
         ppa  Komagataella phaffii
         dha  Debaryomyces hansenii
         pic  Scheffersomyces stipitis
         pgu  Meyerozyma guilliermondii
         spaa  Spathaspora passalidarum
         lel  Lodderomyces elongisporus
         cal  Candida albicans
         ctp  Candida tropicalis
         cot  Candida orthopsilosis
         cdu  Candida dubliniensis
         cten  Yamadazyma tenuis
         yli  Yarrowia lipolytica
         clu  Clavispora lusitaniae ATCC 42720
         clus  Clavispora lusitaniae CBS 6936
         caur  Candida auris
         slb  Sugiyamaella lignohabitans
         pkz  Pichia kudriavzevii
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Sordariomycetes (26)
         ncr  Neurospora crassa
         nte  Neurospora tetrasperma
         smp  Sordaria macrospora
         pan  Podospora anserina
         ttt  Thermothielavioides terrestris
         mtm  Thermothelomyces thermophilus
         cthr  Chaetomium thermophilum
         mgr  Pyricularia oryzae 70-15
         tmn  Phaeoacremonium minimum
         ssck  Sporothrix schenckii
         fgr  Fusarium graminearum
         fpu  Fusarium pseudograminearum
         fvr  Fusarium verticillioides
         fox  Fusarium oxysporum
         nhe  Nectria haematococca
         tre  Trichoderma reesei QM6a
         trr  Trichoderma reesei RUT C-30
         maw  Metarhizium acridum
         maj  Metarhizium robertsii
         cmt  Cordyceps militaris
         plj  Purpureocillium lilacinum
         val  Verticillium alfalfae
         vda  Verticillium dahliae
         cfj  Colletotrichum fioriniae
         ela  Eutypa lata
         pfy  Pestalotiopsis fici
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Leotiomycetes (5)
         ssl  Sclerotinia sclerotiorum
         bfu  Botrytis cinerea
         mbe  Marssonina brunnea
         psco  Phialocephala scopiformis
         glz  Glarea lozoyensis
 
 
 
 
 
       Eurotiomycetes (17)
         ani  Aspergillus nidulans
         afm  Aspergillus fumigatus
         aor  Aspergillus oryzae
         ang  Aspergillus niger
         afv  Aspergillus flavus
         act  Aspergillus clavatus
         nfi  Aspergillus fischeri
         pcs  Penicillium rubens
         pdp  Penicillium digitatum
         cim  Coccidioides immitis
         cpw  Coccidioides posadasii
         pbl  Paracoccidioides lutzii Pb01
         pbn  Paracoccidioides brasiliensis Pb18
         ure  Uncinocarpus reesii
         abe  Trichophyton benhamiae
         tve  Trichophyton verrucosum
         aje  Histoplasma capsulatum
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Dothideomycetes (10)
         pno  Parastagonospora nodorum
         pte  Pyrenophora teres
         bze  Bipolaris zeicola
         bsc  Bipolaris sorokiniana
         bor  Bipolaris oryzae
         aalt  Alternaria alternata
         ztr  Zymoseptoria tritici
         pfj  Pseudocercospora fijiensis
         bcom  Baudoinia panamericana
         npa  Neofusicoccum parvum
 
 
 
 
 
 
 
 
 
 
       Pezizomycetes (1)
         tml  Tuber melanosporum
 
       Schizosaccharomycetes (1)
         spo  Schizosaccharomyces pombe (fission yeast)
 
     Basidiomycetes (31)
       cne  Cryptococcus neoformans var. neoformans JEC21
       cnb  Cryptococcus neoformans var. neoformans B-3501A
       cgi  Cryptococcus gattii
       tms  Tremella mesenterica
       ppl  Postia placenta
       tvs  Trametes versicolor
       dsq  Dichomitus squalens
       pco  Phanerochaete carnosa
       shs  Stereum hirsutum
       hir  Heterobasidion irregulare
       psq  Punctularia strigosozonata
       adl  Auricularia subglabra
       fme  Fomitiporia mediterranea
       gtr  Gloeophyllum trabeum
       lbc  Laccaria bicolor
       mpr  Moniliophthora perniciosa
       mrr  Moniliophthora roreri
       cci  Coprinopsis cinerea
       scm  Schizophyllum commune
       abp  Agaricus bisporus var. burnettii JB137-S8
       abv  Agaricus bisporus var. bisporus H97
       cput  Coniophora puteana
       sla  Serpula lacrymans
       wse  Wallemia mellicola
       wic  Wallemia ichthyophaga
       uma  Ustilago maydis
       pfp  Anthracocystis flocculosa
       mgl  Malassezia globosa
       mrt  Malassezia restricta
       pgr  Puccinia graminis
       mlr  Melampsora larici-populina
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
     Microsporidians (5)
       ecu  Encephalitozoon cuniculi
       ein  Encephalitozoon intestinalis
       ehe  Encephalitozoon hellem
       ero  Encephalitozoon romaleae
       nce  Nosema ceranae
 
 
 
 
 
 
   Protists (50)
     Choanoflagellates (2)
       mbr  Monosiga brevicollis
       sre  Salpingoeca rosetta
 
 
     Amoebozoa (7)
       Dictyostelium (2)
         ddi  Dictyostelium discoideum (cellular slime mold)
         dpp  Dictyostelium purpureum (cellular slime mold)
 
 
       Cavenderia (1)
         dfa  Cavenderia fasciculata (cellular slime mold)
 
       Entamoeba (3)
         ehi  Entamoeba histolytica
         edi  Entamoeba dispar
         eiv  Entamoeba invadens
 
 
 
       Acanthamoeba (1)
         acan  Acanthamoeba castellanii
 
     Alveolates (21)
       Apicomplexans (18)
         pfa  Plasmodium falciparum 3D7
         pfd  Plasmodium falciparum Dd2
         pfh  Plasmodium falciparum HB3
         pyo  Plasmodium yoelii
         pcb  Plasmodium chabaudi
         pbe  Plasmodium berghei
         pkn  Plasmodium knowlesi
         pvx  Plasmodium vivax
         pcy  Plasmodium cynomolgi
         tan  Theileria annulata
         tpv  Theileria parva
         tot  Theileria orientalis
         beq  Theileria equi
         bbo  Babesia bovis
         bmic  Babesia microti
         cpv  Cryptosporidium parvum
         cho  Cryptosporidium hominis
         tgo  Toxoplasma gondii
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Ciliates (2)
         tet  Tetrahymena thermophila
         ptm  Paramecium tetraurelia
 
 
       Dinoflagellates (1)
         smin  Breviolum minutum
 
     Stramenopiles (8)
       Diatoms (3)
         pti  Phaeodactylum tricornutum
         fcy  Fragilariopsis cylindrus
         tps  Thalassiosira pseudonana
 
 
 
       Pelagophytes (1)
         aaf  Aureococcus anophagefferens
 
       Eustigmatophytes (1)
         ngd  Nannochloropsis gaditana
 
       Oomycetes (3)
         pif  Phytophthora infestans
         psoj  Phytophthora sojae
         spar  Saprolegnia parasitica
 
 
 
     Haptophyta (1)
       ehx  Emiliania huxleyi
 
     Cryptomonads (1)
       gtt  Guillardia theta
 
     Euglenozoa (7)
       Kinetoplasts (7)
         tbr  Trypanosoma brucei
         tcr  Trypanosoma cruzi
         lma  Leishmania major
         lif  Leishmania infantum
         ldo  Leishmania donovani
         lmi  Leishmania mexicana
         lbz  Leishmania braziliensis
 
 
 
 
 
 
 
     Heterolobosea (1)
       Amoeboflagellate (1)
         ngr  Naegleria gruberi
 
     Parabasalids (1)
       Trichomonads (1)
         tva  Trichomonas vaginalis
 
     Diplomonads (1)
       gla  Giardia lamblia
 
 
 Prokaryotes (5735)
 
   Bacteria (5428)
     Gammaproteobacteria - Enterobacteria (491)
       Escherichia (69)
         eco  Escherichia coli K-12 MG1655
         ecj  Escherichia coli K-12 W3110
         ecd  Escherichia coli K-12 DH10B
         ebw  Escherichia coli BW2952
         ecok  Escherichia coli K-12 MDS42
         ece  Escherichia coli O157:H7 EDL933 (EHEC)
         ecs  Escherichia coli O157:H7 Sakai (EHEC)
         ecf  Escherichia coli O157:H7 EC4115 (EHEC)
         etw  Escherichia coli O157:H7 TW14359 (EHEC)
         elx  Escherichia coli O157:H7 Xuzhou21 (EHEC)
         eoj  Escherichia coli O26:H11 11368 (EHEC)
         eoi  Escherichia coli O111:H- 11128 (EHEC)
         eoh  Escherichia coli O103:H2 12009 (EHEC)
         ecoo  Escherichia coli O145:H28 RM13514 (EHEC)
         ecoh  Escherichia coli O145:H28 RM13516 (EHEC)
         ecg  Escherichia coli O127:H6 E2348/69 (EPEC)
         eok  Escherichia coli O55:H7 CB9615 (EPEC)
         elr  Escherichia coli O55:H7 RM12579 (EPEC)
         eso  Escherichia coli O104:H4 2009EL-2071
         esm  Escherichia coli O104:H4 2009EL-2050
         esl  Escherichia coli O104:H4 2011C-3493
         ecw  Escherichia coli O139:H28 E24377A (ETEC)
         elh  Escherichia coli O78:H11:K80 H10407 (ETEC)
         eun  Escherichia coli UMNK88 (ETEC, porcine)
         ecc  Escherichia coli O6:K2:H1 CFT073 (UPEC)
         ecp  Escherichia coli O6:K15:H31 536 (UPEC)
         eci  Escherichia coli O18:K1:H7 UTI89 (UPEC)
         ecv  Escherichia coli APEC O1 (APEC)
         ecx  Escherichia coli O9 HS (commensal)
         ecm  Escherichia coli SMS-3-5 (environmental)
         ecy  Escherichia coli O152:H28 SE11 (commensal)
         ecr  Escherichia coli O8 IAI1 (commensal)
         ecq  Escherichia coli O81 ED1a (commensal)
         eck  Escherichia coli 55989 (EAEC)
         ect  Escherichia coli O7:K1 IAI39 (ExPEC)
         eoc  Escherichia coli O7:K1 CE10
         eum  Escherichia coli O17:K52:H18 UMN026 (ExPEC)
         ecz  Escherichia coli O45:K1:H7 S88 (ExPEC)
         elo  Escherichia coli O44:H18 042 (EAEC)
         eln  Escherichia coli O83:H1 NRG 857C (AIEC)
         ese  Escherichia coli O150:H5 SE15 (commensal)
         ecl  Escherichia coli ATCC 8739
         ebr  Escherichia coli B REL606
         ebd  Escherichia coli BL21-Gold(DE3)pLysS AG
         eko  Escherichia coli KO11FL
         ekf  Escherichia coli KO11FL
         eab  Escherichia coli ABU 83972
         edh  Escherichia coli DH1
         edj  Escherichia coli DH1
         eih  Escherichia coli O18:K1:H7 IHE3034 (ExPEC)
         ena  Escherichia coli NA114 (UPEC)
         elu  Escherichia coli UM146
         elw  Escherichia coli W
         ell  Escherichia coli W
         elc  Escherichia coli clone D i14
         eld  Escherichia coli clone D i2
         elp  Escherichia coli P12b
         ebl  Escherichia coli BL21(DE3)
         ebe  Escherichia coli BL21(DE3)
         elf  Escherichia coli LF82
         ecoa  Escherichia coli APEC O78
         ecol  Escherichia coli LY180
         ecoi  Escherichia coli PMV-1
         ecoj  Escherichia coli JJ1886
         ecos  Escherichia coli O25b:K100:H4-ST131 EC958 (UPEC)
         efe  Escherichia fergusonii
         eal  Escherichia albertii
         ema  Escherichia marmotae
         esz  Escherichia sp. E4742
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Salmonella (54)
         sty  Salmonella enterica subsp. enterica serovar Typhi CT18
         stt  Salmonella enterica subsp. enterica serovar Typhi Ty2
         sex  Salmonella enterica subsp. enterica serovar Typhi P-stx-12
         sent  Salmonella enterica subsp. enterica serovar Typhi Ty21a
         stm  Salmonella enterica subsp. enterica serovar Typhimurium LT2
         seo  Salmonella enterica subsp. enterica serovar Typhimurium 14028S
         sev  Salmonella enterica subsp. enterica serovar Typhimurium D23580
         sey  Salmonella enterica subsp. enterica serovar Typhimurium SL1344
         sem  Salmonella enterica subsp. enterica serovar Typhimurium T000240
         sej  Salmonella enterica subsp. enterica serovar Typhimurium UK-1
         seb  Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
         sef  Salmonella enterica subsp. enterica serovar Typhimurium 798
         setu  Salmonella enterica subsp. enterica serovar Typhimurium U288
         setc  Salmonella enterica subsp. enterica serovar Typhimurium var. 5- CFSAN001921
         senr  Salmonella enterica subsp. enterica serovar Typhimurium DT2
         send  Salmonella enterica subsp. enterica serovar Typhimurium DT104
         seni  Salmonella enterica subsp. enterica serovar Typhimurium 138736
         seen  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736
         spt  Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150
         sek  Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601
         spq  Salmonella enterica subsp. enterica serovar Paratyphi B
         sei  Salmonella enterica subsp. enterica serovar Paratyphi C
         sec  Salmonella enterica subsp. enterica serovar Choleraesuis
         seh  Salmonella enterica subsp. enterica serovar Heidelberg SL476
         shb  Salmonella enterica subsp. enterica serovar Heidelberg B182
         senh  Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069
         seeh  Salmonella enterica subsp. enterica serovar Heidelberg 41578
         see  Salmonella enterica subsp. enterica serovar Newport SL254
         senn  Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1
         sew  Salmonella enterica subsp. enterica serovar Schwarzengrund
         sea  Salmonella enterica subsp. enterica serovar Agona SL483
         sens  Salmonella enterica subsp. enterica serovar Agona 24249
         sed  Salmonella enterica subsp. enterica serovar Dublin
         seg  Salmonella enterica subsp. enterica serovar Gallinarum 287/91
         sel  Salmonella enterica subsp. enterica serovar Gallinarum/pullorum RKS5078
         sega  Salmonella enterica subsp. enterica serovar Gallinarum/pullorum CDC1983-67
         set  Salmonella enterica subsp. enterica serovar Enteritidis P125109
         sena  Salmonella enterica subsp. enterica serovar Enteritidis EC20090135
         seno  Salmonella enterica subsp. enterica serovar Enteritidis EC20090193
         senv  Salmonella enterica subsp. enterica serovar Enteritidis EC20090332
         senq  Salmonella enterica subsp. enterica serovar Enteritidis EC20090531
         senl  Salmonella enterica subsp. enterica serovar Enteritidis OLF-SE1-1019-1
         senj  Salmonella enterica subsp. enterica serovar Javiana
         seec  Salmonella enterica subsp. enterica serovar Cubana
         seeb  Salmonella enterica subsp. enterica serovar Bareilly
         seep  Salmonella enterica subsp. enterica serovar Pullorum
         senb  Salmonella enterica subsp. enterica serovar Bovismorbificans
         sene  Salmonella enterica subsp. enterica serovar Thompson
         senc  Salmonella enterica subsp. enterica serovar Tennessee
         ses  Salmonella enterica subsp. arizonae
         sbg  Salmonella bongori NCTC 12419
         sbz  Salmonella bongori N268-08
         sbv  Salmonella bongori serovar 48:z41:--
         salz  Salmonella sp. SSDFZ69
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Shigella (13)
         sfl  Shigella flexneri 301 (serotype 2a)
         sfx  Shigella flexneri 2457T (serotype 2a)
         sfv  Shigella flexneri 8401 (serotype 5b)
         sfe  Shigella flexneri 2002017 (serotype Fxv)
         sfn  Shigella flexneri 2003036
         sfs  Shigella flexneri Shi06HN006 (serotype Yv)
         sft  Shigella flexneri NCTC1 (serotype 2a)
         ssn  Shigella sonnei Ss046
         sbo  Shigella boydii Sb227 (serotype 4)
         sbc  Shigella boydii CDC 3083-94 (serotype 18)
         sdy  Shigella dysenteriae Sd197
         sdz  Shigella dysenteriae 1617 (serotype 1)
         shq  Shigella sp. PAMC 28760
 
 
 
 
 
 
 
 
 
 
 
 
 
       Enterobacter (29)
         ent  Enterobacter sp. 638
         enc  Enterobacter cloacae subsp. cloacae ATCC 13047
         eno  Enterobacter cloacae subsp. cloacae ENHKU01
         eclo  Enterobacter cloacae subsp. cloacae NCTC 9394
         enl  Enterobacter cloacae subsp. dissolvens SDM
         eclg  Enterobacter cloacae GGT036
         ecle  Enterobacter cloacae ECNIH2
         ecln  Enterobacter cloacae ECNIH4
         ecli  Enterobacter cloacae ECNIH5
         eclx  Enterobacter hormaechei subsp. xiangfangensis
         ecly  Enterobacter hormaechei subsp. steigerwaltii
         eclz  Enterobacter hormaechei subsp. hormaechei
         ehm  Enterobacter hormaechei CAV1176
         exf  Enterobacter hormaechei subsp. xiangfangensis
         ecla  Enterobacter hormaechei subsp. hoffmannii ECNIH3
         eclc  Enterobacter hormaechei subsp. hoffmannii ECR091
         eau  Enterobacter asburiae L1
         ekb  Enterobacter kobei
         eec  Enterobacter ludwigii EcWSU1
         elg  Enterobacter ludwigii EN-119
         ecan  Enterobacter cancerogenus
         ern  Enterobacter roggenkampii
         ecls  Enterobacter cloacae complex sp. 35734
         echg  Enterobacter chengduensis
         eas  Enterobacter soli
         enr  Enterobacter sp. R4-368
         enx  Enterobacter sp. E20
         enf  Enterobacter sp. FY-07
         ebg  Enterobacter bugandensis
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Cronobacter (11)
         esa  Cronobacter sakazakii ATCC BAA-894
         csk  Cronobacter sakazakii ES15
         csz  Cronobacter sakazakii Sp291
         csj  Cronobacter sakazakii ATCC 29544
         ccon  Cronobacter condimenti
         cdm  Cronobacter dublinensis
         csi  Cronobacter malonaticus CMCC45402
         cmj  Cronobacter malonaticus LMG 23826
         cui  Cronobacter universalis
         cmw  Cronobacter muytjensii
         ctu  Cronobacter turicensis
 
 
 
 
 
 
 
 
 
 
 
       Klebsiella (42)
         kpn  Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (serotype K52)
         kpu  Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (serotype K1)
         kpm  Klebsiella pneumoniae subsp. pneumoniae HS11286
         kpp  Klebsiella pneumoniae subsp. pneumoniae 1084 (serotype K1)
         kph  Klebsiella pneumoniae subsp. pneumoniae KPNIH24
         kpz  Klebsiella pneumoniae subsp. pneumoniae KPNIH27
         kpv  Klebsiella pneumoniae subsp. pneumoniae KPNIH29
         kpw  Klebsiella pneumoniae subsp. pneumoniae KPNIH30
         kpy  Klebsiella pneumoniae subsp. pneumoniae KPNIH31
         kpg  Klebsiella pneumoniae subsp. pneumoniae KPNIH32
         kpc  Klebsiella pneumoniae subsp. pneumoniae KPNIH10
         kpq  Klebsiella pneumoniae subsp. pneumoniae KPR0928
         kpt  Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 KPPR1
         kpe  Klebsiella pneumoniae 342
         kpo  Klebsiella pneumoniae KCTC 2242
         kpr  Klebsiella pneumoniae subsp. rhinoscleromatis SB3432
         kpj  Klebsiella pneumoniae JM45
         kpi  Klebsiella pneumoniae CG43
         kpa  Klebsiella pneumoniae 30660/NJST258_1
         kps  Klebsiella pneumoniae 30684/NJST258_2
         kpx  Klebsiella pneumoniae PMK1
         kpb  Klebsiella pneumoniae blaNDM-1
         kpne  Klebsiella pneumoniae 32192
         kpnu  Klebsiella pneumoniae 34618
         kpnk  Klebsiella pneumoniae Kp52.145
         kva  Klebsiella variicola At-22
         kpk  Klebsiella variicola KP5-1
         kvd  Klebsiella variicola DX120E
         kvq  Klebsiella variicola DSM 15968
         kox  Klebsiella michiganensis KCTC 1686
         koe  Klebsiella michiganensis E718
         koy  Klebsiella michiganensis HKOPL1
         kom  Klebsiella michiganensis M1
         kmi  Klebsiella michiganensis RC10
         kok  Klebsiella oxytoca KONIH1
         koc  Klebsiella oxytoca CAV1374
         kqu  Klebsiella quasipneumoniae
         eae  Klebsiella aerogenes KCTC 2190
         ear  Klebsiella aerogenes EA1509E
         kqv  Klebsiella quasivariicola
         kll  Klebsiella sp. LTGPAF-6F
         klw  Klebsiella huaxiensis
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Citrobacter (14)
         cko  Citrobacter koseri
         cro  Citrobacter rodentium
         cfd  Citrobacter freundii
         cbra  Citrobacter braakii
         cwe  Citrobacter werkmanii
         cyo  Citrobacter youngae
         cpot  Citrobacter portucalensis
         cama  Citrobacter amalonaticus Y19
         caf  Citrobacter amalonaticus FDAARGOS_165
         cif  Citrobacter sp. FDAARGOS_156
         cfar  Citrobacter farmeri
         cir  Citrobacter sp. CFNIH10
         cie  Citrobacter sp. CRE-46
         cpar  Citrobacter pasteurii
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Gibbsiella (1)
         gqu  Gibbsiella quercinecans
 
       Blochmannia (6)
         bfl  Candidatus Blochmannia floridanus (Camponotus floridanus)
         bpn  Candidatus Blochmannia pennsylvanicus (Camponotus pennsylvanicus)
         bva  Candidatus Blochmannia vafer (Camponotus vafer)
         bchr  Candidatus Blochmannia chromaiodes (Camponotus chromaiodes)
         ben  Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 757
         bed  Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 675
 
 
 
 
 
 
       Hamiltonella (1)
         hde  Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
 
       Unclassified aphid symbionts (2)
         sect  Secondary endosymbiont of Ctenarytaina eucalypti
         sehc  Secondary endosymbiont of Heteropsylla cubana
 
 
       Unclassified mealybug symbionts (1)
         senm  Secondary endosymbiont of Trabutina mannipara
 
       Riesia (2)
         rip  Candidatus Riesia pediculicola
         rig  Candidatus Riesia sp. GBBU
 
 
       Moranella (2)
         men  Candidatus Moranella endobia PCIT
         meo  Candidatus Moranella endobia PCVAL
 
 
       Shimwellia (1)
         ebt  Shimwellia blattae
 
       Raoultella (6)
         ror  Raoultella ornithinolytica B6
         ron  Raoultella ornithinolytica S12
         rpln  Raoultella planticola
         rao  Raoultella sp. X13
         rtg  Raoultella terrigena
         ree  Raoultella electrica
 
 
 
 
 
 
       Cedecea (4)
         cnt  Cedecea neteri SSMD04
         cem  Cedecea neteri M006
         cen  Cedecea neteri ND14a
         clap  Cedecea lapagei
 
 
 
 
       Pluralibacter (3)
         pge  Pluralibacter gergoviae
         esc  Enterobacter lignolyticus SCF1
         kle  Enterobacter lignolyticus G5
 
 
 
       Kosakonia (5)
         ksa  Kosakonia sacchari
         kor  Kosakonia oryzae
         krd  Kosakonia radicincitans
         kco  Kosakonia cowanii
         kot  Kosakonia sp. CCTCC M2018092
 
 
 
 
 
       Kluyvera (2)
         kgo  Kluyvera georgiana
         kie  Kluyvera intermedia
 
 
       Ishikawaella (1)
         icp  Candidatus Ishikawaella capsulata
 
       Leclercia (4)
         lax  Leclercia adecarboxylata
         lei  Leclercia sp. LSNIH1
         leh  Leclercia sp. LSNIH3
         lee  Leclercia sp. W17
 
 
 
 
       Lelliottia (4)
         laz  Lelliottia amnigena
         lef  Lelliottia jeotgali
         lni  Lelliottia nimipressuralis
         lew  Lelliottia sp. WB101
 
 
 
 
       Limnobaculum (1)
         lpv  Limnobaculum parvum
 
       Buttiauxella (1)
         buf  Buttiauxella sp. 3AFRM03
 
       Tachikawaea (1)
         sbw  Candidatus Tachikawaea gelatinosa
 
       Doolittlea (1)
         den  Candidatus Doolittlea endobia
 
       Hoaglandella (1)
         hed  Candidatus Hoaglandella endobia
 
       Gullanella (1)
         ged  Candidatus Gullanella endobia
 
       Mikella (1)
         cmik  Candidatus Mikella endobia
 
       Purcelliella (1)
         ppet  Candidatus Purcelliella pentastirinorum
 
       Metakosakonia (1)
         mety  Metakosakonia sp. MRY16-398
 
       Atlantibacter (1)
         ahn  Atlantibacter hermannii
 
       Izhakiella (1)
         izh  Izhakiella sp. KSNA2
 
       Unclassified Enterobacteria (4)
         ebf  Enterobacteriaceae bacterium FGI 57
         ebc  Enterobacteriaceae bacterium ENNIH2
         ebu  Enterobacteriaceae bacterium S05
         psts  Plautia stali symbiont
 
 
 
 
       Yersinia (45)
         ype  Yersinia pestis CO92 (biovar Orientalis)
         ypk  Yersinia pestis KIM10+ (biovar Mediaevalis)
         yph  Yersinia pestis Harbin 35 (biovar Medievalis)
         ypa  Yersinia pestis Antiqua (biovar Antiqua)
         ypn  Yersinia pestis Nepal516 (biovar Antiqua)
         ypm  Yersinia pestis 91001 (biovar Microtus)
         ypp  Yersinia pestis Pestoides F (biovar Antiqua)
         ypg  Yersinia pestis Angola
         ypz  Yersinia pestis Z176003
         ypt  Yersinia pestis A1122
         ypd  Yersinia pestis D106004
         ypx  Yersinia pestis D182038
         ypw  Yersinia pestis PBM19
         ypj  Yersinia pestis Harbin35
         ypv  Yersinia pestis Shasta
         ypl  Yersinia pestis El Dorado
         yps  Yersinia pseudotuberculosis IP 32953 (serotype I)
         ypo  Yersinia pseudotuberculosis IP 32953 (serotype 1)
         ypi  Yersinia pseudotuberculosis IP 31758 (serotype O:1b)
         ypy  Yersinia pseudotuberculosis YPIII (serotype O:3)
         ypb  Yersinia pseudotuberculosis PB1/+ (serotype 1B)
         ypq  Yersinia pseudotuberculosis ATCC 6904
         ypu  Yersinia pseudotuberculosis MD67
         ypr  Yersinia pseudotuberculosis EP2/+
         ypc  Yersinia pseudotuberculosis 1
         ypf  Yersinia pseudotuberculosis PA3606
         yen  Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0:8)
         yep  Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
         yey  Yersinia enterocolitica subsp. palearctica Y11 (serotype:0:3)
         yel  Yersinia enterocolitica LC20
         yew  Yersinia enterocolitica WA
         yet  Yersinia enterocolitica 2516-87
         yef  Yersinia enterocolitica FORC_002
         yee  Yersinia enterocolitica (type O:5) YE53/03
         ysi  Yersinia similis
         yal  Yersinia aldovae
         yfr  Yersinia frederiksenii
         yin  Yersinia intermedia
         ykr  Yersinia kristensenii
         yro  Yersinia rohdei
         yru  Yersinia ruckeri YRB
         yrb  Yersinia ruckeri Big Creek 74 (serotype O2)
         yak  Yersinia aleksiciae
         yma  Yersinia massiliensis
         yhi  Yersinia hibernica
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Serratia (22)
         spe  Serratia proteamaculans
         srr  Serratia plymuthica AS9
         srl  Serratia plymuthica 4Rx13
         sry  Serratia plymuthica S13
         sply  Serratia plymuthica PRI-2C
         srs  Serratia sp. AS12
         sra  Serratia sp. AS13
         ssz  Serratia symbiotica
         smaf  Serratia sp. FGI94
         smw  Serratia marcescens WW4
         smar  Serratia marcescens SM39
         smac  Serratia marcescens subsp. marcescens Db11
         slq  Serratia liquefaciens
         serf  Serratia sp. FS14
         sers  Serratia sp. SCBI
         sfw  Serratia fonticola DSM 4576
         sfg  Serratia fonticola GS2
         srz  Serratia rubidaea
         sera  Serratia sp. ATCC 39006
         serq  Serratia sp. ATCC 39006
         serm  Serratia sp. MYb239
         squ  Serratia quinivorans
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Chania (1)
         sfo  Chania multitudinisentens
 
       Rahnella (4)
         rah  Rahnella sp. Y9602
         raq  Rahnella aquatilis CIP 78.65 = ATCC 33071
         raa  Rahnella aquatilis HX2
         rox  Rahnella sp. ERMR1:05
 
 
 
 
       Fukatsuia (1)
         fsm  Candidatus Fukatsuia symbiotica
 
       Pectobacterium (11)
         eca  Pectobacterium atrosepticum SCRI1043
         patr  Pectobacterium atrosepticum JG10-08
         pato  Pectobacterium atrosepticum 21A
         pct  Pectobacterium carotovorum subsp. carotovorum PC1
         pcc  Pectobacterium carotovorum subsp. carotovorum PCC21
         pcv  Pectobacterium odoriferum
         pwa  Pectobacterium parmentieri WPP163
         ppar  Pectobacterium parmentieri RNS08.42.1A
         pec  Pectobacterium parmentieri SCC3193
         pws  Pectobacterium wasabiae
         ppoa  Pectobacterium polaris
 
 
 
 
 
 
 
 
 
 
 
       Sodalis (4)
         sgl  Sodalis glossinidius (Glossina spp.)
         sod  Sodalis praecaptivus
         pes  Candidatus Sodalis pierantonius
         seny  Sodalis endosymbiont of Henestaris halophilus
 
 
 
 
       Dickeya (11)
         dda  Dickeya paradisiaca
         ddd  Dickeya dadantii 3937
         dze  Dickeya chrysanthemi
         ddc  Dickeya zeae Ech586
         dzc  Dickeya zeae EC1
         dso  Dickeya solani IPO 2222
         ced  Dickeya fangzhongdai ND14b
         dfn  Dickeya fangzhongdai DSM 101947
         ddq  Dickeya dianthicola
         daq  Dickeya aquatica
         dic  Dickeya sp. NCPPB 569
 
 
 
 
 
 
 
 
 
 
 
       Brenneria (3)
         bgj  Brenneria goodwinii
         brb  Brenneria rubrifaciens
         bng  Brenneria nigrifluens
 
 
 
       Lonsdalea (1)
         lbq  Lonsdalea britannica
 
       Erwinia (10)
         eta  Erwinia tasmaniensis
         epy  Erwinia pyrifoliae Ep1/96
         epr  Erwinia pyrifoliae DSM 12163
         eam  Erwinia amylovora CFBP1430
         eay  Erwinia amylovora ATCC 49946
         ebi  Erwinia billingiae
         erj  Erwinia sp. Ejp617
         ege  Erwinia gerundensis
         epe  Erwinia persicina
         ehd  Candidatus Erwinia haradaeae
 
 
 
 
 
 
 
 
 
 
       Buchnera (18)
         buc  Buchnera aphidicola APS (Acyrthosiphon pisum)
         bap  Buchnera aphidicola 5A (Acyrthosiphon pisum)
         bau  Buchnera aphidicola Tuc7 (Acyrthosiphon pisum)
         baw  Buchnera aphidicola JF98 (Acyrthosiphon pisum)
         bajc  Buchnera aphidicola JF99 (Acyrthosiphon pisum)
         bua  Buchnera aphidicola LL01 (Acyrthosiphon pisum)
         bup  Buchnera aphidicola TLW03 (Acyrthosiphon pisum)
         bak  Buchnera aphidicola Ak (Acyrthosiphon kondoi)
         buh  Buchnera aphidicola Ua (Uroleucon ambrosiae)
         bapf  Buchnera aphidicola F009 (Myzus persicae)
         bapg  Buchnera aphidicola G002 (Myzus persicae)
         bapu  Buchnera aphidicola USDA (Myzus persicae)
         bapw  Buchnera aphidicola W106 (Myzus persicae)
         bas  Buchnera aphidicola Sg (Schizaphis graminum)
         bab  Buchnera aphidicola Bp (Baizongia pistaciae)
         bcc  Buchnera aphidicola BCc
         baj  Buchnera aphidicola (Cinara tujafilina)
         baph  Buchnera aphidicola (Aphis glycines)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Wigglesworthia (2)
         wbr  Wigglesworthia glossinidia brevipalpis (Glossina brevipalpis)
         wgl  Wigglesworthia glossinidia morsitans (Glossina morsitans)
 
 
       Pantoea (17)
         pam  Pantoea ananatis LMG 20103
         plf  Pantoea ananatis LMG 5342
         paj  Pantoea ananatis AJ13355
         paq  Pantoea ananatis PA13
         pva  Pantoea vagans C9-1
         pagg  Pantoea vagans FDAARGOS_160
         pao  Pantoea sp. At-9b
         kln  Pantoea rwandensis
         pant  Pantoea sp. PSNIH1
         panp  Pantoea sp. PSNIH2
         hhs  Candidatus Pantoea carbekii
         pck  Candidatus Pantoea carbekii US
         pagc  Pantoea agglomerans C410P1
         pstw  Pantoea stewartii subsp. stewartii
         palh  Pantoea alhagi
         pans  Pantoea sp. SO10
         pey  Pantoea eucalypti
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Mixta (2)
         pgz  Mixta gaviniae
         pcd  Mixta calida
 
 
       Tatumella (2)
         tci  Tatumella citrea
         tpty  Tatumella ptyseos
 
 
       Photorhabdus (4)
         plu  Photorhabdus laumondii subsp. laumondii TTO1
         plum  Photorhabdus laumondii subsp. laumondii DSPV002N
         pay  Photorhabdus asymbiotica
         ptt  Photorhabdus thracensis
 
 
 
 
       Proteus (6)
         pmr  Proteus mirabilis HI4320
         pmib  Proteus mirabilis BB2000
         pvl  Proteus mirabilis CYPV1
         pvg  Proteus vulgaris
         phau  Proteus hauseri
         prot  Proteus sp. CD3
 
 
 
 
 
 
       Xenorhabdus (7)
         xbo  Xenorhabdus bovienii SS-2004
         xbv  Xenorhabdus bovienii CS03
         xne  Xenorhabdus nematophila ATCC 19061
         xnm  Xenorhabdus nematophila AN6/1
         xdo  Xenorhabdus doucetiae
         xpo  Xenorhabdus poinarii
         xho  Xenorhabdus hominickii
 
 
 
 
 
 
 
       Providencia (8)
         psi  Providencia stuartii MRSN 2154
         psx  Providencia stuartii ATCC 33672
         psta  Providencia stuartii BE2467
         prg  Providencia rettgeri
         pala  Providencia alcalifaciens
         phei  Providencia heimbachae
         prq  Providencia sp. WCHPHu000369
         prj  Providencia rustigianii
 
 
 
 
 
 
 
 
       Morganella (1)
         mmk  Morganella morganii
 
       Arsenophonus (3)
         asy  Candidatus Arsenophonus lipoptenae
         aen  Arsenophonus endosymbiont of Aleurodicus dispersus
         ans  Arsenophonus nasoniae
 
 
 
       Edwardsiella (8)
         eic  Edwardsiella ictaluri
         etr  Edwardsiella tarda EIB202
         etd  Edwardsiella tarda FL6-60
         ete  Edwardsiella anguillarum
         etc  Edwardsiella piscicida C07-087
         edw  Edwardsiella sp. EA181011
         edl  Edwardsiella sp. LADL05-105
         eho  Edwardsiella hoshinae
 
 
 
 
 
 
 
 
       Hafnia (2)
         hav  Hafnia alvei
         hpar  Hafnia paralvei
 
 
       Obesumbacterium (1)
         opo  Obesumbacterium proteus
 
       Pragia (2)
         pfq  Pragia fontium
         prag  Pragia sp. CF-458
 
 
       Leminorella (1)
         lri  Leminorella richardii
 
       Phytobacter (1)
         kin  Phytobacter ursingii
 
       Plesiomonas (1)
         pshi  Plesiomonas shigelloides
 
     Gammaproteobacteria - Others (789)
       Haemophilus (20)
         hin  Haemophilus influenzae Rd KW20 (serotype d)
         hit  Haemophilus influenzae 86-028NP (nontypeable)
         hip  Haemophilus influenzae PittEE (nontypeable)
         hiq  Haemophilus influenzae PittGG (nontypeable)
         hif  Haemophilus influenzae F3031 (nontypeable)
         hil  Haemophilus influenzae F3047 (nontypeable)
         hiu  Haemophilus influenzae 10810 (serotype b)
         hie  Haemophilus influenzae R2846 (nontypeable)
         hiz  Haemophilus influenzae R2866 (nontypeable)
         hik  Haemophilus influenzae KR494 (serotype f)
         hia  Haemophilus influenzae CGSHiCZ412602
         hih  Haemophilus influenzae Hi375
         hiw  Haemophilus influenzae 477
         hic  Haemophilus influenzae C486
         hix  Haemophilus influenzae 723
         hpr  Haemophilus parainfluenzae
         hdu  Haemophilus ducreyi
         hay  Haemophilus sp. oral taxon 036
         hpit  Haemophilus pittmaniae
         hhz  Haemophilus haemolyticus
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Glaesserella (5)
         hap  Glaesserella parasuis SH0165
         hpaz  Glaesserella parasuis ZJ0906
         hpas  Glaesserella parasuis SH03
         hpak  Glaesserella parasuis KL0318
         gle  Glaesserella sp. 15-184
 
 
 
 
 
       Histophilus (2)
         hso  Histophilus somni 129PT
         hsm  Histophilus somni 2336
 
 
       Pasteurella (7)
         pmu  Pasteurella multocida subsp. multocida Pm70
         pmv  Pasteurella multocida subsp. multocida HN06
         pul  Pasteurella multocida subsp. multocida 3480
         pmp  Pasteurella multocida 36950
         pmul  Pasteurella multocida ATCC 43137
         pdag  Pasteurella dagmatis
         paet  Pasteurella aerogenes
 
 
 
 
 
 
 
       Basfia (1)
         msu  Mannheimia succiniciproducens
 
       Mannheimia (14)
         mht  Mannheimia haemolytica USDA-ARS-USMARC-185
         mhq  Mannheimia haemolytica USDA-ARS-USMARC-183
         mhat  Mannheimia haemolytica USDA-ARS-USMARC-184
         mhx  Mannheimia haemolytica M42548
         mhae  Mannheimia haemolytica D153
         mham  Mannheimia haemolytica D171
         mhao  Mannheimia haemolytica D174
         mhal  Mannheimia haemolytica USMARC_2286
         mhaq  Mannheimia haemolytica 89010807N
         mhay  Mannheimia haemolytica 89010807N lktA-
         mvr  Mannheimia sp. USDA-ARS-USMARC-1261
         mvi  Mannheimia varigena USDA-ARS-USMARC-1296
         mvg  Mannheimia varigena USDA-ARS-USMARC-1312
         mve  Mannheimia varigena USDA-ARS-USMARC-1388
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Actinobacillus (9)
         apl  Actinobacillus pleuropneumoniae L20 (serotype 5b)
         apj  Actinobacillus pleuropneumoniae JL03 (serotype 3)
         apa  Actinobacillus pleuropneumoniae AP76 (serotype 7)
         asu  Actinobacillus succinogenes
         asi  Actinobacillus suis H91-0380
         ass  Actinobacillus suis ATCC 33415
         aeu  Actinobacillus equuli
         apor  Actinobacillus porcitonsillarum
         aio  Actinobacillus indolicus
 
 
 
 
 
 
 
 
 
       Aggregatibacter (9)
         aap  Aggregatibacter aphrophilus NJ8700
         aaz  Aggregatibacter aphrophilus W10433
         aat  Aggregatibacter actinomycetemcomitans D11S-1
         aao  Aggregatibacter actinomycetemcomitans ANH9381
         aan  Aggregatibacter actinomycetemcomitans D7S-1
         aah  Aggregatibacter actinomycetemcomitans HK1651
         aacn  Aggregatibacter actinomycetemcomitans NUM4039
         aact  Aggregatibacter actinomycetemcomitans 624
         aseg  Aggregatibacter segnis
 
 
 
 
 
 
 
 
 
       Gallibacterium (1)
         gan  Gallibacterium anatis
 
       Bibersteinia (4)
         bto  Bibersteinia trehalosi USDA-ARS-USMARC-192
         btre  Bibersteinia trehalosi USDA-ARS-USMARC-188
         btrh  Bibersteinia trehalosi USDA-ARS-USMARC-189
         btra  Bibersteinia trehalosi USDA-ARS-USMARC-190
 
 
 
 
       Avibacterium (1)
         apag  Avibacterium paragallinarum
 
       Rodentibacter (1)
         rpne  Rodentibacter pneumotropicus
 
       Otariodibacter (1)
         ooi  Otariodibacter oris
 
       Xylella (9)
         xfa  Xylella fastidiosa 9a5c
         xft  Xylella fastidiosa Temecula1
         xfm  Xylella fastidiosa M12
         xfn  Xylella fastidiosa M23
         xff  Xylella fastidiosa subsp. fastidiosa GB514
         xfl  Xylella fastidiosa MUL0034
         xfs  Xylella fastidiosa subsp. sandyi Ann-1
         xfh  Xylella fastidiosa Hib4
         xtw  Xylella taiwanensis
 
 
 
 
 
 
 
 
 
       Xanthomonas (36)
         xcc  Xanthomonas campestris pv. campestris ATCC 33913
         xcb  Xanthomonas campestris pv. campestris 8004
         xca  Xanthomonas campestris pv. campestris B100
         xcp  Xanthomonas campestris pv. raphani
         xcv  Xanthomonas campestris pv. vesicatoria
         xax  Xanthomonas axonopodis pv. citrumelo F1
         xac  Xanthomonas citri pv. citri 306
         xci  Xanthomonas citri subsp. citri Aw12879
         xct  Xanthomonas citri subsp. citri A306
         xcj  Xanthomonas citri subsp. citri UI6
         xcu  Xanthomonas citri pv. citri UI7
         xcn  Xanthomonas citri pv. citri NT17
         xcw  Xanthomonas citri pv. citri MN10
         xcr  Xanthomonas citri pv. citri MN11
         xcm  Xanthomonas citri pv. citri MN12
         xcf  Xanthomonas citri pv. citri mf20
         xfu  Xanthomonas citri pv. fuscans
         xao  Xanthomonas axonopodis Xac29-1
         xoo  Xanthomonas oryzae pv. oryzae KACC 10331
         xom  Xanthomonas oryzae pv. oryzae MAFF 311018
         xop  Xanthomonas oryzae pv. oryzae PXO99A
         xoy  Xanthomonas oryzae pv. oryzae PXO86
         xor  Xanthomonas oryzae pv. oryzicola BLS256
         xoz  Xanthomonas oryzae pv. oryzicola CFBP7342
         xal  Xanthomonas albilineans
         xsa  Xanthomonas sacchari
         xtn  Xanthomonas translucens
         xfr  Xanthomonas fragariae
         xga  Xanthomonas gardneri
         xve  Xanthomonas vesicatoria
         xpe  Xanthomonas perforans
         xhr  Xanthomonas hortorum
         xph  Xanthomonas phaseoli
         xva  Xanthomonas vasicola
         xan  Xanthomonas sp. ISO98C4
         xar  Xanthomonas arboricola
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Stenotrophomonas (11)
         sml  Stenotrophomonas maltophilia K279a
         smt  Stenotrophomonas maltophilia R551-3
         buj  Stenotrophomonas maltophilia JV3
         smz  Stenotrophomonas maltophilia D457
         sacz  Stenotrophomonas acidaminiphila
         stek  Stenotrophomonas sp. KCTC 12332
         srh  Stenotrophomonas rhizophila
         slm  Stenotrophomonas sp. LM091
         sten  Stenotrophomonas sp. WZN-1
         stem  Stenotrophomonas sp. MYb57
         stes  Stenotrophomonas sp. ASS1
 
 
 
 
 
 
 
 
 
 
 
       Pseudoxanthomonas (3)
         psu  Pseudoxanthomonas suwonensis 11-1
         psuw  Pseudoxanthomonas suwonensis J1
         psd  Pseudoxanthomonas spadix
 
 
 
       Lysobacter (9)
         lab  Lysobacter antibioticus 76
         laq  Lysobacter antibioticus ATCC 29479
         lcp  Lysobacter capsici
         lgu  Lysobacter gummosus
         lez  Lysobacter enzymogenes C3
         lem  Lysobacter enzymogenes M497-1
         lmb  Lysobacter maris
         lyt  Lysobacter sp. TY2-98
         lyj  Lysobacter sp. SJ-36
 
 
 
 
 
 
 
 
 
       Luteimonas (4)
         lum  Luteimonas sp. 100111
         lue  Luteimonas sp. 83-4
         lus  Luteimonas sp. S-1072
         lug  Luteimonas sp. Gr-4
 
 
 
 
       Thermomonas (1)
         thes  Thermomonas sp. SY21
 
       Unclassified Xanthomonadaceae (1)
         xbc  Xanthomonadaceae bacterium AQ6-296
 
       Frateuria (1)
         fau  Frateuria aurantia
 
       Rhodanobacter (2)
         rhd  Rhodanobacter denitrificans
         rgl  Rhodanobacter glycinis
 
 
       Dyella (4)
         dji  Dyella jiangningensis
         dja  Dyella japonica
         dtx  Dyella thiooxydans
         dye  Dyella sp. M7H15-1
 
 
 
 
       Dokdonella (1)
         dko  Dokdonella koreensis
 
       Luteibacter (2)
         lrz  Luteibacter rhizovicinus DSM 16549
         lpy  Luteibacter pinisoli
 
 
       Ahniella (1)
         xba  Ahniella affigens
 
       Unclassified Rhodanobacteraceae (1)
         rbd  Rhodanobacteraceae bacterium Dysh456
 
       Vibrio (51)
         vch  Vibrio cholerae O1 El Tor N16961
         vcf  Vibrio cholerae O1 El Tor FJ147
         vcs  Vibrio cholerae O1 El Tor MS6
         vce  Vibrio cholerae O1 2010EL-1786
         vcq  Vibrio cholerae O1 2012EL-2176
         vcj  Vibrio cholerae O1 MJ-1236
         vci  Vibrio cholerae O1 IEC224
         vco  Vibrio cholerae O1 O395
         vcr  Vibrio cholerae O1 O395
         vcm  Vibrio cholerae O1 M66-2
         vcl  Vibrio cholerae O1 LMA3984-4
         vcx  Vibrio cholerae O49 1154-74
         vcz  Vibrio cholerae O27 10432-62
         vvu  Vibrio vulnificus CMCP6
         vvy  Vibrio vulnificus YJ016
         vvm  Vibrio vulnificus MO6-24/O
         vvl  Vibrio vulnificus 93U204
         vpa  Vibrio parahaemolyticus RIMD 2210633
         vpb  Vibrio parahaemolyticus BB22OP
         vpk  Vibrio parahaemolyticus O1:K33 CDC_K4557
         vpf  Vibrio parahaemolyticus O1:Kuk FDA_R31
         vph  Vibrio parahaemolyticus UCM-V493
         vha  Vibrio campbellii
         vca  Vibrio campbellii
         vag  Vibrio alginolyticus
         vex  Vibrio antiquarius
         vdb  Vibrio diabolicus
         vhr  Vibrio harveyi
         vna  Vibrio natriegens
         vow  Vibrio owensii
         vro  Vibrio rotiferianus
         vsp  Vibrio tasmaniensis
         vej  Vibrio sp. EJY3
         vfu  Vibrio furnissii
         vni  Vibrio nigripulchritudo
         van  Vibrio anguillarum 775
         lag  Vibrio anguillarum M3
         vau  Vibrio anguillarum NB10
         vcy  Vibrio coralliilyticus RE98
         vct  Vibrio coralliilyticus OCN014
         vtu  Vibrio tubiashii
         vfl  Vibrio fluvialis
         vmi  Vibrio mimicus
         vbr  Vibrio breoganii
         vsc  Vibrio scophthalmi
         vga  Vibrio gazogenes
         vsh  Vibrio mediterranei
         vqi  Vibrio qinghaiensis
         vta  Vibrio tapetis
         vaf  Vibrio alfacsensis
         vnl  Vibrio neocaledonicus
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Aliivibrio (4)
         vfi  Aliivibrio fischeri ES114
         vfm  Aliivibrio fischeri MJ11
         vsa  Aliivibrio salmonicida
         awd  Aliivibrio wodanis
 
 
 
 
       Photobacterium (3)
         ppr  Photobacterium profundum
         pgb  Photobacterium gaetbulicola
         pds  Photobacterium damselae subsp. damselae
 
 
 
       Grimontia (1)
         gho  Grimontia hollisae
 
       Paraphotobacterium (1)
         pmai  Paraphotobacterium marinum
 
       Salinivibrio (2)
         saly  Salinivibrio sp. YCSC6
         sks  Salinivibrio kushneri
 
 
       Pseudomonas (111)
         pae  Pseudomonas aeruginosa PAO1
         paev  Pseudomonas aeruginosa PAO1-VE13
         paei  Pseudomonas aeruginosa PAO1-VE2
         pau  Pseudomonas aeruginosa UCBPP-PA14
         pap  Pseudomonas aeruginosa PA7
         pag  Pseudomonas aeruginosa LESB58
         paf  Pseudomonas aeruginosa M18
         pnc  Pseudomonas aeruginosa NCGM2.S1
         paeb  Pseudomonas aeruginosa NCGM 1900
         pdk  Pseudomonas aeruginosa DK2
         psg  Pseudomonas aeruginosa B136-33
         prp  Pseudomonas aeruginosa RP73
         paep  Pseudomonas aeruginosa PA1
         paer  Pseudomonas aeruginosa PA1R
         paem  Pseudomonas aeruginosa MTB-1
         pael  Pseudomonas aeruginosa LES431
         paes  Pseudomonas aeruginosa SCV20265
         paeu  Pseudomonas aeruginosa PA38182
         paeg  Pseudomonas aeruginosa YL84
         paec  Pseudomonas aeruginosa c7447m
         paeo  Pseudomonas aeruginosa PAO581
         pmy  Pseudomonas mendocina ymp
         pmk  Pseudomonas mendocina NK-01
         pre  Pseudomonas resinovorans
         ppse  Pseudomonas pseudoalcaligenes
         palc  Pseudomonas alcaligenes
         pcq  Pseudomonas citronellolis
         ppu  Pseudomonas putida KT2440
         ppf  Pseudomonas putida F1
         ppg  Pseudomonas putida GB-1
         ppw  Pseudomonas putida W619
         ppt  Pseudomonas putida S16
         ppb  Pseudomonas putida BIRD-1
         ppi  Pseudomonas putida ND6
         ppx  Pseudomonas putida DOT-T1E
         ppuh  Pseudomonas putida HB3267
         pput  Pseudomonas putida H8234
         ppun  Pseudomonas putida NBRC 14164
         ppud  Pseudomonas putida DLL-E4
         pfv  Pseudomonas fulva
         pmon  Pseudomonas monteilii SB3078
         pmot  Pseudomonas monteilii SB3101
         pmos  Pseudomonas soli
         ppj  Pseudomonas plecoglossicida
         por  Pseudomonas oryzihabitans
         pst  Pseudomonas syringae pv. tomato DC3000
         psb  Pseudomonas syringae pv. syringae B728a
         psyr  Pseudomonas syringae CC1557
         psp  Pseudomonas savastanoi pv. phaseolicola 1448A
         pamg  Pseudomonas amygdali
         pci  Pseudomonas cichorii
         pavl  Pseudomonas avellanae
         pfl  Pseudomonas protegens Pf-5
         pprc  Pseudomonas protegens CHA0
         ppro  Pseudomonas protegens Cab57
         pfo  Pseudomonas fluorescens Pf0-1
         pfs  Pseudomonas fluorescens SBW25
         pfe  Pseudomonas fluorescens F113
         pfc  Pseudomonas fluorescens A506
         pfn  Pseudomonas fluorescens UK4
         ppz  Pseudomonas poae
         pfb  Pseudomonas synxantha LBUM223
         pman  Pseudomonas mandelii
         ptv  Pseudomonas trivialis
         pcg  Pseudomonas corrugata
         pvr  Pseudomonas veronii
         pazo  Pseudomonas azotoformans
         poi  Pseudomonas orientalis
         pfw  Pseudomonas simiae PCL1751
         pff  Pseudomonas simiae PICF7
         pfx  Pseudomonas lurida
         pen  Pseudomonas entomophila
         psa  Pseudomonas stutzeri A1501
         psz  Pseudomonas stutzeri ATCC 17588
         psr  Pseudomonas stutzeri DSM 4166
         psc  Pseudomonas stutzeri CCUG 29243
         psj  Pseudomonas stutzeri DSM 10701
         psh  Pseudomonas stutzeri RCH2
         pstu  Pseudomonas stutzeri 19SMN4
         pstt  Pseudomonas stutzeri 28a24
         pbm  Pseudomonas balearica
         pba  Pseudomonas brassicacearum subsp. brassicacearum NFM421
         pbc  Pseudomonas brassicacearum DF41
         ppuu  Pseudomonas sp. UW4
         pdr  Pseudomonas sp. ATCC 13867
         psv  Pseudomonas sp. VLB120
         psk  Pseudomonas sp. TKP
         pkc  Pseudomonas knackmussii
         pch  Pseudomonas chlororaphis PA23
         pcz  Pseudomonas chlororaphis PCL1606
         pcp  Pseudomonas chlororaphis subsp. aurantiaca
         pfz  Pseudomonas fragi
         plq  Pseudomonas lundensis
         palk  Pseudomonas alkylphenolica
         prh  Pseudomonas rhizosphaerae
         psw  Pseudomonas cremoricolorata
         ppv  Pseudomonas parafulva
         pses  Pseudomonas sp. StFLB209
         psem  Pseudomonas sp. MRSN12121
         psec  Pseudomonas sp. CCOS 191
         ppsy  Pseudomonas versuta
         psos  Pseudomonas sp. Os17
         pkr  Pseudomonas koreensis
         pfk  Pseudomonas frederiksbergensis
         panr  Pseudomonas antarctica
         ppsl  Pseudomonas psychrotolerans
         pset  Pseudomonas sp. TCU-HL1
         psil  Pseudomonas silesiensis
         pym  Pseudomonas yamanorum
         pade  Candidatus Pseudomonas adelgestsugas (Adelges tsugae)
         psed  Pseudomonas sp. R2A2
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Azotobacter (4)
         avn  Azotobacter vinelandii DJ
         avl  Azotobacter vinelandii CA
         avd  Azotobacter vinelandii CA6
         acx  Azotobacter chroococcum
 
 
 
 
       Oblitimonas (1)
         pbb  Oblitimonas alkaliphila
 
       Psychrobacter (12)
         par  Psychrobacter arcticus
         pcr  Psychrobacter cryohalolentis
         prw  Psychrobacter sp. PRwf-1
         pso  Psychrobacter sp. G
         pur  Psychrobacter urativorans
         pali  Psychrobacter alimentarius
         pspg  Psychrobacter sp. P2G3
         psyg  Psychrobacter sp. P11G5
         psyc  Psychrobacter sp. DAB_AL43B
         psya  Psychrobacter sp. AntiMn-1
         psyy  Psychrobacter sp. YP14
         psyp  Psychrobacter sp. PAMC27889
 
 
 
 
 
 
 
 
 
 
 
 
       Acinetobacter (44)
         acb  Acinetobacter baumannii ATCC 17978
         abm  Acinetobacter baumannii SDF
         aby  Acinetobacter baumannii AYE
         abc  Acinetobacter baumannii ACICU
         abn  Acinetobacter baumannii AB0057
         abb  Acinetobacter baumannii AB307-0294
         abx  Acinetobacter baumannii 1656-2
         abz  Acinetobacter baumannii MDR-ZJ06
         abr  Acinetobacter baumannii MDR-TJ
         abd  Acinetobacter baumannii TCDC-AB0715
         abh  Acinetobacter baumannii TYTH-1
         abad  Acinetobacter baumannii D1279779
         abj  Acinetobacter baumannii BJAB07104
         abab  Acinetobacter baumannii BJAB0715
         abaj  Acinetobacter baumannii BJAB0868
         abaz  Acinetobacter baumannii ZW85-1
         abk  Acinetobacter baumannii AbH12O-A2
         abau  Acinetobacter baumannii AB030
         abaa  Acinetobacter baumannii AB031
         abw  Acinetobacter baumannii AC29
         abal  Acinetobacter baumannii LAC-4
         acc  Acinetobacter pittii
         ano  Acinetobacter nosocomialis
         alc  Acinetobacter lactucae
         acal  Acinetobacter calcoaceticus
         acd  Acinetobacter oleivorans
         aci  Acinetobacter baylyi
         att  Acinetobacter sp. TTH0-4
         aei  Acinetobacter equi
         ajo  Acinetobacter johnsonii
         acw  Acinetobacter sp. DUT-2
         acv  Acinetobacter sp. TGL-Y2
         ahl  Acinetobacter haemolyticus
         ajn  Acinetobacter junii
         asol  Acinetobacter soli
         ala  Acinetobacter larvae
         asj  Acinetobacter schindleri
         aid  Acinetobacter indicus
         adv  Acinetobacter defluvii
         arj  Acinetobacter radioresistens
         awu  Acinetobacter wuhouensis
         acum  Acinetobacter cumulans
         agu  Acinetobacter guillouiae
         aug  Acinetobacter ursingii
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Moraxella (7)
         mct  Moraxella catarrhalis BBH18
         mcs  Moraxella catarrhalis 25240
         mcat  Moraxella catarrhalis 25239
         moi  Moraxella ovis
         mos  Moraxella osloensis
         mbl  Moraxella bovoculi
         mboi  Moraxella bovis
 
 
 
 
 
 
 
       Unclassified Moraxellaceae (1)
         mbah  Moraxellaceae bacterium HYN0046
 
       Shewanella (32)
         son  Shewanella oneidensis
         sdn  Shewanella denitrificans
         sfr  Shewanella frigidimarina
         saz  Shewanella amazonensis
         sbl  Shewanella baltica OS155
         sbm  Shewanella baltica OS185
         sbn  Shewanella baltica OS195
         sbp  Shewanella baltica OS223
         sbt  Shewanella baltica OS678
         sbs  Shewanella baltica OS117
         sbb  Shewanella baltica BA175
         slo  Shewanella loihica
         spc  Shewanella putrefaciens CN-32
         shp  Shewanella putrefaciens 200
         sse  Shewanella sediminis
         spl  Shewanella pealeana
         she  Shewanella sp. MR-4
         shm  Shewanella sp. MR-7
         shn  Shewanella sp. ANA-3
         shw  Shewanella sp. W3-18-1
         shl  Shewanella halifaxensis
         swd  Shewanella woodyi
         swp  Shewanella piezotolerans
         svo  Shewanella violacea
         shf  Shewanella sp. FDAARGOS_354
         sja  Shewanella japonica
         spsw  Shewanella psychrophila
         sbj  Shewanella bicestrii
         smav  Shewanella marisflavi
         shew  Shewanella sp. WE21
         salg  Shewanella algae
         slj  Shewanella livingstonensis
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Idiomarina (5)
         ilo  Idiomarina loihiensis L2TR
         ili  Idiomarina loihiensis GSL 199
         ipi  Idiomarina piscisalsi
         idi  Idiomarina sp. X4
         idt  Idiomarina sp. OT37-5b
 
 
 
 
 
       Colwellia (7)
         cps  Colwellia psychrerythraea
         com  Colwellia sp. MT41
         coz  Colwellia sp. PAMC 20917
         colw  Colwellia sp. PAMC 21821
         cola  Colwellia sp. Arc7-D
         cber  Colwellia beringensis
         cov  Colwellia sp. Arc7-635
 
 
 
 
 
 
 
       Litorilituus (1)
         lsd  Litorilituus sediminis
 
       Thalassotalea (2)
         tht  Thalassotalea sp. HSM 43
         thap  Thalassotalea sp. PS06
 
 
       Pseudoalteromonas (21)
         pha  Pseudoalteromonas haloplanktis
         pat  Pseudoalteromonas atlantica
         psm  Pseudoalteromonas sp. SM9913
         pseo  Pseudoalteromonas piratica OCN003
         pia  Pseudoalteromonas issachenkonii
         pphe  Pseudoalteromonas phenolica
         pbw  Pseudoalteromonas sp. Bsw20308
         prr  Pseudoalteromonas rubra
         ptn  Pseudoalteromonas translucida
         plz  Pseudoalteromonas luteoviolacea
         paln  Pseudoalteromonas aliena
         ppis  Pseudoalteromonas piscicida
         pea  Pseudoalteromonas espejiana
         pspo  Pseudoalteromonas spongiae
         part  Pseudoalteromonas arctica
         ptu  Pseudoalteromonas tunicata
         png  Pseudoalteromonas nigrifaciens
         ptd  Pseudoalteromonas tetraodonis
         psen  Pseudoalteromonas sp. NC201
         pdj  Pseudoalteromonas donghaensis
         paga  Pseudoalteromonas agarivorans
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Marinobacter (12)
         maq  Marinobacter hydrocarbonoclasticus VT8
         mhc  Marinobacter hydrocarbonoclasticus ATCC 49840
         mad  Marinobacter adhaerens
         mbs  Marinobacter sp. BSs20148
         msr  Marinobacter salarius
         msx  Marinobacter similis
         mpq  Marinobacter psychrophilus
         mari  Marinobacter sp. CP1
         mlq  Marinobacter sp. LQ44
         msq  Marinobacter salinus
         mara  Marinobacter sp. Arc7-DN-1
         marj  Marinobacter sp. JH2
 
 
 
 
 
 
 
 
 
 
 
 
       Alteromonas (22)
         amc  Alteromonas mediterranea DE
         amh  Alteromonas mediterranea 615
         amaa  Alteromonas mediterranea DE1
         amal  Alteromonas mediterranea U4
         amae  Alteromonas mediterranea U7
         amao  Alteromonas mediterranea U8
         amad  Alteromonas mediterranea UM4b
         amai  Alteromonas mediterranea UM7
         amag  Alteromonas mediterranea MED64
         amac  Alteromonas macleodii ATCC 27126
         amb  Alteromonas macleodii Balearic Sea AD45
         amg  Alteromonas macleodii English Channel 673
         amk  Alteromonas macleodii Black Sea 11
         alt  Alteromonas naphthalenivorans
         aal  Alteromonas australica H 17
         aaus  Alteromonas australica DE170
         asp  Alteromonas stellipolaris LMG 21856
         asq  Alteromonas stellipolaris LMG 21861
         aaw  Alteromonas addita
         alr  Alteromonas sp. RKMC-009
         ale  Alteromonas sp. Mac1
         alz  Alteromonas sp. Mac2
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Glaciecola (2)
         gag  Glaciecola sp. 4H-3-7+YE-5
         gni  Glaciecola nitratireducens
 
 
       Paraglaciecola (1)
         gps  Paraglaciecola psychrophila
 
       Lacimicrobium (1)
         lal  Lacimicrobium alkaliphilum
 
       Catenovulum (1)
         cate  Catenovulum sp. CCB-QB4
 
       Saliniradius (1)
         salh  Saliniradius amylolyticus
 
       Salinimonas (2)
         salm  Salinimonas sediminis
         salk  Salinimonas sp. KX18D6
 
 
       Hydrocarboniclastica (1)
         hmi  Hydrocarboniclastica marina
 
       Psychromonas (2)
         pin  Psychromonas ingrahamii
         psy  Psychromonas sp. CNPT3
 
 
       Ferrimonas (1)
         fbl  Ferrimonas balearica
 
       Moritella (3)
         mvs  Moritella viscosa
         mya  Moritella yayanosii
         mmaa  Moritella marina
 
 
 
       Cellvibrio (4)
         cja  Cellvibrio japonicus
         ceb  Cellvibrio sp. PSBB023
         cell  Cellvibrio sp. PSBB006
         cek  Cellvibrio sp. KY-YJ-3
 
 
 
 
       Saccharophagus (1)
         sde  Saccharophagus degradans
 
       Teredinibacter (1)
         ttu  Teredinibacter turnerae
 
       Simiduia (1)
         saga  Simiduia agarivorans
 
       Spongiibacter (1)
         spoi  Spongiibacter sp. IMCC21906
 
       Zhongshania (1)
         zal  Zhongshania aliphaticivorans
 
       Oceanicoccus (1)
         osg  Oceanicoccus sagamiensis
 
       Microbulbifer (5)
         mthd  Microbulbifer thermotolerans
         micc  Microbulbifer aggregans
         maga  Microbulbifer agarilyticus
         mii  Microbulbifer sp. A4B17
         mict  Microbulbifer sp. THAF38
 
 
 
 
 
       Halioglobus (2)
         hja  Halioglobus japonicus
         halc  Halioglobus sp. IMCC14385
 
 
       Coxiella (7)
         cbu  Coxiella burnetii RSA 493
         cbs  Coxiella burnetii RSA 331
         cbd  Coxiella burnetii Dugway 5J108-111
         cbg  Coxiella burnetii CbuG_Q212
         cbc  Coxiella burnetii CbuK_Q154
         cea  Coxiella endosymbiont of Amblyomma americanum
         cey  Coxiella mudrowiae
 
 
 
 
 
 
 
       Rickettsiella (1)
         rvi  Candidatus Rickettsiella viridis
 
       Aquicella (2)
         alg  Aquicella lusitana
         asip  Aquicella siphonis
 
 
       Legionella (21)
         lpn  Legionella pneumophila subsp. pneumophila Philadelphia 1 (serogroup 1)
         lph  Legionella pneumophila subsp. pneumophila HL06041035 (serogroup 1)
         lpo  Legionella pneumophila subsp. pneumophila Lorraine (serogroup 1)
         lpu  Legionella pneumophila subsp. pneumophila LPE509
         lpm  Legionella pneumophila subsp. pneumophila Thunder Bay
         lpf  Legionella pneumophila Lens (serogroup 1)
         lpp  Legionella pneumophila Paris (serogroup 1)
         lpc  Legionella pneumophila Corby
         lpa  Legionella pneumophila 2300/99 Alcoy (serogroup 1)
         lpe  Legionella pneumophila subsp. pneumophila ATCC 43290 (serogroup 12)
         llo  Legionella longbeachae
         lfa  Legionella fallonii
         lha  Legionella hackeliae
         lok  Legionella oakridgensis
         lcd  Legionella clemsonensis
         les  Legionella endosymbiont of Polyplax serrata
         lsh  Legionella sainthelensi
         llg  Legionella lansingensis
         lib  Legionella israelensis
         lgt  Legionella geestiana
         ljr  Legionella jordanis
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Tatlockia (1)
         tmc  Tatlockia micdadei
 
       Methylococcus (1)
         mca  Methylococcus capsulatus
 
       Methylomonas (5)
         mmt  Methylomonas methanica
         mdn  Methylomonas denitrificans
         mdh  Methylomonas sp. DH-1
         mko  Methylomonas koyamae
         metl  Methylomonas sp. LW13
 
 
 
 
 
       Methylomicrobium (2)
         mah  Methylomicrobium alcaliphilum
         mbur  Methylomicrobium buryatense
 
 
       Methylovulum (1)
         mpsy  Methylovulum psychrotolerans
 
       Methylocaldum (1)
         mmai  Methylocaldum marinum
 
       Methylospira (1)
         mmob  Candidatus Methylospira mobilis
 
       Francisella (42)
         ftu  Francisella tularensis subsp. tularensis SCHU S4
         ftq  Francisella tularensis subsp. tularensis SCHU S4 NR-28534
         ftf  Francisella tularensis subsp. tularensis FSC198
         ftw  Francisella tularensis subsp. tularensis WY96-3418
         ftr  Francisella tularensis subsp. tularensis NE061598
         ftt  Francisella tularensis subsp. tularensis TI0902
         ftg  Francisella tularensis subsp. tularensis TIGB03
         ftl  Francisella tularensis subsp. holarctica LVS
         fth  Francisella tularensis subsp. holarctica OSU18
         fta  Francisella tularensis subsp. holarctica FTNF002-00
         fts  Francisella tularensis subsp. holarctica F92
         fti  Francisella tularensis subsp. holarctica FSC200
         fto  Francisella tularensis subsp. holarctica PHIT-FT049
         ftc  Francisella tularensis subsp. holarctica FTT_1
         ftv  Francisella tularensis subsp. holarctica VT68
         ftz  Francisella tularensis subsp. holarctica 425
         ftm  Francisella tularensis subsp. mediasiatica FSC147
         ftn  Francisella tularensis subsp. novicida U112
         ftx  Francisella tularensis subsp. novicida U112
         ftd  Francisella tularensis subsp. novicida F6168
         fty  Francisella tularensis subsp. novicida DPG 3A-IS
         fcf  Francisella cf. novicida Fx1
         fcn  Francisella hispaniensis 3523
         fhi  Francisella hispaniensis FSC454
         fph  Francisella philomiragia subsp. philomiragia ATCC 25017
         fpt  Francisella philomiragia subsp. philomiragia ATCC 25015 O#319L
         fpi  Francisella philomiragia O#319-029
         fpm  Francisella philomiragia O#319-036
         fpx  Francisella philomiragia O#319-067
         fpz  Francisella philomiragia GA01-2794
         fpj  Francisella philomiragia GA01-2801
         frt  Francisella sp. TX077308
         fna  Francisella noatunensis subsp. orientalis Toba 04
         fnl  Francisella noatunensis subsp. orientalis LADL--07-285A
         frf  Francisella sp. FSC1006
         fper  Francisella persica
         fha  Francisella halioticida
         frx  Francisella sp. TX077310
         frm  Francisella sp. MA067296
         frc  Francisella sp. CA97-1460
         fad  Francisella adeliensis
         fmi  Francisella marina
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Allofrancisella (1)
         fgu  Allofrancisella guangzhouensis
 
       Hydrogenovibrio (2)
         tcx  Hydrogenovibrio crunogenus
         htr  Hydrogenovibrio thermophilus
 
 
       Thiomicrospira (3)
         tcy  Thiomicrospira cyclica
         tao  Thiomicrospira aerophila
         thio  Thiomicrospira sp. S5
 
 
 
       Methylophaga (2)
         mej  Methylophaga nitratireducenticrescens
         mec  Methylophaga frappieri
 
 
       Cycloclasticus (3)
         cyq  Cycloclasticus sp. P1
         cza  Cycloclasticus zancles
         cyy  Cycloclasticus sp. PY97N
 
 
 
       Piscirickettsia (1)
         psal  Piscirickettsia salmonis
 
       Thiomicrorhabdus (1)
         thig  Thiomicrorhabdus sp. G1
 
       Thioploca (1)
         tig  Thioploca ingrica
 
       Beggiatoa (1)
         blep  Beggiatoa leptomitiformis
 
       Nitrosococcus (4)
         noc  Nitrosococcus oceani
         nhl  Nitrosococcus halophilus
         nwa  Nitrosococcus watsonii
         nwr  Nitrosococcus wardiae
 
 
 
 
       Allochromatium (1)
         alv  Allochromatium vinosum
 
       Thiocystis (1)
         tvi  Thiocystis violascens
 
       Thioflavicoccus (1)
         tmb  Thioflavicoccus mobilis
 
       Marichromatium (1)
         mpur  Marichromatium purpuratum
 
       Tenderia (1)
         tee  Candidatus Tenderia electrophaga
 
       Nitrosoglobus (1)
         ntt  Candidatus Nitrosoglobus terrae
 
       Thiodictyon (1)
         tsy  Candidatus Thiodictyon syntrophicum
 
       Rheinheimera (1)
         rhh  Rheinheimera sp. D18
 
       Alkalilimnicola (1)
         aeh  Alkalilimnicola ehrlichii
 
       Halorhodospira (2)
         hha  Halorhodospira halophila
         hhk  Halorhodospira halochloris
 
 
       Ectothiorhodospira (2)
         hhc  Ectothiorhodospira haloalkaliphila
         ebs  Ectothiorhodospira sp. BSL-9
 
 
       Thioalkalivibrio (5)
         tgr  Thioalkalivibrio sulfidiphilus
         tkm  Thioalkalivibrio sp. K90mix
         tni  Thioalkalivibrio nitratireducens
         tti  Thioalkalivibrio paradoxus
         tvr  Thioalkalivibrio versutus
 
 
 
 
 
       Spiribacter (4)
         ssal  Spiribacter salinus
         spiu  Spiribacter curvatus
         sros  Spiribacter roseus
         spiz  Spiribacter sp. 2438
 
 
 
 
       Acidihalobacter (1)
         aprs  Acidihalobacter prosperus
 
       Halothiobacillus (2)
         hna  Halothiobacillus neapolitanus
         haz  Halothiobacillus sp. LS2
 
 
       Wenzhouxiangella (1)
         wma  Wenzhouxiangella marina
 
       Woeseia (1)
         woc  Woeseia oceani
 
       Granulosicoccus (1)
         gai  Granulosicoccus antarcticus
 
       Thiohalobacter (1)
         ttc  Thiohalobacter thiocyanaticus
 
       Hahella (2)
         hch  Hahella chejuensis
         hahe  Hahella sp. KA22
 
 
       Chromohalobacter (1)
         csa  Chromohalobacter salexigens
 
       Halomonas (16)
         hel  Halomonas elongata
         hcs  Halomonas campaniensis
         hak  Halomonas sp. KO116
         ham  Halomonas sp. R57-5
         hhu  Halomonas huangheensis
         hco  Halomonas chromatireducens
         hsi  Halomonas aestuarii
         halo  Halomonas sp. 1513
         hhh  Halomonas hydrothermalis
         hbe  Halomonas beimenensis
         hag  Halomonas sp. GFAJ-1
         haf  Halomonas sp. SF2003
         halk  Halomonas alkaliphila
         hvn  Halomonas venusta
         hol  Halomonas olivaria
         hsr  Halomonas sulfidaeris
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Portiera (9)
         ple  Candidatus Portiera aleyrodidarum BT-B
         ply  Candidatus Portiera aleyrodidarum BT-B-HRs
         plr  Candidatus Portiera aleyrodidarum BT-QVLC
         plo  Candidatus Portiera aleyrodidarum BT-QVLC
         pld  Candidatus Portiera aleyrodidarum TV
         plb  Candidatus Portiera aleyrodidarum TV-BCN
         plc  Candidatus Portiera aleyrodidarum AD-CAI
         pli  Candidatus Portiera aleyrodidarum AF-CAI
         paly  Candidatus Portiera aleyrodidarum MED
 
 
 
 
 
 
 
 
 
       Carsonella (7)
         crp  Candidatus Carsonella ruddii PV (Pachypsylla venusta)
         cru  Candidatus Carsonella ruddii CE (Ctenarytaina eucalypti)
         crc  Candidatus Carsonella ruddii CS (Ctenarytaina spatulata)
         crt  Candidatus Carsonella ruddii HT (Heteropsylla texana)
         crh  Candidatus Carsonella ruddii HC (Heteropsylla cubana)
         crv  Candidatus Carsonella ruddii PC (Pachypsylla celtidis)
         cri  Candidatus Carsonella ruddii DC (Diaphorina citri)
 
 
 
 
 
 
 
       Evansia (1)
         eme  Candidatus Evansia muelleri
 
       Zymobacter (1)
         zpl  Zymobacter palmae
 
       Halotalea (1)
         haa  Halotalea alkalilenta
 
       Cobetia (1)
         cmai  Cobetia marina
 
       Kushneria (3)
         kus  Kushneria konosiri
         kma  Kushneria marisflavi
         kuy  Kushneria sp. YCWA18
 
 
 
       Pistricoccus (1)
         paur  Pistricoccus aurantiacus
 
       Alcanivorax (5)
         abo  Alcanivorax borkumensis
         adi  Alcanivorax dieselolei
         apac  Alcanivorax pacificus
         aln  Alcanivorax sp. NBRC 101098
         axe  Alcanivorax xenomutans
 
 
 
 
 
       Ketobacter (1)
         kak  Ketobacter alkanivorans
 
       Kangiella (4)
         kko  Kangiella koreensis
         kge  Kangiella geojedonensis
         ksd  Kangiella sediminilitoris
         kpd  Kangiella profundi
 
 
 
 
       Marinomonas (3)
         mmw  Marinomonas sp. MWYL1
         mme  Marinomonas mediterranea
         mpc  Marinomonas posidonica
 
 
 
       Thalassolituus (2)
         tol  Thalassolituus oleivorans MIL-1
         tor  Thalassolituus oleivorans R6-15
 
 
       Oleispira (1)
         oai  Oleispira antarctica
 
       Marinobacterium (1)
         mars  Marinobacterium aestuarii
 
       Bacterioplanes (1)
         bsan  Bacterioplanes sanyensis
 
       Neptunomonas (1)
         ncu  Neptunomonas concharum
 
       Nitrincola (1)
         nik  Nitrincola sp. KXZD1103
 
       Gynuella (1)
         gsn  Gynuella sunshinyii
 
       Reinekea (1)
         rfo  Reinekea forsetii
 
       Oleiphilus (1)
         ome  Oleiphilus messinensis
 
       Litoricola (1)
         llp  Litoricola lipolytica
 
       Aeromonas (21)
         aha  Aeromonas hydrophila subsp. hydrophila ATCC 7966
         ahy  Aeromonas hydrophila ML09-119
         ahd  Aeromonas hydrophila YL17
         ahr  Aeromonas hydrophila AL09-71
         ahp  Aeromonas hydrophila pc104A
         ahj  Aeromonas hydrophila J-1
         ahh  Aeromonas hydrophila AL06-06
         ahi  Aeromonas hydrophila AH10
         aaj  Aeromonas hydrophila MX16A
         asa  Aeromonas salmonicida subsp. salmonicida A449
         aeo  Aeromonas salmonicida O23A
         avr  Aeromonas veronii B565
         avo  Aeromonas veronii TH0426
         amed  Aeromonas media
         asr  Aeromonas schubertii
         adh  Aeromonas dhakensis
         acav  Aeromonas caviae
         aem  Aeromonas sp. CU5
         aea  Aeromonas sp. ASNIH3
         arv  Aeromonas rivipollensis
         aes  Aeromonas sp. ASNIH5
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Tolumonas (1)
         tau  Tolumonas auensis
 
       Oceanimonas (1)
         oce  Oceanimonas sp. GK1
 
       Oceanisphaera (2)
         ocm  Oceanisphaera avium
         opf  Oceanisphaera profunda
 
 
       Zobellella (1)
         zdf  Zobellella denitrificans
 
       Dichelobacter (1)
         dno  Dichelobacter nodosus
 
       Cardiobacterium (1)
         chj  Cardiobacterium hominis
 
       Gilliamella (1)
         gap  Gilliamella apicola
 
       Frischella (1)
         fpp  Frischella perrara
 
       Steroidobacter (1)
         sdf  Steroidobacter denitrificans
 
       Solimonas (1)
         sok  Solimonas sp. K1W22B-7
 
       Immundisolibacter (1)
         gbi  Immundisolibacter cernigliae
 
       Sulfuricaulis (1)
         slim  Sulfuricaulis limicola
 
       Sulfurifustis (1)
         sva  Sulfurifustis variabilis
 
       Acidiferrobacter (1)
         acii  Acidiferrobacter sp. SPIII_3
 
       Salinisphaera (1)
         saln  Salinisphaera sp. LB1
 
       Thiolapillus (1)
         tbn  Thiolapillus brandeum
 
       Sedimenticola (1)
         seds  Sedimenticola thiotaurini
 
       Thioglobus (3)
         tsn  Candidatus Thioglobus singularis PS1
         thin  Candidatus Thioglobus sp. NP1
         tho  Candidatus Thioglobus autotrophicus
 
 
 
       Pseudohongiella (1)
         pspi  Pseudohongiella spirulinae
 
       Nardonella (1)
         eof  Endosymbiont of Sipalinus gigas
 
       Ruthia (1)
         rma  Candidatus Ruthia magnifica (Calyptogena magnifica)
 
       Unclassified Gammaproteobacteria (7)
         vok  Candidatus Vesicomyosocius okutanii (Calyptogena okutanii)
         ebh  Endosymbiont of Bathymodiolus septemdierum
         bci  Baumannia cicadellinicola Hc (Homalodisca coagulata)
         bcib  Candidatus Baumannia cicadellinicola BGSS
         bcig  Candidatus Baumannia cicadellinicola B-GSS
         gpb  Gamma proteobacterium HdN1
         enm  Endosymbiont of unidentified scaly snail isolate Monju
 
 
 
 
 
 
 
     Betaproteobacteria (422)
       Neisseria (27)
         nme  Neisseria meningitidis MC58 (serogroup B)
         nmp  Neisseria meningitidis alpha710 (serogroup B)
         nmh  Neisseria meningitidis H44/76 (serogroup B)
         nmd  Neisseria meningitidis G2136 (serogroup B)
         nmm  Neisseria meningitidis M01-240149 (serogroup B)
         nms  Neisseria meningitidis M01-240355 (serogroup B)
         nmq  Neisseria meningitidis M04-240196 (serogroup B)
         nmz  Neisseria meningitidis NZ-05/33 (serogroup B)
         nma  Neisseria meningitidis Z2491 (serogroup A)
         nmw  Neisseria meningitidis WUE 2594 (serogroup A)
         nmx  Neisseria meningitidis 510612  (serogroup A)
         nmc  Neisseria meningitidis FAM18 (serogroup C)
         nmn  Neisseria meningitidis 053442 (serogroup C)
         nmt  Neisseria meningitidis 8013 (serogroup C)
         nmi  Neisseria meningitidis alpha14 (cnl strain)
         ngo  Neisseria gonorrhoeae FA 1090
         ngk  Neisseria gonorrhoeae NCCP11945
         nla  Neisseria lactamica
         nel  Neisseria elongata
         nwe  Neisseria weaveri
         nsi  Neisseria mucosa FDAARGOS_260
         nmj  Neisseria mucosa ATCC 19696
         nei  Neisseria chenwenguii
         nek  Neisseria sp. KEM232
         nfv  Neisseria flavescens
         nsf  Neisseria subflava
         nzl  Neisseria zalophi
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Snodgrassella (1)
         salv  Snodgrassella alvi
 
       Kingella (1)
         kki  Kingella kingae
 
       Vitreoscilla (2)
         vff  Vitreoscilla filiformis
         vit  Vitreoscilla sp. C1
 
 
       Eikenella (2)
         ecor  Eikenella corrodens
         eex  Eikenella exigua
 
 
       Simonsiella (1)
         smur  Simonsiella muelleri
 
       Unclassified Neisseriaceae (1)
         nba  Neisseriaceae bacterium DSM 100970
 
       Chromobacterium (7)
         cvi  Chromobacterium violaceum
         cvc  Chromobacterium vaccinii
         chro  Chromobacterium sp. ATCC 53434
         chri  Chromobacterium sp. IIBBL 112-1
         crz  Chromobacterium rhizoryzae
         chrb  Chromobacterium sp. IIBBL 274-1
         chrm  Chromobacterium sp. 257-1
 
 
 
 
 
 
 
       Iodobacter (1)
         iod  Iodobacter sp. H11R3
 
       Laribacter (1)
         lhk  Laribacter hongkongensis
 
       Pseudogulbenkiania (1)
         pse  Pseudogulbenkiania sp. NH8B
 
       Jeongeupia (1)
         jeu  Jeongeupia sp. USM3
 
       Aquaspirillum (1)
         aql  Aquaspirillum sp. LM1
 
       Aquitalea (2)
         amah  Aquitalea magnusonii
         aqs  Aquitalea sp. USM4
 
 
       Ralstonia (13)
         rso  Ralstonia solanacearum GMI1000
         rsc  Ralstonia solanacearum CFBP2957
         rsl  Ralstonia solanacearum PSI07
         rsn  Ralstonia solanacearum Po82
         rsm  Ralstonia solanacearum CMR15
         rse  Ralstonia solanacearum FQY_4
         rsy  Ralstonia solanacearum UY031
         rpi  Ralstonia pickettii 12J
         rpf  Ralstonia pickettii 12D
         rpj  Ralstonia pickettii DTP0602
         rmn  Ralstonia mannitolilytica
         rin  Ralstonia insidiosa
         rpu  Ralstonia pseudosolanacearum
 
 
 
 
 
 
 
 
 
 
 
 
 
       Cupriavidus (13)
         reu  Cupriavidus pinatubonensis JMP134
         reh  Cupriavidus necator H16
         cnc  Cupriavidus necator N-1
         cuh  Cupriavidus necator NH9
         rme  Cupriavidus metallidurans
         cti  Cupriavidus taiwanensis
         cbw  Cupriavidus basilensis
         cgd  Cupriavidus gilardii
         ccup  Cupriavidus sp. USMAHM13
         cup  Cupriavidus malaysiensis
         cuu  Cupriavidus sp. USMAA2-4
         cpau  Cupriavidus pauculus
         cox  Cupriavidus oxalaticus
 
 
 
 
 
 
 
 
 
 
 
 
 
       Burkholderia (89)
         bma  Burkholderia mallei ATCC 23344
         bmv  Burkholderia mallei SAVP1
         bml  Burkholderia mallei NCTC 10229
         bmn  Burkholderia mallei NCTC 10247
         bmal  Burkholderia mallei 23344
         bmae  Burkholderia mallei 6
         bmaq  Burkholderia mallei BMQ
         bmai  Burkholderia mallei 2000031063
         bmaf  Burkholderia mallei FMH 23344
         bmaz  Burkholderia mallei NCTC 10247
         bmab  Burkholderia mallei 2002734299
         bps  Burkholderia pseudomallei K96243
         bpm  Burkholderia pseudomallei 1710b
         bpl  Burkholderia pseudomallei 1106a
         bpd  Burkholderia pseudomallei 668
         bpr  Burkholderia pseudomallei MSHR346
         bpse  Burkholderia pseudomallei MSHR305
         bpsm  Burkholderia pseudomallei MSHR511
         bpsu  Burkholderia pseudomallei MSHR146
         bpsd  Burkholderia pseudomallei MSHR520
         bpz  Burkholderia pseudomallei 1026b
         bpq  Burkholderia pseudomallei BPC006
         bpk  Burkholderia pseudomallei NCTC 13179
         bpsh  Burkholderia pseudomallei HBPUB10134a
         bpsa  Burkholderia pseudomallei NAU35A-3
         bpso  Burkholderia pseudomallei A79A
         but  Burkholderia pseudomallei TSV202
         bte  Burkholderia thailandensis E264
         btq  Burkholderia thailandensis 2002721723
         btj  Burkholderia thailandensis E444
         btz  Burkholderia thailandensis H0587
         btd  Burkholderia thailandensis MSMB121
         btv  Burkholderia thailandensis MSMB59
         bthe  Burkholderia thailandensis E254
         bthm  Burkholderia thailandensis USAMRU Malaysia #20
         btha  Burkholderia thailandensis 2003015869
         bthl  Burkholderia thailandensis 2002721643
         bok  Burkholderia oklahomensis E0147
         boc  Burkholderia oklahomensis C6786
         buu  Burkholderia sp. BDU6
         bvi  Burkholderia vietnamiensis G4
         bve  Burkholderia vietnamiensis LMG 10929
         bur  Burkholderia lata
         bcn  Burkholderia cenocepacia AU1054
         bch  Burkholderia cenocepacia HI2424
         bcm  Burkholderia cenocepacia MC0-3
         bcj  Burkholderia cenocepacia J2315
         bcen  Burkholderia cenocepacia DDS 22E-1
         bcew  Burkholderia cenocepacia DWS 37E-2
         bceo  Burkholderia cenocepacia H111
         bam  Burkholderia ambifaria AMMD
         bac  Burkholderia ambifaria MC40-6
         bmu  Burkholderia multivorans ATCC 17616 (JGI)
         bmj  Burkholderia multivorans ATCC 17616 (Tohoku)
         bmk  Burkholderia multivorans DDS 15A-1
         bmul  Burkholderia multivorans ATCC BAA-247
         bct  Burkholderia cepacia GG4
         bced  Burkholderia cepacia DDS 7H-2
         bcep  Burkholderia cepacia ATCC 25416
         bdl  Burkholderia dolosa
         bpyr  Burkholderia pyrrocinia
         bcon  Burkholderia contaminans
         bub  Burkholderia ubonensis
         bdf  Burkholderia diffusa
         blat  Burkholderia latens
         btei  Burkholderia territorii
         bsem  Burkholderia seminalis
         bpsl  Burkholderia pseudomultivorans
         bmec  Burkholderia metallica
         bstg  Burkholderia stagnalis
         bstl  Burkholderia stabilis
         bgl  Burkholderia glumae BGR1
         bgu  Burkholderia glumae LMG 2196 = ATCC 33617
         bug  Burkholderia sp. CCGE1001
         bgf  Burkholderia sp. CCGE1003
         bgd  Burkholderia gladioli BSR3
         bgo  Burkholderia gladioli ATCC 10248
         byi  Burkholderia sp. YI23
         buk  Burkholderia sp. KJ006
         buo  Burkholderia insecticola
         bue  Burkholderia sp. RPE67
         bul  Burkholderia sp. 2002721687
         buq  Burkholderia sp. HB1
         bgp  Burkholderia plantarii PG1
         bpla  Burkholderia plantarii ATCC 43733
         bud  Burkholderia sp. Bp5365
         buz  Burkholderia sp. OLGA172
         bum  Burkholderia sp. PAMC 26561
         bui  Burkholderia sp. PAMC 28687
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Paraburkholderia (16)
         bxe  Paraburkholderia xenovorans LB400
         bxb  Paraburkholderia xenovorans LB400
         bph  Paraburkholderia phymatum
         bge  Burkholderia sp. CCGE1002
         bpx  Paraburkholderia phenoliruptrix
         bpy  Paraburkholderia phytofirmans
         bfn  Paraburkholderia fungorum
         bcai  Paraburkholderia caribensis
         pspw  Paraburkholderia sprentiae
         para  Paraburkholderia sp. SOS3
         parb  Paraburkholderia aromaticivorans
         phs  Paraburkholderia hospita
         pter  Paraburkholderia terrae
         pgp  Paraburkholderia graminis
         pcj  Paraburkholderia caledonica
         pts  Paraburkholderia terricola
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Mycetohabitans (1)
         brh  Paraburkholderia rhizoxinica
 
       Polynucleobacter (4)
         pnu  Polynucleobacter asymbioticus
         pne  Polynucleobacter necessarius
         pdq  Polynucleobacter duraquae
         poh  Polynucleobacter paneuropaeus
 
 
 
 
       Pandoraea (13)
         ppk  Pandoraea pnomenusa 3kgm
         ppno  Pandoraea pnomenusa RB38
         ppnm  Pandoraea pnomenusa DSM 16536
         prb  Pandoraea pnomenusa
         ppul  Pandoraea pulmonicola
         pspu  Pandoraea sputorum
         papi  Pandoraea apista
         pve  Pandoraea vervacti
         pox  Pandoraea oxalativorans
         ptx  Pandoraea thiooxydans
         pfg  Pandoraea faecigallinarum
         pnr  Pandoraea norimbergensis
         pand  Pandoraea sp. XY-2
 
 
 
 
 
 
 
 
 
 
 
 
 
       Paucimonas (1)
         plg  Paucimonas lemoignei
 
       Hydromonas (1)
         hyf  Hydromonas sp. F02
 
       Lautropia (1)
         lmir  Lautropia mirabilis
 
       Mycoavidus (1)
         mcys  Mycoavidus cysteinexigens
 
       Bordetella (24)
         bpe  Bordetella pertussis Tohama I
         bpc  Bordetella pertussis CS
         bper  Bordetella pertussis 18323
         bpet  Bordetella pertussis B1917
         bpeu  Bordetella pertussis 137
         bpa  Bordetella parapertussis 12822
         bpar  Bordetella parapertussis Bpp5
         bbr  Bordetella bronchiseptica RB50
         bbm  Bordetella bronchiseptica MO149
         bbh  Bordetella bronchiseptica 253
         bbx  Bordetella bronchiseptica S798
         bpt  Bordetella petrii
         bav  Bordetella avium
         bho  Bordetella holmesii ATCC 51541
         bhm  Bordetella holmesii 44057
         bhz  Bordetella hinzii
         btrm  Bordetella trematum
         bbro  Bordetella bronchialis
         bfz  Bordetella flabilis
         bpdz  Bordetella pseudohinzii
         boh  Bordetella sp. H567
         bgm  Bordetella genomosp. 13
         boz  Bordetella sp. HZ20
         boj  Bordetella sp. J329
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Achromobacter (9)
         axy  Achromobacter xylosoxidans A8
         axo  Achromobacter xylosoxidans NH44784-1996
         axn  Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
         axx  Achromobacter xylosoxidans NCTC10807
         adt  Achromobacter denitrificans
         ais  Achromobacter insolitus
         asw  Achromobacter spanius
         achr  Achromobacter sp. AONIH1
         achb  Achromobacter sp. B7
 
 
 
 
 
 
 
 
 
       Taylorella (5)
         teq  Taylorella equigenitalis MCE9
         tea  Taylorella equigenitalis ATCC 35865
         teg  Taylorella equigenitalis 14/56
         tas  Taylorella asinigenitalis MCE3
         tat  Taylorella asinigenitalis 14/45
 
 
 
 
 
       Pusillimonas (2)
         put  Pusillimonas sp. T7-7
         pus  Pusillimonas sp. ye3
 
 
       Advenella (2)
         aka  Advenella kashmirensis
         amim  Advenella mimigardefordensis
 
 
       Castellaniella (1)
         cdn  Castellaniella defragrans
 
       Basilea (1)
         bpsi  Basilea psittacipulmonis
 
       Alcaligenes (3)
         afa  Alcaligenes faecalis ZD02
         afq  Alcaligenes faecalis JQ135
         aaqu  Alcaligenes aquatilis
 
 
 
       Paenalcaligenes (1)
         phn  Paenalcaligenes hominis
 
       Orrella (1)
         odi  Orrella dioscoreae
 
       Oligella (1)
         our  Oligella urethralis
 
       Pigmentiphaga (2)
         pig  Pigmentiphaga sp. H8
         pacr  Pigmentiphaga aceris
 
 
       Kerstersia (1)
         kgy  Kerstersia gyiorum
 
       Rhodoferax (6)
         rfr  Rhodoferax ferrireducens
         rsb  Rhodoferax saidenbachensis
         rac  Rhodoferax antarcticus
         rhy  Rhodoferax koreense
         rhf  Rhodoferax sp. CHu59-6-5
         rhg  Rhodoferax sp. Gr-4
 
 
 
 
 
 
       Polaromonas (4)
         pol  Polaromonas sp. JS666
         pna  Polaromonas naphthalenivorans
         pos  Polaromonas sp. SP1
         poo  Polaromonas sp. Pch-P
 
 
 
 
       Acidovorax (11)
         aav  Acidovorax citrulli
         ajs  Acidovorax sp. JS42
         dia  Acidovorax ebreus
         aaa  Acidovorax avenae
         ack  Acidovorax sp. KKS102
         acra  Acidovorax sp. RAC01
         acid  Acidovorax carolinensis NA2
         acip  Acidovorax carolinensis P4
         acin  Acidovorax carolinensis NA3
         acis  Acidovorax carolinensis P3
         acio  Acidovorax sp. 1608163
 
 
 
 
 
 
 
 
 
 
 
       Verminephrobacter (1)
         vei  Verminephrobacter eiseniae
 
       Delftia (4)
         dac  Delftia acidovorans
         del  Delftia sp. Cs1-4
         dts  Delftia tsuruhatensis
         dhk  Delftia sp. HK171
 
 
 
 
       Variovorax (6)
         vap  Variovorax paradoxus S110
         vpe  Variovorax paradoxus EPS
         vpd  Variovorax paradoxus B4
         vaa  Variovorax sp. PAMC 28711
         vbo  Variovorax boronicumulans
         vam  Variovorax sp. PMC12
 
 
 
 
 
 
       Comamonas (5)
         ctt  Comamonas thiooxydans
         ctes  Comamonas testosteroni TK102
         cke  Comamonas kerstersii
         cser  Comamonas serinivorans
         cof  Comamonas sp. NLF 7-7
 
 
 
 
 
       Alicycliphilus (2)
         adn  Alicycliphilus denitrificans BC
         adk  Alicycliphilus denitrificans K601
 
 
       Ramlibacter (1)
         rta  Ramlibacter tataouinensis
 
       Symbiobacter (1)
         cbx  Candidatus Symbiobacter mobilis
 
       Ottowia (2)
         oto  Ottowia sp. oral taxon 894
         otk  Ottowia oryzae
 
 
       Limnohabitans (2)
         lim  Limnohabitans sp. 103DPR2
         lih  Limnohabitans sp. 63ED37-2
 
 
       Hydrogenophaga (5)
         hyr  Hydrogenophaga sp. RAC07
         hyb  Hydrogenophaga sp. PBC
         hyl  Hydrogenophaga sp. LPB0072
         hyc  Hydrogenophaga sp. PAMC20947
         hpse  Hydrogenophaga pseudoflava
 
 
 
 
 
       Diaphorobacter (1)
         dpy  Diaphorobacter polyhydroxybutyrativorans
 
       Simplicispira (1)
         simp  Simplicispira suum
 
       Melaminivora (2)
         melm  Melaminivora sp. SC2-7
         mela  Melaminivora sp. SC2-9
 
 
       Serpentinomonas (2)
         cbaa  Serpentinomonas raichei
         cbab  Serpentinomonas mccroryi
 
 
       Methylibium (2)
         mpt  Methylibium petroleiphilum
         metp  Methylibium sp. Pch-M
 
 
       Herminiimonas (1)
         har  Herminiimonas arsenicoxydans
 
       Janthinobacterium (7)
         mms  Janthinobacterium sp. Marseille
         jag  Janthinobacterium agaricidamnosum
         jab  Janthinobacterium sp. B9-8
         jaz  Janthinobacterium sp. 1_2014MBL_MicDiv
         jal  Janthinobacterium sp. LM6
         jsv  Janthinobacterium svalbardensis
         jaj  Janthinobacterium sp. 17J80-10
 
 
 
 
 
 
 
       Herbaspirillum (6)
         hse  Herbaspirillum seropedicae SmR1
         hsz  Herbaspirillum seropedicae Z67
         hht  Herbaspirillum hiltneri
         hrb  Herbaspirillum rubrisubalbicans
         hee  Herbaspirillum sp. meg3
         hhf  Herbaspirillum huttiense
 
 
 
 
 
 
       Zinderia (1)
         zin  Candidatus Zinderia insecticola
 
       Collimonas (3)
         cfu  Collimonas fungivorans
         care  Collimonas arenae
         cpra  Collimonas pratensis
 
 
 
       Massilia (8)
         mnr  Massilia sp. NR 4-1
         masw  Massilia sp. WG5
         mass  Massilia violaceinigra
         masz  Massilia armeniaca
         mtim  Massilia oculi
         masy  Massilia sp. YMA4
         mali  Massilia albidiflava
         mum  Massilia umbonata
 
 
 
 
 
 
 
 
       Oxalobacter (1)
         ofo  Oxalobacter formigenes
 
       Undibacterium (1)
         upv  Undibacterium parvum
 
       Noviherbaspirillum (1)
         nok  Noviherbaspirillum sp. UKPF54
 
       Sutterella (2)
         sutt  Sutterella megalosphaeroides
         sutk  Sutterella sp. KGMB03119
 
 
       Leptothrix (1)
         lch  Leptothrix cholodnii
 
       Thiomonas (2)
         tin  Thiomonas intermedia
         thi  Thiomonas arsenitoxydans
 
 
       Rubrivivax (2)
         rge  Rubrivivax gelatinosus
         rbn  Rubrivivax benzoatilyticus
 
 
       Roseateles (1)
         rdp  Roseateles depolymerans
 
       Paucibacter (1)
         pkt  Paucibacter sp. KCTC 42545
 
       Mitsuaria (1)
         miu  Mitsuaria sp. 7
 
       Rhizobacter (1)
         rgu  Rhizobacter gummiphilus
 
       Aquabacterium (1)
         aon  Aquabacterium olei
 
       Sphaerotilus (1)
         snn  Sphaerotilus natans
 
       Unclassified Burkholderiales (3)
         bbag  Burkholderiales bacterium GJ-E10
         bbay  Burkholderiales bacterium YL45
         pbh  Polyangium brachysporum
 
 
 
       Nitrosomonas (7)
         neu  Nitrosomonas europaea
         net  Nitrosomonas eutropha
         nit  Nitrosomonas sp. AL212
         nii  Nitrosomonas sp. Is79A3
         nco  Nitrosomonas communis
         nur  Nitrosomonas ureae
         nst  Nitrosomonas stercoris
 
 
 
 
 
 
 
       Nitrosospira (2)
         nmu  Nitrosospira multiformis
         nlc  Nitrosospira lacus
 
 
       Sulfuritalea (1)
         shd  Sulfuritalea hydrogenivorans
 
       Methyloversatilis (1)
         metr  Methyloversatilis sp. RAC08
 
       Thiobacillus (1)
         tbd  Thiobacillus denitrificans
 
       Methylobacillus (1)
         mfa  Methylobacillus flagellatus
 
       Methylotenera (2)
         mmb  Methylotenera mobilis
         meh  Methylotenera versatilis
 
 
       Methylovorus (2)
         mei  Methylovorus glucosetrophus
         mep  Methylovorus sp. MP688
 
 
       Methylopumilus (2)
         mbac  Candidatus Methylopumilus turicensis
         mbat  Candidatus Methylopumilus planktonicus
 
 
       Methylophilus (1)
         meu  Methylophilus sp. TWE2
 
       Sideroxydans (1)
         slt  Sideroxydans lithotrophicus
 
       Gallionella (1)
         gca  Gallionella capsiferriformans
 
       Sulfuricella (1)
         sdr  Sulfuricella denitrificans
 
       Sulfuriferula (1)
         sulf  Sulfuriferula sp. AH1
 
       Ferriphaselus (1)
         fam  Ferriphaselus amnicola
 
       Aromatoleum (1)
         eba  Aromatoleum aromaticum
 
       Azospira (1)
         dsu  Azospira oryzae
 
       Rugosibacter (1)
         rbu  Rugosibacter aromaticivorans
 
       Oryzomicrobium (1)
         otr  Oryzomicrobium terrae
 
       Unclassified Rhodocyclaceae (1)
         rbh  Rhodocyclaceae bacterium Thauera-like
 
       Dechloromonas (2)
         dar  Dechloromonas aromatica
         dey  Dechloromonas sp. HYN0024
 
 
       Azoarcus (8)
         azo  Azoarcus sp. BH72
         aza  Azoarcus sp. KH32C
         azi  Azoarcus sp. CIB
         aoa  Azoarcus olearius
         atw  Azoarcus sp. SY39
         acom  Azoarcus communis
         azd  Azoarcus sp. DN11
         azr  Azoarcus sp. DD4
 
 
 
 
 
 
 
 
       Thauera (5)
         tmz  Thauera sp. MZ1T
         thu  Thauera humireducens
         tcl  Thauera chlorobenzoica
         thk  Thauera sp. K11
         tak  Thauera aromatica
 
 
 
 
 
       Unclassified Zoogloeaceae (1)
         zpa  Zoogloeaceae bacteirum Par-f-2
 
       Accumulibacter (1)
         app  Accumulibacter phosphatis
 
       Tremblaya (3)
         tpn  Candidatus Tremblaya princeps PCIT
         tpq  Candidatus Tremblaya princeps PCVAL
         tpj  Candidatus Tremblaya phenacola
 
 
 
       Kinetoplastibacterium (8)
         kci  Candidatus Kinetoplastibacterium crithidii (ex Angomonas deanei ATCC 30255)
         kct  Candidatus Kinetoplastibacterium crithidii TCC036E
         kbl  Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas culicis)
         kbt  Candidatus Kinetoplastibacterium blastocrithidii TCC012E
         kde  Candidatus Kinetoplastibacterium desouzaii
         kga  Candidatus Kinetoplastibacterium galatii
         kon  Candidatus Kinetoplastibacterium oncopeltii
         kso  Candidatus Kinetoplastibacterium sorsogonicusi
 
 
 
 
 
 
 
 
       Profftella (1)
         ssdc  Candidatus Profftella armatura
 
       Nasuia (1)
         ndl  Candidatus Nasuia deltocephalinicola
 
       Vidania (1)
         vfg  Candidatus Vidania fulgoroideae
 
       Unclassified Betaproteobacteria (3)
         bprc  Beta proteobacterium CB
         beb  Betaproteobacteria bacterium UKL13-2
         beba  Betaproteobacteria bacterium GR16-43
 
 
 
     Epsilonproteobacteria (174)
       Helicobacter (75)
         hpy  Helicobacter pylori 26695
         heo  Helicobacter pylori 26695
         hpj  Helicobacter pylori J99
         hpa  Helicobacter pylori HPAG1
         hps  Helicobacter pylori Shi470
         hhp  Helicobacter pylori Shi112
         hhq  Helicobacter pylori Shi169
         hhr  Helicobacter pylori Shi417
         hpg  Helicobacter pylori G27
         hpp  Helicobacter pylori P12
         hpb  Helicobacter pylori B38
         hpl  Helicobacter pylori B8
         hpc  Helicobacter pylori PeCan4
         hca  Helicobacter pylori PeCan18
         hpm  Helicobacter pylori SJM180
         hpe  Helicobacter pylori ELS37
         hpo  Helicobacter pylori 35A
         hpi  Helicobacter pylori 908
         hpq  Helicobacter pylori 2017
         hpw  Helicobacter pylori 2018
         hpu  Helicobacter pylori Cuz20
         hef  Helicobacter pylori F16
         hpf  Helicobacter pylori F30
         heq  Helicobacter pylori F32
         hex  Helicobacter pylori F57
         hpt  Helicobacter pylori Sat464
         hpz  Helicobacter pylori 52
         hpv  Helicobacter pylori v225d
         hpx  Helicobacter pylori 83
         hen  Helicobacter pylori SNT49
         hph  Helicobacter pylori Lithuania75
         heg  Helicobacter pylori Gambia94/24
         hpn  Helicobacter pylori India7
         hep  Helicobacter pylori Puno120
         heu  Helicobacter pylori Puno135
         hes  Helicobacter pylori SouthAfrica7
         hpys  Helicobacter pylori SouthAfrica20
         hcn  Helicobacter pylori HUP-B14
         hpd  Helicobacter pylori 51
         hey  Helicobacter pylori XZ274
         her  Helicobacter pylori Rif1
         hei  Helicobacter pylori Rif2
         hpya  Helicobacter pylori Aklavik117
         hpyk  Helicobacter pylori Aklavik86
         hpyo  Helicobacter pylori OK113
         hpyl  Helicobacter pylori OK310
         hpyb  Helicobacter pylori oki102
         hpyc  Helicobacter pylori oki112
         hpyd  Helicobacter pylori oki128
         hpye  Helicobacter pylori oki154
         hpyf  Helicobacter pylori oki422
         hpyg  Helicobacter pylori oki673
         hpyh  Helicobacter pylori oki828
         hpyj  Helicobacter pylori oki898
         hpyr  Helicobacter pylori UM032
         hpyi  Helicobacter pylori UM037
         hpyu  Helicobacter pylori UM066
         hpym  Helicobacter pylori UM299
         hem  Helicobacter pylori UM298
         heb  Helicobacter pylori BM012A
         hez  Helicobacter pylori BM012S
         hhe  Helicobacter hepaticus
         hac  Helicobacter acinonychis
         hms  Helicobacter mustelae
         hfe  Helicobacter felis
         hbi  Helicobacter bizzozeronii
         hce  Helicobacter cetorum MIT 00-7128
         hcm  Helicobacter cetorum MIT 99-5656
         hcp  Helicobacter cinaedi PAGU611
         hcb  Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
         hhm  Helicobacter heilmannii
         hty  Helicobacter typhlonius
         hbl  Helicobacter bilis
         had  Helicobacter apodemus
         het  Helicobacter sp. MIT 01-6242
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Wolinella (1)
         wsu  Wolinella succinogenes
 
       Sulfurimonas (4)
         tdn  Sulfurimonas denitrificans
         sua  Sulfurimonas autotrophica
         suln  Sulfurimonas sp. 1-1N
         sulg  Sulfurimonas sp. GYSZ_1
 
 
 
 
       Sulfuricurvum (2)
         sku  Sulfuricurvum kujiense
         sulr  Candidatus Sulfuricurvum sp. RIFRC-1
 
 
       Campylobacter (67)
         cje  Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
         cjb  Campylobacter jejuni subsp. jejuni NCTC 11168-BN148
         cjj  Campylobacter jejuni subsp. jejuni 81-176
         cju  Campylobacter jejuni subsp. jejuni 81116
         cjn  Campylobacter jejuni subsp. jejuni ICDCCJ07001
         cji  Campylobacter jejuni subsp. jejuni IA3902
         cjm  Campylobacter jejuni subsp. jejuni M1
         cjs  Campylobacter jejuni subsp. jejuni S3
         cjp  Campylobacter jejuni subsp. jejuni PT14
         cjej  Campylobacter jejuni subsp. jejuni 00-2426
         cjeu  Campylobacter jejuni subsp. jejuni 00-2538
         cjen  Campylobacter jejuni subsp. jejuni 00-2544
         cjei  Campylobacter jejuni subsp. jejuni 00-2425
         cjer  Campylobacter jejuni subsp. jejuni R14
         cjv  Campylobacter jejuni subsp. jejuni MTVDSCj20
         cjy  Campylobacter jejuni subsp. jejuni YH001
         cjq  Campylobacter jejuni subsp. jejuni 35925B2
         cjl  Campylobacter jejuni subsp. jejuni 00-1597
         cjw  Campylobacter jejuni subsp. jejuni 00-6200
         cjr  Campylobacter jejuni RM1221
         cjd  Campylobacter jejuni subsp. doylei 269.97
         cjz  Campylobacter jejuni 32488
         cjx  Campylobacter jejuni 4031
         cff  Campylobacter fetus subsp. fetus 82-40
         cft  Campylobacter fetus subsp. fetus 04/554
         cfv  Campylobacter fetus subsp. venerealis cfvi03/293
         cfx  Campylobacter fetus subsp. venerealis 97/608
         cfz  Campylobacter fetus subsp. venerealis 84-112
         camp  Campylobacter fetus subsp. testudinum 03-427
         cfp  Campylobacter fetus subsp. testudinum pet-3
         ccv  Campylobacter curvus
         cha  Campylobacter hominis
         cco  Campylobacter concisus 13826
         ccoc  Campylobacter concisus ATCC 33237
         cla  Campylobacter lari RM2100
         clr  Campylobacter lari RM16701
         clm  Campylobacter lari RM16712
         clq  Campylobacter lari CCUG 22395
         cln  Campylobacter lari NCTC 11845
         cll  Campylobacter lari subsp. concheus LMG 11760
         ccol  Campylobacter coli 76339
         ccc  Campylobacter coli CVM N29710
         ccq  Campylobacter coli 15-537360
         ccf  Campylobacter coli RM1875
         ccy  Campylobacter coli RM4661
         ccoi  Campylobacter coli RM5611
         ccof  Campylobacter coli FB1
         ccoo  Campylobacter coli OR12
         caj  Campylobacter iguaniorum
         cis  Campylobacter insulaenigrae
         cvo  Campylobacter volucris
         cpel  Campylobacter peloridis
         camr  Campylobacter sp. RM16704
         csm  Campylobacter subantarcticus LMG 24374
         csf  Campylobacter subantarcticus LMG 24377
         cgra  Campylobacter gracilis
         cure  Campylobacter ureolyticus
         chyo  Campylobacter hyointestinalis
         chv  Campylobacter helveticus
         cspf  Campylobacter sputorum
         cpin  Campylobacter pinnipediorum
         ccun  Campylobacter cuniculorum
         clx  Campylobacter lanienae
         cavi  Campylobacter avium
         chw  Campylobacter hepaticus
         camz  Campylobacter sp. RM12175
         camy  Campylobacter sp. RM6137
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Arcobacter (8)
         abu  Arcobacter butzleri RM4018
         abt  Arcobacter butzleri ED-1
         abl  Arcobacter butzleri 7h1h
         ant  Arcobacter nitrofigilis
         ask  Arcobacter skirrowii
         ahs  Arcobacter halophilus
         amyt  Arcobacter mytili
         amar  Arcobacter marinus
 
 
 
 
 
 
 
 
       Unclassified Arcobacter (2)
         arc  Arcobacter sp. L
         alp  Arcobacter sp. LPB0137
 
 
       Sulfurospirillum (6)
         sdl  Sulfurospirillum deleyianum
         sba  Sulfurospirillum barnesii
         smul  Sulfurospirillum multivorans
         shal  Sulfurospirillum halorespirans
         suls  Sulfurospirillum sp. SL2-1
         sulj  Sulfurospirillum sp. JPD-1
 
 
 
 
 
 
       Hydrogenimonas (1)
         hyo  Hydrogenimonas sp. MAG
 
       Nitratifractor (1)
         nsa  Nitratifractor salsuginis
 
       Nitratiruptor (1)
         nis  Nitratiruptor sp. SB155-2
 
       Sulfurovum (2)
         sun  Sulfurovum sp. NBC37-1
         slh  Sulfurovum lithotrophicum
 
 
       Nautilia (2)
         nam  Nautilia profundicola
         nap  Nautilia sp. PV-1
 
 
       Caminibacter (1)
         cmed  Caminibacter mediatlanticus
 
       Cetia (1)
         cpaf  Cetia pacifica
 
     Deltaproteobacteria (97)
       Geobacter (11)
         gsu  Geobacter sulfurreducens PCA
         gsk  Geobacter sulfurreducens KN400
         gme  Geobacter metallireducens
         gur  Geobacter uraniireducens
         glo  Geobacter lovleyi
         gbm  Geobacter bemidjiensis
         geo  Geobacter daltonii FRC-32
         gem  Geobacter sp. M21
         geb  Geobacter sp. M18
         gpi  Geobacter pickeringii
         gao  Geobacter anodireducens
 
 
 
 
 
 
 
 
 
 
 
       Geoalkalibacter (1)
         gsb  Geoalkalibacter subterraneus
 
       Pelobacter (4)
         pca  Pelobacter carbinolicus
         ppd  Pelobacter propionicus
         pace  Pelobacter acetylenicus
         pef  Pelobacter sp. SFB93
 
 
 
 
       Desulfuromonas (2)
         des  Desulfuromonas soudanensis
         deu  Desulfuromonas sp. DDH964
 
 
       Desulfovibrio (17)
         dvu  Desulfovibrio vulgaris Hildenborough
         dvl  Desulfovibrio vulgaris DP4
         dvm  Desulfovibrio vulgaris Miyazaki F
         dvg  Desulfovibrio vulgaris RCH1
         dde  Desulfovibrio alaskensis
         dds  Desulfovibrio desulfuricans ATCC 27774
         ddn  Desulfovibrio desulfuricans ND132
         dma  Desulfovibrio magneticus
         dsa  Desulfovibrio salexigens
         dhy  Desulfovibrio hydrothermalis
         dgg  Desulfovibrio gigas
         dfi  Desulfovibrio fairfieldensis
         dpg  Desulfovibrio piger
         def  Desulfovibrio sp. G11
         dtr  Candidatus Desulfovibrio trichonymphae
         dfl  Desulfovibrio ferrophilus
         daf  Desulfovibrio africanus
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Pseudodesulfovibrio (4)
         das  Pseudodesulfovibrio aespoeensis
         dpi  Pseudodesulfovibrio piezophilus
         dej  Pseudodesulfovibrio indicus
         pprf  Pseudodesulfovibrio profundus
 
 
 
 
       Lawsonia (2)
         lip  Lawsonia intracellularis PHE/MN1-00
         lir  Lawsonia intracellularis N343
 
 
       Desulfomicrobium (2)
         dba  Desulfomicrobium baculatum
         doa  Desulfomicrobium orale
 
 
       Desulfohalobium (1)
         drt  Desulfohalobium retbaense
 
       Desulfotalea (1)
         dps  Desulfotalea psychrophila
 
       Desulfurivibrio (1)
         dak  Desulfurivibrio alkaliphilus
 
       Desulfobulbus (2)
         dpr  Desulfobulbus propionicus
         deo  Desulfobulbus oralis
 
 
       Desulfocapsa (1)
         dsf  Desulfocapsa sulfexigens
 
       Desulfococcus (2)
         dol  Desulfococcus oleovorans
         dml  Desulfococcus multivorans
 
 
       Desulfatibacillum (1)
         dal  Desulfatibacillum alkenivorans
 
       Desulfobacterium (1)
         dat  Desulfobacterium autotrophicum
 
       Desulfobacula (1)
         dto  Desulfobacula toluolica
 
       Desulfosarcina (2)
         dov  Desulfosarcina ovata
         dwd  Desulfosarcina widdelii
 
 
       Anaeromyxobacter (4)
         ade  Anaeromyxobacter dehalogenans 2CP-C
         acp  Anaeromyxobacter dehalogenans 2CP-1
         afw  Anaeromyxobacter sp. Fw109-5
         ank  Anaeromyxobacter sp. K
 
 
 
 
       Myxococcus (5)
         mxa  Myxococcus xanthus
         mfu  Myxococcus fulvus
         msd  Myxococcus stipitatus
         mym  Myxococcus hansupus
         mmas  Myxococcus macrosporus
 
 
 
 
 
       Corallococcus (1)
         ccx  Corallococcus coralloides
 
       Stigmatella (1)
         sur  Stigmatella aurantiaca
 
       Archangium (1)
         age  Archangium gephyra
 
       Melittangium (1)
         mbd  Melittangium boletus
 
       Cystobacter (1)
         cfus  Cystobacter fuscus
 
       Vulgatibacter (1)
         vin  Vulgatibacter incomptus
 
       Sorangium (2)
         scl  Sorangium cellulosum So ce56
         scu  Sorangium cellulosum So0157-2
 
 
       Chondromyces (1)
         ccro  Chondromyces crocatus
 
       Sandaracinus (1)
         samy  Sandaracinus amylolyticus
 
       Labilithrix (1)
         llu  Labilithrix luteola
 
       Minicystis (1)
         mrm  Minicystis rosea
 
       Haliangium (1)
         hoh  Haliangium ochraceum
 
       Syntrophus (1)
         sat  Syntrophus aciditrophicus
 
       Desulfobacca (1)
         dao  Desulfobacca acetoxidans
 
       Desulfomonile (1)
         dti  Desulfomonile tiedjei
 
       Syntrophobacter (1)
         sfu  Syntrophobacter fumaroxidans
 
       Desulfoglaeba (1)
         dax  Desulfoglaeba alkanexedens
 
       Desulfarculus (1)
         dbr  Desulfarculus baarsii
 
       Hippea (1)
         hmr  Hippea maritima
 
       Desulfurella (1)
         dav  Desulfurella acetivorans
 
       Bradymonas (1)
         bsed  Bradymonas sediminis
 
       Bdellovibrio (6)
         bba  Bdellovibrio bacteriovorus HD100
         bbat  Bdellovibrio bacteriovorus Tiberius
         bbw  Bdellovibrio bacteriovorus W
         bbac  Bdellovibrio bacteriovorus 109J
         bex  Bdellovibrio exovorus
         bdq  Bdellovibrio sp. qaytius
 
 
 
 
 
 
       Halobacteriovorax (2)
         bmx  Halobacteriovorax marinus
         hax  Halobacteriovorax sp. BALOs_7
 
 
       Bacteriovorax (1)
         bsto  Bacteriovorax stolpii
 
       Unclassified Silvanigrellales (1)
         sbf  Silvanigrellales bacterium RF1110005
 
     Alphaproteobacteria (653)
       Rickettsia (47)
         rpr  Rickettsia prowazekii Madrid E
         rpo  Rickettsia prowazekii BuV67-CWPP
         rpw  Rickettsia prowazekii Chernikova
         rpz  Rickettsia prowazekii Dachau
         rpg  Rickettsia prowazekii GvV257
         rps  Rickettsia prowazekii Katsinyian
         rpv  Rickettsia prowazekii RpGvF24
         rpq  Rickettsia prowazekii Rp22
         rpl  Rickettsia prowazekii Breinl
         rpn  Rickettsia prowazekii NMRC Madrid E
         rty  Rickettsia typhi Wilmington
         rtt  Rickettsia typhi TH1527
         rtb  Rickettsia typhi B9991CWPP
         rcm  Rickettsia canadensis McKiel
         rcc  Rickettsia canadensis CA410
         rbe  Rickettsia bellii RML369-C
         rbo  Rickettsia bellii OSU 85-389
         rco  Rickettsia conorii
         rfe  Rickettsia felis
         rak  Rickettsia akari
         rri  Rickettsia rickettsii Sheila Smith
         rrj  Rickettsia rickettsii Iowa
         rra  Rickettsia rickettsii Arizona
         rrc  Rickettsia rickettsii Colombia
         rrh  Rickettsia rickettsii Hauke
         rrb  Rickettsia rickettsii Brazil
         rrn  Rickettsia rickettsii Hino
         rrp  Rickettsia rickettsii Hlp#2
         rrm  Rickettsia rickettsii Morgan
         rrr  Rickettsia rickettsii R
         rms  Rickettsia massiliae MTU5
         rmi  Rickettsia massiliae AZT80
         rpk  Rickettsia peacockii
         raf  Rickettsia africae
         rhe  Rickettsia heilongjiangensis
         rja  Rickettsia japonica
         rsv  Rickettsia slovaca 13-B
         rsw  Rickettsia slovaca D-CWPP
         rph  Rickettsia philipii
         rau  Rickettsia australis
         rmo  Rickettsia montanensis
         rpp  Rickettsia parkeri
         rre  Rickettsia rhipicephali
         ram  Rickettsia amblyommatis GAT-30V
         rab  Rickettsia amblyommatis Ac37
         rmc  Rickettsia monacensis
         ric  Rickettsia sp. MEAM1 (Bemisia tabaci)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Orientia (2)
         ots  Orientia tsutsugamushi Boryong
         ott  Orientia tsutsugamushi Ikeda
 
 
       Phycorickettsia (1)
         ptc  Candidatus Phycorickettsia trachydisci
 
       Wolbachia (10)
         wol  Wolbachia wMel (Drosophila melanogaster)
         wri  Wolbachia wRi (Drosophila simulans)
         wen  Wolbachia wHa (Drosophila simulans)
         wed  Wolbachia wNo (Drosophila simulans)
         wpi  Wolbachia wPip (Culex quinquefasciatus)
         wbm  Wolbachia wBm (Brugia malayi)
         woo  Wolbachia wOo (Onchocerca ochengi)
         wcl  Wolbachia wCle (Cimex lectularius)
         weo  Wolbachia wFol (Folsomia candida)
         wpp  Wolbachia pipientis
 
 
 
 
 
 
 
 
 
 
       Anaplasma (10)
         ama  Anaplasma marginale St. Maries
         amf  Anaplasma marginale Florida
         amw  Anaplasma marginale Dawn
         amp  Anaplasma marginale Gypsy Plains
         acn  Anaplasma centrale
         aph  Anaplasma phagocytophilum HZ
         apy  Anaplasma phagocytophilum HZ2
         apd  Anaplasma phagocytophilum Dog2
         apha  Anaplasma phagocytophilum JM
         aoh  Anaplasma ovis
 
 
 
 
 
 
 
 
 
 
       Ehrlichia (14)
         eru  Ehrlichia ruminantium Welgevonden (South Africa)
         erw  Ehrlichia ruminantium Welgevonden (France)
         erg  Ehrlichia ruminantium Gardel
         ecn  Ehrlichia canis
         ech  Ehrlichia chaffeensis Arkansas
         echa  Ehrlichia chaffeensis Heartland
         echj  Ehrlichia chaffeensis Jax
         echl  Ehrlichia chaffeensis Liberty
         echs  Ehrlichia chaffeensis Osceola
         echv  Ehrlichia chaffeensis Saint Vincent
         echw  Ehrlichia chaffeensis Wakulla
         echp  Ehrlichia chaffeensis West Paces
         emr  Ehrlichia muris
         ehh  Ehrlichia sp. HF
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Neorickettsia (3)
         nse  Neorickettsia sennetsu
         nri  Neorickettsia risticii
         nhm  Neorickettsia helminthoeca
 
 
 
       Midichloria (1)
         mmn  Candidatus Midichloria mitochondrii
 
       Fokinia (1)
         fso  Candidatus Fokinia solitaria
 
       Unclassified Rickettsiales (2)
         rbt  Rickettsiales bacterium Ac37b
         ren  Rickettsiales endosymbiont of Stachyamoeba lipophora
 
 
       Paracaedibacter (1)
         paca  Candidatus Paracaedibacter acanthamoebae
 
       Paracaedimonas (1)
         caq  Candidatus Paracaedimonas acanthamoebae
 
       Nucleicultrix (1)
         naf  Candidatus Nucleicultrix amoebiphila
 
       Unclassified Holosporaceae (1)
         eaa  Endosymbiont of Acanthamoeba sp. UWC8
 
       Mesorhizobium (10)
         mlo  Mesorhizobium japonicum MAFF 303099
         mln  Mesorhizobium loti NZP2037
         mci  Mesorhizobium ciceri (biovar Biserrulae)
         mop  Mesorhizobium opportunistum
         mam  Mesorhizobium australicum
         mamo  Mesorhizobium amorphae
         meso  Mesorhizobium sp. B7
         mesw  Mesorhizobium sp. WSM1497
         mesm  Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2
         mesp  Mesorhizobium sp. Pch-S
 
 
 
 
 
 
 
 
 
 
       Chelativorans (1)
         mes  Chelativorans sp. BNC1
 
       Hoeflea (1)
         hoe  Hoeflea sp. IMCC20628
 
       Aminobacter (2)
         aak  Aminobacter aminovorans
         amih  Aminobacter sp. MSH1
 
 
       Phyllobacterium (1)
         pht  Phyllobacterium zundukense
 
       Roseitalea (1)
         rpod  Roseitalea porphyridii
 
       Parvibaculum (1)
         pla  Parvibaculum lavamentivorans
 
       Unclassified Rhodobiaceae (1)
         rbs  Rhodobiaceae bacterium SMS8
 
       Sinorhizobium (15)
         sme  Sinorhizobium meliloti 1021
         smk  Sinorhizobium meliloti AK83
         smq  Sinorhizobium meliloti BL225C
         smx  Sinorhizobium meliloti SM11
         smi  Sinorhizobium meliloti Rm41
         smeg  Sinorhizobium meliloti GR4
         smel  Sinorhizobium meliloti 2011
         smer  Sinorhizobium meliloti RMO17
         smd  Sinorhizobium medicae
         rhi  Sinorhizobium fredii NGR234
         sfh  Sinorhizobium fredii HH103
         sfd  Sinorhizobium fredii USDA 257
         six  Sinorhizobium sp. RAC02
         same  Sinorhizobium americanum
         sino  Sinorhizobium sp. CCBAU 05631
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Ensifer (4)
         ead  Ensifer adhaerens OV14
         eah  Ensifer adhaerens Casida A
         esj  Ensifer sojae
         eak  Ensifer alkalisoli
 
 
 
 
       Agrobacterium (10)
         atu  Agrobacterium fabrum
         ara  Agrobacterium radiobacter
         atf  Agrobacterium tumefaciens Ach5
         ata  Agrobacterium tumefaciens S33
         avi  Agrobacterium vitis
         agr  Agrobacterium sp. H13-3
         agc  Agrobacterium sp. RAC06
         aro  Agrobacterium rhizogenes
         agt  Agrobacterium sp. 33MFTa1.1
         alf  Agrobacterium larrymoorei
 
 
 
 
 
 
 
 
 
 
       Rhizobium (24)
         ret  Rhizobium etli CFN 42
         rec  Rhizobium etli CIAT 652
         rel  Rhizobium etli bv. mimosae Mim1
         rep  Rhizobium etli bv. phaseoli IE4803
         rei  Rhizobium sp. IE4771
         rle  Rhizobium leguminosarum bv. viciae 3841
         rlt  Rhizobium leguminosarum bv. trifolii WSM2304
         rlg  Rhizobium leguminosarum bv. trifolii WSM1325
         rlb  Rhizobium leguminosarum bv. trifolii WSM1689
         rlu  Rhizobium leguminosarum bv. trifolii CB782
         rtr  Rhizobium tropici
         rir  Rhizobium sp. IRBG74
         rhl  Rhizobium favelukesii
         rga  Rhizobium gallicum
         rhn  Rhizobium sp. N1341
         rpha  Rhizobium phaseoli
         rht  Rhizobium sp. NT-26
         rhx  Rhizobium sp. N731
         rhv  Rhizobium sp. S41
         rhk  Rhizobium sp. Kim5
         rez  Rhizobium esperanzae
         rjg  Rhizobium jaguaris
         rhr  Rhizobium sp. 11515TR
         rgr  Rhizobium grahamii
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Neorhizobium (4)
         ngl  Neorhizobium galegae bv. officinalis bv. officinalis HAMBI 1141
         ngg  Neorhizobium galegae bv. orientalis HAMBI 540
         neo  Neorhizobium sp. SOG26
         nen  Neorhizobium sp. NCHU2750
 
 
 
 
       Liberibacter (7)
         las  Candidatus Liberibacter asiaticus psy62
         laa  Candidatus Liberibacter asiaticus gxpsy
         lat  Candidatus Liberibacter asiaticus Ishi-1
         lso  Candidatus Liberibacter solanacearum
         lcc  Liberibacter crescens
         lar  Candidatus Liberibacter americanus
         lau  Candidatus Liberibacter africanus
 
 
 
 
 
 
 
       Shinella (1)
         shz  Shinella sp. HZN7
 
       Georhizobium (1)
         abaw  Georhizobium profundi
 
       Brucella (43)
         bme  Brucella melitensis bv. 1 16M
         bmel  Brucella melitensis bv. 1 16M
         bmi  Brucella melitensis ATCC 23457
         bmz  Brucella melitensis M28
         bmg  Brucella melitensis M5-90
         bmw  Brucella melitensis NI
         bmee  Brucella melitensis bv. 3 Ether
         bmf  Brucella abortus 2308
         bmb  Brucella abortus bv. 1 9-941
         bmc  Brucella abortus S19
         baa  Brucella abortus A13334
         babo  Brucella abortus bv. 2 86/8/59
         babr  Brucella abortus bv. 6 870
         babt  Brucella abortus 63 75
         babb  Brucella abortus BDW
         babu  Brucella abortus bv. 9 C68
         babs  Brucella abortus BER
         babc  Brucella abortus NCTC 10505
         bms  Brucella suis 1330
         bsi  Brucella suis 1330
         bsf  Brucella suis bv. 1
         bsui  Brucella suis bv. 2 Bs143CITA
         bsup  Brucella suis bv. 2 PT09143
         bsuv  Brucella suis bv. 2 PT09172
         bsuc  Brucella suis bv. 2 Bs364CITA
         bmt  Brucella suis ATCC 23445
         bsz  Brucella suis bv. 3
         bsv  Brucella suis VBI22
         bsw  Brucella suis ZW043
         bsg  Brucella suis ZW046
         bov  Brucella ovis
         bcs  Brucella canis ATCC 23365
         bsk  Brucella canis HSK A52141
         bol  Brucella canis Oliveri
         bcar  Brucella canis RM6/66
         bcas  Brucella canis SVA13
         bmr  Brucella microti
         bpp  Brucella pinnipedialis B2/94
         bpv  Brucella pinnipedialis 6/566
         bcet  Brucella ceti TE10759-12
         bcee  Brucella ceti TE28753-12
         bvl  Brucella vulpis
         bru  Brucella sp. 2002734562
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Ochrobactrum (4)
         oan  Ochrobactrum anthropi ATCC 49188
         oah  Ochrobactrum anthropi OAB
         ops  Ochrobactrum pseudogrignonense
         och  Ochrobactrum sp. A44
 
 
 
 
       Bradyrhizobium (17)
         bja  Bradyrhizobium diazoefficiens USDA 110
         bju  Bradyrhizobium japonicum USDA 6
         bjp  Bradyrhizobium japonicum E109
         bra  Bradyrhizobium sp. ORS 278
         bbt  Bradyrhizobium sp. BTAi1
         brs  Bradyrhizobium sp. S23321
         aol  Bradyrhizobium oligotrophicum
         brc  Bradyrhizobium sp. CCGE-LA001
         brad  Bradyrhizobium sp. BF49
         bic  Bradyrhizobium icense
         bro  Bradyrhizobium sp. ORS 285
         brk  Bradyrhizobium sp. SK17
         bot  Bradyrhizobium ottawaense
         brq  Bradyrhizobium amphicarpaeae
         bgq  Bradyrhizobium guangdongense
         bgz  Bradyrhizobium guangzhouense
         bsym  Bradyrhizobium symbiodeficiens
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Rhodopseudomonas (7)
         rpa  Rhodopseudomonas palustris CGA009
         rpb  Rhodopseudomonas palustris HaA2
         rpc  Rhodopseudomonas palustris BisB18
         rpd  Rhodopseudomonas palustris BisB5
         rpe  Rhodopseudomonas palustris BisA53
         rpt  Rhodopseudomonas palustris TIE-1
         rpx  Rhodopseudomonas palustris DX-1
 
 
 
 
 
 
 
       Nitrobacter (2)
         nwi  Nitrobacter winogradskyi
         nha  Nitrobacter hamburgensis
 
 
       Oligotropha (3)
         oca  Oligotropha carboxidovorans OM5 (Mississippi)
         ocg  Oligotropha carboxidovorans OM5 (Goettingen)
         oco  Oligotropha carboxidovorans OM4
 
 
 
       Bosea (5)
         bop  Bosea sp. PAMC 26642
         bos  Bosea sp. RAC05
         bvv  Bosea vaviloviae
         boi  Bosea sp. Tri-49
         bof  Bosea sp. F3-2
 
 
 
 
 
       Variibacter (1)
         vgo  Variibacter gotjawalensis
 
       Bartonella (21)
         bhe  Bartonella henselae Houston-1
         bhn  Bartonella henselae BM1374163
         bhs  Bartonella henselae BM1374165
         bqu  Bartonella quintana Toulouse
         bqr  Bartonella quintana RM-11
         bbk  Bartonella bacilliformis
         btr  Bartonella tribocorum CIP 105476
         btx  Bartonella tribocorum BM1374166
         bgr  Bartonella grahamii
         bcd  Bartonella clarridgeiae
         baus  Bartonella australis
         bvn  Bartonella vinsonii
         banc  Bartonella ancashensis
         bapi  Bartonella apis
         bart  Bartonella sp. JB15
         bara  Bartonella sp. A1379B
         barw  Bartonella sp. WD16.2
         barr  Bartonella sp. Raccoon60
         baro  Bartonella sp. 1-1C
         barj  Bartonella sp. JB63
         bez  Bartonella elizabethae
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Xanthobacter (1)
         xau  Xanthobacter autotrophicus
 
       Azorhizobium (1)
         azc  Azorhizobium caulinodans
 
       Starkeya (1)
         sno  Starkeya novella
 
       Labrys (1)
         lne  Labrys neptuniae
 
       Ancylobacter (1)
         anc  Ancylobacter sp. TS-1
 
       Methylorubrum (6)
         mex  Methylorubrum extorquens PA1
         mea  Methylorubrum extorquens AM1
         mdi  Methylorubrum extorquens DM4
         mch  Methylorubrum extorquens CM4
         mpo  Methylorubrum populi
         mza  Methylorubrum zatmanii
 
 
 
 
 
 
       Methylobacterium (12)
         mrd  Methylobacterium radiotolerans
         met  Methylobacterium sp. 4-46
         mno  Methylobacterium nodulans
         mor  Methylobacterium oryzae
         meta  Methylobacterium sp. AMS5
         maqu  Methylobacterium aquaticum
         mphy  Methylobacterium phyllosphaerae
         mee  Methylobacterium currus
         metd  Methylobacterium sp. DM1
         metx  Methylobacterium sp. XJLW
         mets  Methylobacterium sp. 17SD2-17
         meti  Methylobacterium sp. 17Sr1-43
 
 
 
 
 
 
 
 
 
 
 
 
       Microvirga (3)
         moc  Microvirga ossetica
         miv  Microvirga sp. 17 mud 1-3
         mico  Microvirga sp. HR1
 
 
 
       Beijerinckia (1)
         bid  Beijerinckia indica
 
       Methylocella (2)
         msl  Methylocella silvestris
         mtun  Methylocella tundrae
 
 
       Methylovirgula (1)
         mlg  Methylovirgula ligni
 
       Unclassified Beijerinckiaceae (1)
         bbar  Beijerinckiaceae bacterium RH AL1
 
       Chelatococcus (2)
         chel  Chelatococcus sp. CO-6
         cdq  Chelatococcus daeguensis
 
 
       Hyphomicrobium (4)
         hdn  Hyphomicrobium denitrificans ATCC 51888
         hdt  Hyphomicrobium denitrificans 1NES1
         hmc  Hyphomicrobium sp. MC1
         hni  Hyphomicrobium nitrativorans
 
 
 
 
       Rhodomicrobium (1)
         rva  Rhodomicrobium vannielii
 
       Pelagibacterium (1)
         phl  Pelagibacterium halotolerans
 
       Filomicrobium (2)
         fil  Candidatus Filomicrobium marinum W
         fiy  Candidatus Filomicrobium marinum Y
 
 
       Devosia (3)
         deq  Devosia sp. H5989
         dei  Devosia sp. I507
         dea  Devosia sp. Gsoil 520
 
 
 
       Blastochloris (2)
         bvr  Blastochloris viridis
         blag  Blastochloris sp. GI
 
 
       Rhodoplanes (1)
         rhz  Rhodoplanes sp. Z2-YC6860
 
       Maritalea (1)
         mmyr  Maritalea myrionectae
 
       Youhaiella (1)
         yti  Youhaiella tibetensis
 
       Methylocystis (5)
         msc  Methylocystis sp. SC2
         mbry  Methylocystis bryophila
         mros  Methylocystis rosea
         mhey  Methylocystis heyeri
         mpar  Methylocystis parvus
 
 
 
 
 
       Methylosinus (1)
         mtw  Methylosinus trichosporium
 
       Pleomorphomonas (1)
         pleo  Pleomorphomonas sp. SM30
 
       Martelella (3)
         mey  Martelella endophytica
         maad  Martelella sp. AD-3
         mmed  Martelella mediterranea
 
 
 
       Aureimonas (1)
         aua  Aureimonas sp. AU20
 
       Breoghania (1)
         brn  Breoghania sp. L-A4
 
       Hodgkinia (4)
         hci  Candidatus Hodgkinia cicadicola Dsem
         hct  Candidatus Hodgkinia cicadicola TETULN
         hcc  Candidatus Hodgkinia cicadicola TETUND1
         hcd  Candidatus Hodgkinia cicadicola TETUND2
 
 
 
 
       Methyloceanibacter (1)
         mcg  Methyloceanibacter caenitepidi
 
       Tokpelaia (1)
         thd  Candidatus Tokpelaia hoelldoblerii
 
       Pseudorhodoplanes (1)
         psin  Pseudorhodoplanes sinuspersici
 
       Hartmannibacter (1)
         hdi  Hartmannibacter diazotrophicus
 
       Unclassified Rhizobiales (1)
         rbm  Rhizobiales bacterium NRL2
 
       Caulobacter (8)
         ccr  Caulobacter vibrioides CB15
         ccs  Caulobacter vibrioides NA1000
         cak  Caulobacter sp. K31
         cse  Caulobacter segnis
         chq  Caulobacter henricii
         cmb  Caulobacter mirabilis
         cfh  Caulobacter flavus
         cauf  Caulobacter sp. FWC26
 
 
 
 
 
 
 
 
       Phenylobacterium (2)
         pzu  Phenylobacterium zucineum
         phb  Phenylobacterium sp. HYN0004
 
 
       Brevundimonas (8)
         bsb  Brevundimonas subvibrioides
         brd  Brevundimonas sp. DS20
         bne  Brevundimonas naejangsanensis
         brg  Brevundimonas sp. GW460-12-10-14-LB2
         brl  Brevundimonas sp. LM2
         bvc  Brevundimonas vesicularis
         bdm  Brevundimonas diminuta
         brf  Brevundimonas sp. MF30-B
 
 
 
 
 
 
 
 
       Asticcacaulis (1)
         aex  Asticcacaulis excentricus
 
       Unclassified Caulobacteraceae (1)
         cbot  Caulobacteraceae bacterium OTSz_A_272
 
       Ruegeria (5)
         sil  Ruegeria pomeroyi
         sit  Ruegeria sp. TM1040
         rue  Ruegeria sp. NKC1-1
         rua  Ruegeria sp. AD91A
         rut  Ruegeria sp. THAF33
 
 
 
 
 
       Epibacterium (1)
         rmb  Epibacterium mobile
 
       Rhodobacter (7)
         rsp  Rhodobacter sphaeroides 2.4.1
         rsh  Rhodobacter sphaeroides ATCC 17029
         rsq  Rhodobacter sphaeroides ATCC 17025
         rsk  Rhodobacter sphaeroides KD131
         rcp  Rhodobacter capsulatus
         rhp  Rhodobacter sp. LPB0142
         rbl  Rhodobacter blasticus
 
 
 
 
 
 
 
       Jannaschia (1)
         jan  Jannaschia sp. CCS1
 
       Roseobacter (2)
         rde  Roseobacter denitrificans
         rli  Roseobacter litoralis
 
 
       Paracoccus (12)
         pde  Paracoccus denitrificans
         pami  Paracoccus aminophilus
         pye  Paracoccus yeei
         pcon  Paracoccus contaminans
         pzh  Paracoccus zhejiangensis
         paro  Paracoccus sp. BM15
         paru  Paracoccus sp. CBA4604
         pamn  Paracoccus aminovorans
         pmut  Paracoccus mutanolyticus
         pars  Paracoccus sp. SC2-6
         parr  Paracoccus sp. Arc7-R13
         pkd  Paracoccus kondratievae
 
 
 
 
 
 
 
 
 
 
 
 
       Dinoroseobacter (1)
         dsh  Dinoroseobacter shibae
 
       Ketogulonicigenium (3)
         kvu  Ketogulonicigenium vulgare Y25
         kvl  Ketogulonicigenium vulgare WSH-001
         kro  Ketogulonicigenium robustum
 
 
 
       Pseudovibrio (1)
         psf  Pseudovibrio sp. FO-BEG1
 
       Phaeobacter (6)
         pga  Phaeobacter inhibens DSM 17395
         pgl  Phaeobacter inhibens 2.10
         pgd  Phaeobacter gallaeciensis DSM 26640
         php  Phaeobacter porticola
         ppic  Phaeobacter piscinae
         phq  Phaeobacter sp. LSS9
 
 
 
 
 
 
       Octadecabacter (4)
         oat  Octadecabacter antarcticus
         oar  Octadecabacter arcticus
         otm  Octadecabacter temperatus
         oct  Octadecabacter sp. SW4
 
 
 
 
       Leisingera (3)
         lmd  Leisingera methylohalidivorans
         lej  Leisingera sp. NJS204
         laqu  Leisingera aquaemixtae
 
 
 
       Roseibacterium (1)
         red  Roseibacterium elongatum
 
       Planktomarina (1)
         ptp  Planktomarina temperata
 
       Celeribacter (4)
         cid  Celeribacter indicus
         cmar  Celeribacter marinus
         ceh  Celeribacter ethanolicus
         cmag  Celeribacter manganoxidans
 
 
 
 
       Marinovum (1)
         malg  Marinovum algicola
 
       Confluentimicrobium (1)
         con  Confluentimicrobium sp. EMB200-NS6
 
       Rhodovulum (3)
         rsu  Rhodovulum sulfidophilum
         rhm  Rhodovulum sp. MB263
         rhc  Rhodovulum sp. P5
 
 
 
       Pannonibacter (1)
         pphr  Pannonibacter phragmitetus
 
       Halocynthiibacter (1)
         hat  Halocynthiibacter arcticus
 
       Labrenzia (4)
         lap  Labrenzia sp. CP4
         lagg  Labrenzia aggregata
         labr  Labrenzia sp. VG12
         labp  Labrenzia sp. PHM005
 
 
 
 
       Defluviimonas (1)
         daa  Defluviimonas alba
 
       Yangia (2)
         yan  Yangia sp. CCB-MM3
         ypac  Yangia pacifica
 
 
       Sulfitobacter (6)
         suam  Sulfitobacter sp. AM1-D1
         spse  Sulfitobacter pseudonitzschiae
         sulz  Sulfitobacter sp. SK012
         suli  Sulfitobacter sp. JL08
         suld  Sulfitobacter sp. D7
         sdo  Sulfitobacter donghicola
 
 
 
 
 
 
       Donghicola (1)
         don  Marivivens sp. JLT3646
 
       Salipiger (1)
         tpro  Salipiger profundus
 
       Tateyamaria (1)
         tom  Tateyamaria omphalii
 
       Pelagibaca (1)
         paby  Pelagibaca abyssi
 
       Thioclava (1)
         thw  Thioclava nitratireducens
 
       Roseovarius (3)
         rmm  Roseovarius mucosus
         rok  Roseovarius sp. AK1035
         rid  Roseovarius indicus
 
 
 
       Yoonia (1)
         lvs  Yoonia vestfoldensis
 
       Antarctobacter (1)
         aht  Antarctobacter heliothermus
 
       Rhodobaca (1)
         rbg  Rhodobaca barguzinensis
 
       Sagittula (1)
         sagu  Sagittula sp. P11
 
       Thalassococcus (1)
         thaa  Thalassococcus sp. S3
 
       Gemmobacter (1)
         geh  Gemmobacter sp. HYN0069
 
       Tabrizicola (1)
         taw  Tabrizicola sp. K13M18
 
       Silicimonas (1)
         salo  Silicimonas algicola
 
       Sedimentitalea (1)
         sedi  Sedimentitalea sp. W43
 
       Haematobacter (1)
         hml  Haematobacter massiliensis
 
       Boseongicola (1)
         boo  Boseongicola sp. CCM32
 
       Pseudorhodobacter (1)
         pseb  Pseudorhodobacter sp. S12M18
 
       Litoreibacter (1)
         lit  Litoreibacter sp. LN3S51
 
       Oceanicola (1)
         ocd  Oceanicola sp. D3
 
       Maribius (1)
         maru  Maribius sp. THAF1
 
       Roseivivax (1)
         rot  Roseivivax sp. THAF197b
 
       Unclassified Rhodobacteraceae (2)
         rbz  Rhodobacteraceae bacterium G7
         thas  Rhodobacteraceae bacterium SH-1
 
 
       Maricaulis (1)
         mmr  Maricaulis maris
 
       Hyphomonas (1)
         hne  Hyphomonas neptunium
 
       Hirschia (1)
         hba  Hirschia baltica
 
       Glycocaulis (1)
         gak  Glycocaulis alkaliphilus
 
       Hyphomonadaceae (1)
         hbc  Hyphomonadaceae bacterium UKL13-1
 
       Zymomonas (8)
         zmo  Zymomonas mobilis subsp. mobilis ZM4
         zmn  Zymomonas mobilis subsp. mobilis NCIMB 11163
         zmm  Zymomonas mobilis subsp. mobilis ATCC 10988
         zmb  Zymomonas mobilis subsp. mobilis ATCC 29191
         zmi  Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023
         zmc  Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023
         zmr  Zymomonas mobilis subsp. mobilis NRRL B-12526
         zmp  Zymomonas mobilis subsp. pomaceae ATCC 29192
 
 
 
 
 
 
 
 
       Novosphingobium (9)
         nar  Novosphingobium aromaticivorans
         npp  Novosphingobium sp. PP1Y
         npn  Novosphingobium pentaromativorans
         nre  Novosphingobium resinovorum
         nov  Novosphingobium sp. P6W
         not  Novosphingobium sp. THN1
         ntd  Novosphingobium tardaugens
         nor  Novosphingobium sp. ABRDHK2
         ngf  Novosphingobium ginsenosidimutans
 
 
 
 
 
 
 
 
 
       Sphingopyxis (11)
         sal  Sphingopyxis alaskensis
         sphk  Sphingopyxis fribergensis
         sphp  Sphingopyxis sp. 113P3
         smag  Sphingopyxis macrogoltabida EY-1
         smaz  Sphingopyxis macrogoltabida 203
         ster  Sphingopyxis terrae
         sgi  Sphingopyxis granuli
         sphl  Sphingopyxis sp. LPB0140
         sphq  Sphingopyxis sp. QXT-31
         spho  Sphingopyxis sp. MG
         sphu  Uncultured Sphingopyxis sp. UC10
 
 
 
 
 
 
 
 
 
 
 
       Sphingomonas (18)
         swi  Sphingomonas wittichii
         sphd  Sphingomonas wittichii DC-6
         sphm  Sphingomonas sp. MM-1
         stax  Sphingomonas taxi
         sphi  Sphingomonas hengshuiensis
         ssan  Sphingomonas sanxanigenens
         snj  Sphingomonas sp. NIC1
         smy  Sphingomonas melonis
         span  Sphingomonas panacis
         skr  Sphingomonas koreensis
         splm  Sphingomonas sp. LM7
         splk  Sphingomonas sp. LK11
         sphj  Sphingomonas sp. JJ-A5
         spkc  Sphingomonas sp. KC8
         sphc  Sphingomonas sp. Cra20
         sphf  Sphingomonas sp. FARSPH
         spha  Sphingomonas sp. YZ-8
         spau  Sphingomonas paucimobilis
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Sphingobium (14)
         sjp  Sphingobium japonicum
         sch  Sphingobium chlorophenolicum
         ssy  Sphingobium sp. SYK-6
         syb  Sphingobium sp. YBL2
         sbd  Sphingobium baderi
         spmi  Sphingobium sp. MI1205
         sphb  Sphingobium sp. EP60837
         sphr  Sphingobium sp. RAC03
         sinb  Sphingobium indicum
         spht  Sphingobium sp. TKS
         shyd  Sphingobium hydrophobicum
         sya  Sphingobium yanoikuyae
         sclo  Sphingobium cloacae
         spyg  Sphingobium sp. YG1
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Citromicrobium (1)
         cij  Citromicrobium sp. JL477
 
       Sphingorhabdus (3)
         sphg  Sphingorhabdus sp. M41
         sfla  Sphingorhabdus sp. SMR4y
         sphy  Sphingorhabdus sp. YGSMI21
 
 
 
       Blastomonas (2)
         blas  Blastomonas sp. RAC04
         bfw  Blastomonas fulva
 
 
       Rhizorhabdus (1)
         rdi  Rhizorhabdus dicambivorans
 
       Sphingosinicella (2)
         smic  Sphingosinicella microcystinivorans
         sphs  Sphingosinicella sp. BN140058
 
 
       Erythrobacter (7)
         eli  Erythrobacter litoralis HTCC2594
         elq  Erythrobacter litoralis DSM 8509
         ery  Erythrobacter atlanticus
         egn  Erythrobacter gangjinensis
         efv  Erythrobacter flavus
         erk  Erythrobacter sp. KY5
         err  Erythrobacter sp. YH-07
 
 
 
 
 
 
 
       Altererythrobacter (6)
         aay  Altererythrobacter atlanticus
         amx  Altererythrobacter marensis
         aep  Altererythrobacter epoxidivorans
         anh  Altererythrobacter namhicola
         ado  Altererythrobacter dongtanensis
         alb  Altererythrobacter sp. B11
 
 
 
 
 
 
       Croceicoccus (2)
         cna  Croceicoccus naphthovorans
         cman  Croceicoccus marinus
 
 
       Porphyrobacter (4)
         pns  Porphyrobacter neustonensis
         porl  Porphyrobacter sp. LM 6
         phz  Porphyrobacter sp. HT-58-2
         pot  Porphyrobacter sp. YT40
 
 
 
 
       Gluconobacter (5)
         gox  Gluconobacter oxydans 621H
         goh  Gluconobacter oxydans H24
         goy  Gluconobacter oxydans DSM 3504
         gal  Gluconobacter albidus
         gti  Gluconobacter thailandicus
 
 
 
 
 
       Granulobacter (4)
         gbe  Granulibacter bethesdensis CGDNIH1
         gbh  Granulibacter bethesdensis CGDNIH2
         gbc  Granulibacter bethesdensis NIH3.1
         gbs  Granulibacter bethesdensis CGDNIH4
 
 
 
 
       Acidiphilium (2)
         acr  Acidiphilium cryptum
         amv  Acidiphilium multivorum
 
 
       Gluconacetobacter (2)
         gdi  Gluconacetobacter diazotrophicus PA1 5 (Brazil)
         gdj  Gluconacetobacter diazotrophicus PA1 5 (JGI)
 
 
       Komagataeibacter (5)
         gxy  Komagataeibacter medellinensis
         gxl  Komagataeibacter xylinus
         kna  Komagataeibacter nataicola
         keu  Komagataeibacter europaeus
         ksc  Komagataeibacter saccharivorans
 
 
 
 
 
       Acetobacter (17)
         apt  Acetobacter pasteurianus IFO 3283-01
         apw  Acetobacter pasteurianus IFO 3283-01-42C
         apf  Acetobacter pasteurianus IFO 3283-03
         apu  Acetobacter pasteurianus IFO 3283-07
         apg  Acetobacter pasteurianus IFO 3283-12
         apq  Acetobacter pasteurianus IFO 3283-22
         apx  Acetobacter pasteurianus IFO 3283-26
         apz  Acetobacter pasteurianus IFO 3283-32
         apk  Acetobacter pasteurianus 386B
         asz  Acetobacter senegalensis
         asv  Acetobacter oryzifermentans
         aace  Acetobacter aceti
         aper  Acetobacter persici
         apom  Acetobacter pomorum
         ato  Acetobacter tropicalis
         aasc  Acetobacter ascendens
         acet  Acetobacter sp. JWB
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Asaia (1)
         abg  Asaia bogorensis
 
       Kozakia (1)
         kba  Kozakia baliensis
 
       Roseomonas (3)
         rgi  Roseomonas gilardii
         ros  Roseomonas sp. FDAARGOS_362
         rmuc  Roseomonas mucosa
 
 
 
       Neoasaia (1)
         nch  Neoasaia chiangmaiensis
 
       Commensalibacter (1)
         coq  Commensalibacter sp. AMU001
 
       Stella (1)
         shum  Stella humosa
 
       Neokomagataea (2)
         ntn  Neokomagataea tanensis
         neh  Neokomagataea sp. Ha5
 
 
       Swingsia (2)
         ssam  Swingsia samuiensis
         swf  Swingsia sp. F3b2
 
 
       Rhodospirillum (3)
         rru  Rhodospirillum rubrum ATCC 11170
         rrf  Rhodospirillum rubrum F11
         rce  Rhodospirillum centenum
 
 
 
       Pararhodospirillum (1)
         rpm  Pararhodospirillum photometricum
 
       Magnetospirillum (5)
         mag  Magnetospirillum magneticum
         mgy  Magnetospirillum gryphiswaldense MSR-1 v2
         mgry  Magnetospirillum gryphiswaldense MSR-1
         magx  Magnetospirillum sp. XM-1
         magn  Magnetospirillum sp. ME-1
 
 
 
 
 
       Azospirillum (10)
         azl  Azospirillum sp. B510
         ali  Azospirillum lipoferum
         abs  Azospirillum brasilense Sp245
         abq  Azospirillum brasilense Az39
         abf  Azospirillum brasilense Sp7
         ati  Azospirillum thiophilum
         ahu  Azospirillum humicireducens
         azt  Azospirillum sp. TSH58
         azm  Azospirillum sp. M2T2B2
         azz  Azospirillum sp. CFH 70021
 
 
 
 
 
 
 
 
 
 
       Tistrella (1)
         tmo  Tistrella mobilis
 
       Endolissoclinum (2)
         thal  Candidatus Endolissoclinum faulkneri L2
         efk  Candidatus Endolissoclinum faulkneri L5
 
 
       Thalassospira (3)
         txi  Thalassospira xiamenensis
         thac  Thalassospira marina
         tii  Thalassospira indica
 
 
 
       Magnetospira (1)
         magq  Magnetospira sp. QH-2
 
       Haematospirillum (1)
         hjo  Haematospirillum jordaniae
 
       Nitrospirillum (1)
         nao  Nitrospirillum amazonense
 
       Niveispirillum (1)
         ncb  Niveispirillum cyanobacteriorum
 
       Ferrovibrio (1)
         fer  Ferrovibrio sp. K5
 
       Parvularcula (1)
         pbr  Parvularcula bermudensis
 
       Magnetococcus (1)
         mgm  Magnetococcus marinus
 
       Pelagibacter (2)
         pub  Candidatus Pelagibacter ubique
         pel  Candidatus Pelagibacter sp. IMCC9063
 
 
       Unclassified Pelagibacteraceae (2)
         apc  Alpha proteobacterium HIMB59
         apm  Alpha proteobacterium HIMB5
 
 
       Emcibacter (1)
         ecog  Emcibacter congregatus
 
       Micavibrio (2)
         mai  Micavibrio aeruginosavorus ARL-13
         man  Micavibrio aeruginosavorus EPB
 
 
       Polymorphum (1)
         pgv  Polymorphum gilvum
 
       Phreatobacter (2)
         phr  Phreatobacter cathodiphilus
         pstg  Phreatobacter stygius
 
 
       Puniceispirillum (1)
         apb  Candidatus Puniceispirillum marinum
 
     Other proteobacteria (10)
       Acidithiobacillus (7)
         afe  Acidithiobacillus ferrooxidans ATCC 53993
         afr  Acidithiobacillus ferrooxidans ATCC 23270
         acu  Acidithiobacillus caldus SM-1
         acz  Acidithiobacillus caldus ATCC 51756
         afi  Acidithiobacillus ferrivorans
         afj  Acidithiobacillus ferridurans
         atx  Acidithiobacillus thiooxidans
 
 
 
 
 
 
 
       Mariprofundus (2)
         maes  Mariprofundus aestuarium
         mfn  Mariprofundus ferrinatatus
 
 
       Hydrogenophilus (1)
         htl  Hydrogenophilus thermoluteolus
 
     Firmicutes - Bacilli (772)
       Bacillus (135)
         bsu  Bacillus subtilis subsp. subtilis 168
         bsr  Bacillus subtilis subsp. subtilis RO-NN-1
         bsl  Bacillus subtilis subsp. subtilis BSP1
         bsh  Bacillus subtilis subsp. subtilis 6051-HGW
         bsy  Bacillus subtilis subsp. subtilis BAB-1
         bsut  Bacillus subtilis subsp. subtilis AG1839
         bsul  Bacillus subtilis subsp. subtilis JH642
         bsus  Bacillus subtilis subsp. subtilis OH 131.1
         bss  Bacillus subtilis subsp. spizizenii W23
         bst  Bacillus subtilis subsp. spizizenii TU-B-10
         bso  Bacillus subtilis subsp. natto BEST195
         bsn  Bacillus subtilis BSn5
         bsq  Bacillus subtilis QB928
         bsx  Bacillus subtilis XF-1
         bsp  Bacillus subtilis PY79
         bli  Bacillus licheniformis ATCC 14580
         bld  Bacillus licheniformis DSM 13 = ATCC 14580
         blh  Bacillus paralicheniformis
         bay  Bacillus velezensis FZB42
         baq  Bacillus velezensis CAU B946
         bya  Bacillus velezensis YAU B9601-Y2
         bamp  Bacillus velezensis AS43.3
         baml  Bacillus velezensis UCMB5036
         bama  Bacillus velezensis UCMB5033
         bamn  Bacillus velezensis UCMB5113
         bamb  Bacillus velezensis NAU-B3
         bamt  Bacillus velezensis TrigoCor1448
         bamy  Bacillus velezensis SQR9
         bmp  Bacillus velezensis
         bao  Bacillus amyloliquefaciens DSM 7
         baz  Bacillus amyloliquefaciens TA208
         bql  Bacillus amyloliquefaciens LL3
         bxh  Bacillus amyloliquefaciens XH7
         bqy  Bacillus amyloliquefaciens Y2
         bami  Bacillus amyloliquefaciens IT-45
         bamc  Bacillus amyloliquefaciens CC178
         bamf  Bacillus amyloliquefaciens LFB112
         bae  Bacillus atrophaeus 1942
         bvm  Bacillus vallismortis
         bha  Bacillus halodurans
         ban  Bacillus anthracis Ames
         bar  Bacillus anthracis Ames Ancestor
         bat  Bacillus anthracis Sterne
         bah  Bacillus anthracis CDC 684
         bai  Bacillus anthracis A0248
         bax  Bacillus anthracis H9401
         bant  Bacillus anthracis A16
         banr  Bacillus anthracis A16R
         bans  Bacillus anthracis SVA11
         banh  Bacillus anthracis HYU01
         banv  Bacillus anthracis Vollum
         bce  Bacillus cereus ATCC 14579
         bca  Bacillus cereus ATCC 10987
         bcz  Bacillus cereus E33L
         bcr  Bacillus cereus AH187
         bcb  Bacillus cereus B4264
         bcu  Bacillus cereus AH820
         bcg  Bacillus cereus G9842
         bcq  Bacillus cereus Q1
         bcx  Bacillus cereus 03BB102
         bal  Bacillus cereus biovar anthracis CI
         bnc  Bacillus cereus NC7401
         bcf  Bacillus cereus F837/76
         bcer  Bacillus cereus FRI-35
         bcef  Bacillus cereus FT9
         bcy  Bacillus cytotoxicus
         btk  Bacillus thuringiensis serovar konkukian 97-27
         btl  Bacillus thuringiensis Al Hakam
         btb  Bacillus thuringiensis BMB171
         btt  Bacillus thuringiensis serovar kurstaki HD73
         bthr  Bacillus thuringiensis serovar kurstaki YBT-1520
         bthi  Bacillus thuringiensis serovar kurstaki HD-1
         btc  Bacillus thuringiensis serovar chinensis CT-43
         btf  Bacillus thuringiensis serovar finitimus YBT-020
         btm  Bacillus thuringiensis MC28
         btg  Bacillus thuringiensis Bt407
         bti  Bacillus thuringiensis HD-771
         btn  Bacillus thuringiensis HD-789
         btht  Bacillus thuringiensis serovar thuringiensis IS5056
         bthu  Bacillus thuringiensis YBT-1518
         btw  Bacillus thuringiensis HD1011
         bthy  Bacillus thuringiensis YWC2-8
         bwe  Bacillus mycoides KBAB4
         bww  Bacillus mycoides WSBC 10204
         bmyo  Bacillus mycoides ATCC 6462
         bty  Bacillus toyonensis
         bmyc  Bacillus pseudomycoides 219298
         bby  Bacillus bombysepticus
         bwd  Bacillus wiedmannii
         bcl  Bacillus clausii
         bpu  Bacillus pumilus SAFR-032
         bpum  Bacillus pumilus MTCC B6033
         bpus  Bacillus pumilus SH-B9
         bpf  Bacillus pseudofirmus
         bmq  Bacillus megaterium QM B1551
         bmd  Bacillus megaterium DSM 319
         bmh  Bacillus megaterium WSH-002
         bmeg  Bacillus megaterium NBRC 15308 = ATCC 14581
         bco  Bacillus cellulosilyticus
         bck  Bacillus coagulans 2-6
         bag  Bacillus coagulans 36D1
         bcoa  Bacillus coagulans DSM 1 = ATCC 7050
         bjs  Bacillus sp. JS
         baci  Bacillus sp. 1NLA3E
         bif  Bacillus infantis
         ble  Bacillus lehensis
         bmet  Bacillus methanolicus
         gst  Bacillus sp. X1(2014)
         bacw  Bacillus sp. WP8
         bacp  Bacillus sp. Pc3
         bacb  Bacillus sp. BH072
         baco  Bacillus sp. OxB-1
         bacy  Bacillus sp. YP1
         bacl  Bacillus sp. BS34A
         balm  Bacillus sp. LM 4-2
         beo  Bacillus filamentosus
         bsm  Bacillus smithii
         bsj  Bacillus simplex
         bon  Bacillus oceanisediminis
         bgy  Bacillus glycinifermentans
         bfx  Bacillus flexus
         bgi  Bacillus gibsonii
         bwh  Bacillus weihaiensis
         bxi  Bacillus xiamenensis
         bhk  Bacillus horikoshii
         bkw  Bacillus krulwichiae
         bbev  Bacillus beveridgei
         bko  Bacillus kochii
         balt  Bacillus altitudinis
         bacs  Bacillus sp. SDLI1
         bmur  Bacillus muralis
         bsaf  Bacillus safensis
         bit  Bacillus intestinalis
         bacq  Bacillus sp. Y1
         bthv  Bacillus thermoamylovorans
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Oceanobacillus (2)
         oih  Oceanobacillus iheyensis
         ocn  Oceanobacillus sp. 160
 
 
       Geobacillus (18)
         gka  Geobacillus kaustophilus
         gte  Geobacillus thermoleovorans CCB_US3_UF5
         gtk  Geobacillus thermoleovorans KCTC 3570
         gtm  Geobacillus thermocatenulatus
         gli  Geobacillus lituanicus
         gtn  Geobacillus thermodenitrificans
         gwc  Geobacillus sp. WCH70
         gyc  Geobacillus sp. Y412MC61
         gya  Geobacillus sp. Y412MC52
         gct  Geobacillus sp. C56-T3
         gmc  Geobacillus sp. Y4.1MC1
         ggh  Geobacillus sp. GHH01
         gjf  Geobacillus genomosp. 3
         gea  Geobacillus sp. 12AMOR1
         gel  Geobacillus sp. LC300
         gse  Geobacillus stearothermophilus
         gsr  Geobacillus subterraneus
         gej  Geobacillus sp. JS12
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Parageobacillus (2)
         gth  Parageobacillus thermoglucosidasius C56-YS93
         ptl  Parageobacillus thermoglucosidasius DSM 2542
 
 
       Anoxybacillus (5)
         afl  Anoxybacillus flavithermus
         agn  Anoxybacillus gonensis
         anm  Anoxybacillus sp. B2M1
         aamy  Anoxybacillus amylolyticus
         anl  Anoxybacillus sp. B7M1
 
 
 
 
 
       Amphibacillus (1)
         axl  Amphibacillus xylanus
 
       Lysinibacillus (8)
         lsp  Lysinibacillus sphaericus
         lgy  Lysinibacillus varians
         lfu  Lysinibacillus fusiformis
         lys  Lysinibacillus sp. YS11
         lyb  Lysinibacillus sp. B2A1
         lyz  Lysinibacillus sp. 2017
         lyg  Lysinibacillus sp. SGAir0095
         lpak  Lysinibacillus pakistanensis
 
 
 
 
 
 
 
 
       Halobacillus (3)
         hhd  Halobacillus halophilus
         hmn  Halobacillus mangrovi
         hli  Halobacillus litoralis
 
 
 
       Terribacillus (1)
         tap  Terribacillus goriensis
 
       Virgibacillus (6)
         vir  Virgibacillus sp. SK37
         vhl  Virgibacillus halodenitrificans
         vig  Virgibacillus sp. 6R
         vil  Virgibacillus phasianinus
         vne  Virgibacillus necropolis
         vpn  Virgibacillus dokdonensis
 
 
 
 
 
 
       Lentibacillus (1)
         lao  Lentibacillus amyloliquefaciens
 
       Fictibacillus (2)
         fpn  Fictibacillus phosphorivorans
         far  Fictibacillus arsenicus
 
 
       Salimicrobium (1)
         sje  Salimicrobium jeotgali
 
       Aeribacillus (1)
         apak  Aeribacillus pallidus
 
       Aquibacillus (1)
         aqt  Aquibacillus sp. TKL69
 
       Psychrobacillus (2)
         psyh  Psychrobacillus sp. AK 1817
         psyo  Psychrobacillus sp. PB01
 
 
       Pradoshia (1)
         prd  Pradoshia sp. D12
 
       Gracilibacillus (1)
         grc  Gracilibacillus sp. SCU50
 
       Sporolactobacillus (1)
         stea  Sporolactobacillus terrae
 
       Unclassified Sporolactobacillaceae (1)
         bse  Bacillus selenitireducens
 
       Staphylococcus (89)
         sau  Staphylococcus aureus subsp. aureus N315 (MRSA/VSSA)
         sav  Staphylococcus aureus subsp. aureus Mu50 (MRSA/VISA)
         saw  Staphylococcus aureus subsp. aureus Mu3 (MRSA/hetero-VISA)
         sah  Staphylococcus aureus subsp. aureus JH1 (MRSA/VSSA)
         saj  Staphylococcus aureus subsp. aureus JH9 (MRSA/VISA)
         sam  Staphylococcus aureus subsp. aureus MW2 (CA-MRSA)
         sas  Staphylococcus aureus subsp. aureus MSSA476 (MSSA)
         sar  Staphylococcus aureus subsp. aureus MRSA252 (MRSA)
         sac  Staphylococcus aureus subsp. aureus COL (MRSA)
         sax  Staphylococcus aureus subsp. aureus USA300_TCH1516 (CA-MRSA)
         saa  Staphylococcus aureus subsp. aureus USA300_FPR3757 (CA-MRSA)
         sao  Staphylococcus aureus subsp. aureus NCTC8325
         sae  Staphylococcus aureus subsp. aureus Newman
         sad  Staphylococcus aureus subsp. aureus ED98
         suu  Staphylococcus aureus subsp. aureus M013 (CA-MRSA)
         suv  Staphylococcus aureus subsp. aureus VC40
         sue  Staphylococcus aureus subsp. aureus ED133
         suj  Staphylococcus aureus subsp. aureus JKD6159 (CA-MRSA)
         suk  Staphylococcus aureus subsp. aureus JKD6008 (MRSA/VISA)
         suc  Staphylococcus aureus subsp. aureus ECT-R 2
         sut  Staphylococcus aureus subsp. aureus T0131 (MRSA)
         suq  Staphylococcus aureus subsp. aureus TCH60
         suz  Staphylococcus aureus subsp. aureus 11819-97 (CA-MRSA)
         sud  Staphylococcus aureus subsp. aureus 71193 (MSSA)
         sux  Staphylococcus aureus subsp. aureus HO 5096 0412 (MRSA)
         suw  Staphylococcus aureus subsp. aureus TW20 (MRSA)
         sug  Staphylococcus aureus subsp. aureus ST398 (MRSA)
         suf  Staphylococcus aureus subsp. aureus LGA251 (MRSA)
         saua  Staphylococcus aureus subsp. aureus 55/2053
         saue  Staphylococcus aureus subsp. aureus 6850 (MSSA)
         saun  Staphylococcus aureus subsp. aureus CN1 (CA-MRSA)
         saus  Staphylococcus aureus subsp. aureus SA40 (CA-MRSA)
         sauu  Staphylococcus aureus subsp. aureus SA957 (CA-MRSA)
         saug  Staphylococcus aureus subsp. aureus SA268 (CA-MRSA)
         sauz  Staphylococcus aureus subsp. aureus Z172 (MRSA/VISA)
         saut  Staphylococcus aureus subsp. aureus ST228/10388 (MRSA)
         sauj  Staphylococcus aureus subsp. aureus ST228/10497 (MRSA)
         sauk  Staphylococcus aureus subsp. aureus ST228/15532 (MRSA)
         sauq  Staphylococcus aureus subsp. aureus ST228/16035 (MRSA)
         sauv  Staphylococcus aureus subsp. aureus ST228/18412 (MRSA)
         sauw  Staphylococcus aureus subsp. aureus ST228/16125 (MRSA)
         saux  Staphylococcus aureus subsp. aureus ST228/18341 (MRSA)
         sauy  Staphylococcus aureus subsp. aureus ST228/18583 (MRSA)
         sauf  Staphylococcus aureus subsp. aureus FDAARGOS_5
         sab  Staphylococcus aureus RF122
         suy  Staphylococcus aureus 04-02981 (MRSA)
         saub  Staphylococcus aureus 08BA02176 (LA-MRSA)
         saum  Staphylococcus aureus M1 (MRSA)
         sauc  Staphylococcus aureus CA-347 (MRSA)
         saur  Staphylococcus aureus Bmb9393 (MRSA)
         saui  Staphylococcus aureus USA300-ISMMS1 (MRSA)
         saud  Staphylococcus aureus 502A
         sams  Staphylococcus aureus MS4
         suh  Staphylococcus argenteus
         sep  Staphylococcus epidermidis ATCC 12228
         ser  Staphylococcus epidermidis RP62A (MRSE)
         sepp  Staphylococcus epidermidis PM221
         seps  Staphylococcus epidermidis SEI
         sha  Staphylococcus haemolyticus JCSC1435
         shh  Staphylococcus haemolyticus Sh29/312/L2
         ssp  Staphylococcus saprophyticus
         sca  Staphylococcus carnosus
         slg  Staphylococcus lugdunensis HKU09-01
         sln  Staphylococcus lugdunensis N920143
         ssd  Staphylococcus pseudintermedius HKU10-03
         sdt  Staphylococcus pseudintermedius ED99
         swa  Staphylococcus warneri
         spas  Staphylococcus pasteuri
         sxy  Staphylococcus xylosus HKUOPL8
         sxl  Staphylococcus xylosus SMQ-121
         sxo  Staphylococcus xylosus C2a
         shu  Staphylococcus hyicus
         scap  Staphylococcus capitis
         ssch  Staphylococcus schleiferi 1360-13
         sscz  Staphylococcus schleiferi 2317-03
         sagq  Staphylococcus agnetis
         seqo  Staphylococcus equorum
         ssif  Staphylococcus simulans
         scv  Staphylococcus condimenti
         spet  Staphylococcus pettenkoferi
         slz  Staphylococcus lutrae
         scoh  Staphylococcus cohnii
         sscu  Staphylococcus sciuri
         snl  Staphylococcus nepalensis
         skl  Staphylococcus kloosii
         sfq  Staphylococcus felis
         shom  Staphylococcus hominis
         smus  Staphylococcus muscae
         scar  Staphylococcus caprae
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Macrococcus (3)
         mcl  Macrococcus caseolyticus
         mcak  Macrococcus canis
         macr  Macrococcus sp. IME1552
 
 
 
       Salinicoccus (1)
         shv  Salinicoccus halodurans
 
       Auricoccucs (1)
         sbac  Auricoccus indicus
 
       Listeria (46)
         lmo  Listeria monocytogenes EGD-e (serotype 1/2a)
         lmn  Listeria monocytogenes 08-5578 (serotype 1/2a)
         lmy  Listeria monocytogenes 08-5923 (serotype 1/2a)
         lmt  Listeria monocytogenes 10403S (serotype 1/2a)
         lmoc  Listeria monocytogenes SLCC5850 (serotype 1/2a)
         lmoe  Listeria monocytogenes La111 (serotype 1/2a)
         lmob  Listeria monocytogenes N53-1 (serotype 1/2a)
         lmod  Listeria monocytogenes EGD (serotype 1/2a)
         lmow  Listeria monocytogenes WSLC1001 (serotype 1/2a)
         lmoq  Listeria monocytogenes 6179 (serotype 1/2a)
         lmr  Listeria monocytogenes R479a (serotype 1/2a)
         lmom  Listeria monocytogenes Lm60 (serotype 1/2a)
         lmf  Listeria monocytogenes F2365 (serotype 4b)
         lmc  Listeria monocytogenes CLIP 80459 (serotype 4b)
         lmog  Listeria monocytogenes serotype 4b LL195
         lmp  Listeria monocytogenes 07PF0776 (serotype 4b)
         lmol  Listeria monocytogenes L312 (serotype 4b)
         lmoj  Listeria monocytogenes J1816 (serotype 4b)
         lmoz  Listeria monocytogenes J1-220 (serotype 4b)
         lmox  Listeria monocytogenes WSLC1042 (serotype 4b)
         lmh  Listeria monocytogenes HCC23 (serotype 4a)
         lmq  Listeria monocytogenes M7 (serotype 4a)
         lml  Listeria monocytogenes L99 (serotype 4a)
         lmg  Listeria monocytogenes FSL R2-561
         lms  Listeria monocytogenes Finland 1998
         lmj  Listeria monocytogenes J0161
         lmw  Listeria monocytogenes SLCC2755 (serotype 1/2b)
         lmx  Listeria monocytogenes SLCC2372 (serotype 1/2c)
         lmz  Listeria monocytogenes serotype 7 SLCC2482
         lmon  Listeria monocytogenes SLCC2376 (serotype 4c)
         lmos  Listeria monocytogenes SLCC7179 (serotype 3a)
         lmoo  Listeria monocytogenes SLCC2378 (serotype 4e)
         lmoy  Listeria monocytogenes SLCC2479 (serotype 3c)
         lmot  Listeria monocytogenes SLCC2540 (serotype 3b)
         lmoa  Listeria monocytogenes ATCC 19117 (serotype 4d)
         lmok  Listeria monocytogenes NE dc2014
         lmv  Listeria monocytogenes CFSAN006122
         lin  Listeria innocua (serotype 6a)
         lwe  Listeria welshimeri
         lsg  Listeria seeligeri
         liv  Listeria ivanovii subsp. ivanovii PAM 55
         lii  Listeria ivanovii subsp. ivanovii WSLC 3010
         liw  Listeria ivanovii WSLC3009
         lia  Listeria ivanovii subsp. londoniensis WSLC 30167
         lio  Listeria ivanovii subsp. londoniensis WSLC 30151
         lwi  Listeria weihenstephanensis
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Brochothrix (1)
         bths  Brochothrix thermosphacta
 
       Exiguobacterium (5)
         esi  Exiguobacterium sibiricum
         eat  Exiguobacterium sp. AT1b
         ean  Exiguobacterium antarcticum
         exm  Exiguobacterium sp. MH3
         exu  Exiguobacterium sp. U13-1
 
 
 
 
 
       Gemella (3)
         got  Gemella sp. oral taxon 928
         gmo  Gemella morbillorum
         geq  Gemella sp. ND 6198
 
 
 
       Brevibacillus (4)
         bbe  Brevibacillus brevis
         blr  Brevibacillus laterosporus
         bfm  Brevibacillus formosus
         bagr  Brevibacillus agri
 
 
 
 
       Paenibacillus (44)
         pjd  Paenibacillus sp. JDR-2
         gym  Paenibacillus sp. Y412MC10
         ppy  Paenibacillus polymyxa E681
         ppm  Paenibacillus polymyxa SC2
         ppo  Paenibacillus polymyxa M1
         ppol  Paenibacillus polymyxa CR1
         ppq  Paenibacillus polymyxa SQR-21
         ppoy  Paenibacillus polymyxa Sb3-1
         pms  Paenibacillus mucilaginosus KNP414
         pmq  Paenibacillus mucilaginosus 3016
         pmw  Paenibacillus mucilaginosus K02
         pta  Paenibacillus terrae
         plv  Paenibacillus larvae
         psab  Paenibacillus sabinae
         pdu  Paenibacillus durus
         pbd  Paenibacillus borealis
         pgm  Paenibacillus graminis
         pod  Paenibacillus odorifer
         paen  Paenibacillus sp. FSL P4-0081
         paef  Paenibacillus sp. FSL R5-0345
         paeq  Paenibacillus sp. FSL R5-0912
         pste  Paenibacillus stellifer
         paea  Paenibacillus sp. FSL R7-0273
         paee  Paenibacillus sp. FSL R7-0331
         paeh  Paenibacillus sp. FSL H7-0357
         paej  Paenibacillus sp. FSL H7-0737
         pbj  Paenibacillus beijingensis
         pih  Paenibacillus sp. IHBB 10380
         pri  Paenibacillus riograndensis
         ppeo  Paenibacillus peoriae
         pnp  Paenibacillus naphthalenovorans
         pow  Paenibacillus sp. 32O-W
         pbv  Paenibacillus bovis
         pxl  Paenibacillus xylanexedens
         pyg  Paenibacillus yonginensis
         pswu  Paenibacillus swuensis
         pdh  Paenibacillus donghaensis
         pib  Paenibacillus ihbetae
         pcx  Paenibacillus crassostreae
         pkb  Paenibacillus kribbensis
         paih  Paenibacillus sp. IHB B 3084
         pvo  Paenibacillus vortex
         plw  Paenibacillus lautus
         plen  Paenibacillus lentus
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Thermobacillus (1)
         tco  Thermobacillus composti
 
       Aneurinibacillus (2)
         anx  Aneurinibacillus sp. XH2
         asoc  Aneurinibacillus soli
 
 
       Cohnella (2)
         coh  Cohnella candidum
         cohn  Cohnella sp. HS21
 
 
       Saccharibacillus (1)
         saca  Saccharibacillus sp. ATSA2
 
       Alicyclobacillus (2)
         aac  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
         aad  Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1
 
 
       Kyrpidia (2)
         bts  Kyrpidia tusciae
         kyr  Kyrpidia spormannii
 
 
       Tumebacillus (2)
         tum  Tumebacillus avium
         tab  Tumebacillus algifaecis
 
 
       Solibacillus (3)
         siv  Solibacillus silvestris StLB046
         ssil  Solibacillus silvestris DSM 12223
         sob  Solibacillus sp. R5-41
 
 
 
       Planococcus (11)
         pln  Planococcus sp. PAMC 21323
         pku  Planococcus kocurii
         prt  Planococcus rifietoensis
         pll  Planococcus versutus
         pana  Planococcus antarcticus
         pdg  Planococcus donghaensis
         phc  Planococcus halocryophilus
         pmar  Planococcus maritimus
         ppla  Planococcus plakortidis
         pfae  Planococcus faecalis
         plx  Planococcus sp. MB-3u-03
 
 
 
 
 
 
 
 
 
 
 
       Jeotgalibacillus (1)
         jeo  Jeotgalibacillus malaysiensis
 
       Kurthia (2)
         kur  Kurthia sp. 11kri321
         kzo  Kurthia zopfii
 
 
       Sporosarcina (6)
         spsy  Sporosarcina psychrophila
         spor  Sporosarcina sp. P33
         spop  Sporosarcina sp. P37
         sure  Sporosarcina ureae
         spos  Sporosarcina sp. PTS2304
         spae  Sporosarcina pasteurii
 
 
 
 
 
 
       Rummeliibacillus (1)
         rst  Rummeliibacillus stabekisii
 
       Paenisporosarcina (2)
         paek  Paenisporosarcina sp. K2R23-3
         panc  Paenisporosarcina antarctica
 
 
       Planomicrobium (1)
         pgq  Planomicrobium glaciei
 
       Novibacillus (1)
         ntr  Novibacillus thermophilus
 
       Laceyella (1)
         lfb  Laceyella sacchari
 
       Thermoactinomyces (1)
         tvu  Thermoactinomyces vulgaris
 
       Lactococcus (18)
         lla  Lactococcus lactis subsp. lactis Il1403
         llk  Lactococcus lactis subsp. lactis KF147
         llt  Lactococcus lactis subsp. lactis CV56
         lls  Lactococcus lactis subsp. lactis IO-1
         lld  Lactococcus lactis subsp. lactis KLDS 4.0325
         llx  Lactococcus lactis subsp. lactis NCDO 2118
         llc  Lactococcus lactis subsp. cremoris SK11
         llm  Lactococcus lactis subsp. cremoris MG1363
         llr  Lactococcus lactis subsp. cremoris A76
         lln  Lactococcus lactis subsp. cremoris NZ9000
         lli  Lactococcus lactis subsp. cremoris UC509.9
         llw  Lactococcus lactis subsp. cremoris KW2
         llj  Lactococcus lactis AI06
         lgr  Lactococcus garvieae ATCC 49156
         lgv  Lactococcus garvieae Lg2
         lpk  Lactococcus piscium
         lrn  Lactococcus raffinolactis
         lact  Lactococcus sp. 1JSPR-7
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Streptococcus (145)
         spy  Streptococcus pyogenes M1 GAS (serotype M1)
         spz  Streptococcus pyogenes MGAS5005 (serotype M1)
         spym  Streptococcus pyogenes M1 476 (serotype M1)
         spya  Streptococcus pyogenes A20 (serotype M1)
         spm  Streptococcus pyogenes MGAS8232 (serotype M18)
         spg  Streptococcus pyogenes MGAS315 (serotype M3)
         sps  Streptococcus pyogenes SSI-1 (serotype M3)
         sph  Streptococcus pyogenes MGAS10270 (serotype M2)
         spi  Streptococcus pyogenes MGAS10750 (serotype M4)
         spj  Streptococcus pyogenes MGAS2096 (serotype M12)
         spk  Streptococcus pyogenes MGAS9429 (serotype M12)
         spf  Streptococcus pyogenes Manfredo (serotype M5)
         spa  Streptococcus pyogenes MGAS10394 (serotype M6)
         spb  Streptococcus pyogenes MGAS6180 (serotype M28)
         stg  Streptococcus pyogenes MGAS15252 (serotype M59)
         stx  Streptococcus pyogenes MGAS1882 (serotype M59)
         soz  Streptococcus pyogenes NZ131 (serotype M49)
         stz  Streptococcus pyogenes Alab49 (serotype M53)
         spyh  Streptococcus pyogenes HSC5 (serotype M14)
         spyo  Streptococcus pyogenes STAB901 (serotype M44)
         spn  Streptococcus pneumoniae TIGR4 (virulent serotype 4)
         spd  Streptococcus pneumoniae D39 (virulent serotype 2)
         spr  Streptococcus pneumoniae R6 (avirulent serotype 2)
         spw  Streptococcus pneumoniae CGSP14 (serotype 14)
         sjj  Streptococcus pneumoniae JJA (serotype 14)
         snv  Streptococcus pneumoniae INV200 (serotype 14)
         spx  Streptococcus pneumoniae G54 (serotype 19F)
         snt  Streptococcus pneumoniae Taiwan19F-14 (serotype 19F)
         snd  Streptococcus pneumoniae ST556 (serotype 19F)
         spnn  Streptococcus pneumoniae A026 (serotype 19F)
         sne  Streptococcus pneumoniae ATCC 700669 (serotype 23F ST81 lineage)
         spv  Streptococcus pneumoniae Hungary19A 6 (serotype 19A)
         snc  Streptococcus pneumoniae TCH8431/19A (serotype 19A)
         snm  Streptococcus pneumoniae 70585 (serotype 5)
         spp  Streptococcus pneumoniae P1031 (serotype 1)
         sni  Streptococcus pneumoniae INV104 (serotype 1)
         spng  Streptococcus pneumoniae gamPNI0373 (virulent serotype 1)
         snb  Streptococcus pneumoniae 670-6B (serotype 6B)
         snp  Streptococcus pneumoniae AP200 (serotype 11A)
         snx  Streptococcus pneumoniae OXC141 (serotype 3)
         snu  Streptococcus pneumoniae SPNA45 (serotype 3)
         spne  Streptococcus pneumoniae SPN034156 (serotype 3)
         spnu  Streptococcus pneumoniae SPN034183 (serotype 3)
         spnm  Streptococcus pneumoniae SPN994038 (serotype 3)
         spno  Streptococcus pneumoniae SPN994039 (serotype 3)
         sag  Streptococcus agalactiae 2603 (serotype V)
         san  Streptococcus agalactiae NEM316 (serotype III)
         sak  Streptococcus agalactiae A909 (serotype Ia)
         sgc  Streptococcus agalactiae GD201008-001 (serotype Ia)
         sags  Streptococcus agalactiae SA20
         sagl  Streptococcus agalactiae 2-22 (serotype Ib)
         sagm  Streptococcus agalactiae 09mas018883
         sagi  Streptococcus agalactiae ILRI005
         sagr  Streptococcus agalactiae ILRI112
         sagp  Streptococcus agalactiae 138P
         sagc  Streptococcus agalactiae 138spar
         sagt  Streptococcus agalactiae COH1
         sage  Streptococcus agalactiae NGBS061
         sagg  Streptococcus agalactiae NGBS572
         sagn  Streptococcus agalactiae CNCTC 10/84
         smu  Streptococcus mutans UA159 (serotype c)
         smc  Streptococcus mutans NN2025 (serotype c)
         smut  Streptococcus mutans GS-5 (serotype c)
         smj  Streptococcus mutans LJ23 (serotype k)
         smua  Streptococcus mutans UA159-FR
         stc  Streptococcus thermophilus CNRZ1066
         stl  Streptococcus thermophilus LMG 18311
         ste  Streptococcus thermophilus LMD-9
         stn  Streptococcus thermophilus ND03
         stu  Streptococcus thermophilus JIM 8232
         stw  Streptococcus thermophilus MN-ZLW-002
         sthe  Streptococcus thermophilus ASCC 1275
         sths  Streptococcus thermophilus S9
         ssa  Streptococcus sanguinis
         ssb  Streptococcus suis BM407 (serotype 2)
         ssu  Streptococcus suis 05ZYH33 (serotype 2)
         ssv  Streptococcus suis 98HAH33 (serotype 2)
         ssi  Streptococcus suis P1/7 (serotype 2)
         sss  Streptococcus suis SC84 (serotype 2)
         ssf  Streptococcus suis A7 (serotype 2)
         ssw  Streptococcus suis GZ1 (serotype 2)
         sup  Streptococcus suis S735 (serotype 2)
         ssus  Streptococcus suis SC070731 (serotype 2)
         sst  Streptococcus suis ST3 (serotype 3)
         ssuy  Streptococcus suis YB51 (serotype 3)
         ssk  Streptococcus suis D12 (serotype 9)
         ssq  Streptococcus suis D9 (serotype 7)
         sui  Streptococcus suis JS14 (serotype 14)
         suo  Streptococcus suis SS12 (serotype 1/2)
         srp  Streptococcus suis ST1 (serotype 1)
         ssut  Streptococcus suis TL13 (serotype 16)
         ssui  Streptococcus suis T15
         sgo  Streptococcus gordonii
         sez  Streptococcus equi subsp. zooepidemicus MGCS10565
         seq  Streptococcus equi subsp. zooepidemicus H70
         sezo  Streptococcus equi subsp. zooepidemicus ATCC 35246
         sequ  Streptococcus equi subsp. zooepidemicus CY
         seu  Streptococcus equi subsp. equi 4047
         sub  Streptococcus uberis
         sds  Streptococcus dysgalactiae subsp. equisimilis GGS_124
         sdg  Streptococcus dysgalactiae subsp. equisimilis ATCC 12394
         sda  Streptococcus dysgalactiae subsp. equisimilis RE378
         sdc  Streptococcus dysgalactiae subsp. equisimilis AC-2713
         sdq  Streptococcus dysgalactiae subsp. equisimilis 167
         sga  Streptococcus gallolyticus UCN34
         sgg  Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069
         sgt  Streptococcus gallolyticus subsp. gallolyticus ATCC 43143
         smb  Streptococcus mitis
         sor  Streptococcus oralis
         stk  Streptococcus parauberis
         stb  Streptococcus pasteurianus
         scp  Streptococcus parasanguinis ATCC 15912
         scf  Streptococcus parasanguinis FW213
         ssr  Streptococcus salivarius CCHSS3
         stf  Streptococcus salivarius 57.I
         stj  Streptococcus salivarius JIM8777
         strs  Streptococcus salivarius NCTC 8618
         ssah  Streptococcus salivarius HSISS4
         std  Streptococcus pseudopneumoniae
         smn  Streptococcus macedonicus
         sif  Streptococcus infantarius
         sie  Streptococcus intermedius JTH08
         sib  Streptococcus intermedius B196
         siu  Streptococcus intermedius C270
         sang  Streptococcus anginosus C1051
         sanc  Streptococcus anginosus C238
         sans  Streptococcus anginosus SA1
         scg  Streptococcus constellatus subsp. pharyngis C1050
         scon  Streptococcus constellatus subsp. pharyngis C232
         scos  Streptococcus constellatus subsp. pharyngis C818
         soi  Streptococcus cristatus
         sik  Streptococcus iniae SF1
         siq  Streptococcus iniae ISET0901
         sio  Streptococcus iniae ISNO
         siz  Streptococcus iniae SFST01-82
         slu  Streptococcus lutetiensis
         sig  Streptococcus sp. I-G2
         sip  Streptococcus sp. I-P16
         stv  Streptococcus sp. VT 162
         spat  Streptococcus pantholopis
         stra  Streptococcus sp. A12
         strn  Streptococcus sp. NPS 308
         ssob  Streptococcus sobrinus
         srq  Streptococcus ruminantium
         seqi  Streptococcus equinus
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Lactobacillus (97)
         lpl  Lactobacillus plantarum WCFS1
         lpj  Lactobacillus plantarum JDM1
         lpt  Lactobacillus plantarum ZJ316
         lps  Lactobacillus plantarum subsp. plantarum ST-III
         lpr  Lactobacillus plantarum subsp. plantarum P-8
         lpz  Lactobacillus plantarum 16
         lpb  Lactobacillus plantarum B21
         ljo  Lactobacillus johnsonii NCC 533
         ljf  Lactobacillus johnsonii FI9785
         ljh  Lactobacillus johnsonii DPC 6026
         ljn  Lactobacillus johnsonii N6.2
         lac  Lactobacillus acidophilus NCFM
         lai  Lactobacillus acidophilus 30SC
         lad  Lactobacillus acidophilus La-14
         laf  Lactobacillus acidophilus FSI4
         lsa  Lactobacillus sakei
         lsl  Lactobacillus salivarius UCC118
         lsi  Lactobacillus salivarius CECT 5713
         lsj  Lactobacillus salivarius JCM1046
         ldb  Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842
         lbu  Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
         lde  Lactobacillus delbrueckii subsp. bulgaricus ND02
         ldl  Lactobacillus delbrueckii subsp. bulgaricus 2038
         lbr  Lactobacillus brevis ATCC 367
         lbk  Lactobacillus brevis KB290
         lca  Lactobacillus paracasei ATCC 334
         lcz  Lactobacillus paracasei Zhang
         lpq  Lactobacillus paracasei N1115
         lpi  Lactobacillus paracasei subsp. paracasei 8700:2
         lpap  Lactobacillus paracasei subsp. paracasei JCM 8130
         lcb  Lactobacillus casei BL23
         lcs  Lactobacillus casei BD-II
         lce  Lactobacillus casei LC2W
         lcw  Lactobacillus casei W56
         lcl  Lactobacillus casei LOCK919
         lcx  Lactobacillus casei 12A
         lga  Lactobacillus gasseri ATCC 33323
         lre  Lactobacillus reuteri DSM 20016
         lrf  Lactobacillus reuteri JCM 1112
         lru  Lactobacillus reuteri SD2112
         lrt  Lactobacillus reuteri I5007
         lrr  Lactobacillus reuteri TD1
         lhe  Lactobacillus helveticus DPC 4571
         lhl  Lactobacillus helveticus H10
         lhr  Lactobacillus helveticus R0052
         lhv  Lactobacillus helveticus CNRZ32
         lhh  Lactobacillus helveticus H9
         lhd  Lactobacillus helveticus KLDS1.8701
         lfe  Lactobacillus fermentum IFO 3956
         lfr  Lactobacillus fermentum CECT 5716
         lff  Lactobacillus fermentum F-6
         lrh  Lactobacillus rhamnosus GG
         lrg  Lactobacillus rhamnosus GG
         lrl  Lactobacillus rhamnosus Lc 705
         lra  Lactobacillus rhamnosus ATCC 8530
         lro  Lactobacillus rhamnosus LOCK900
         lrc  Lactobacillus rhamnosus LOCK908
         lcr  Lactobacillus crispatus
         lam  Lactobacillus amylovorus GRL 1112
         lay  Lactobacillus amylovorus GRL1118
         lbh  Lactobacillus buchneri NRRL B-30929
         lbn  Lactobacillus buchneri CD034
         lke  Lactobacillus kefiranofaciens
         lrm  Lactobacillus ruminis
         lsn  Lactobacillus sanfranciscensis
         law  Lactobacillus sp. wkB8
         lho  Lactobacillus hokkaidonensis
         lmu  Lactobacillus mucosae
         lae  Lactobacillus acetotolerans
         lgn  Lactobacillus ginsenosidimutans
         lko  Lactobacillus koreensis
         lhi  Lactobacillus heilongjiangensis
         lku  Lactobacillus kunkeei
         lgl  Lactobacillus gallinarum
         lpx  Lactobacillus paraplantarum
         lor  Lactobacillus oris
         lpar  Lactobacillus parabuchneri
         lle  Lactobacillus lindneri
         lpd  Lactobacillus paracollinoides
         lje  Lactobacillus jensenii
         lcu  Lactobacillus curieae
         lct  Lactobacillus crustorum
         lbt  Lactobacillus backii
         lcv  Lactobacillus curvatus
         lah  Lactobacillus amylophilus
         lamy  Lactobacillus amylolyticus
         lagl  Lactobacillus agilis
         lzy  Lactobacillus zymae
         lpg  Lactobacillus pentosus
         lcy  Lactobacillus coryniformis
         laca  Lactobacillus acidipiscis
         lalw  Lactobacillus allii
         lali  Lactobacillus alimentarius
         lpw  Lactobacillus paragasseri
         lfm  Lactobacillus farciminis
         lng  Lactobacillus nagelii
         ldx  Lactobacillus dextrinicus
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Pediococcus (6)
         ppe  Pediococcus pentosaceus ATCC 25745
         ppen  Pediococcus pentosaceus SL4
         pce  Pediococcus claussenii
         pdm  Pediococcus damnosus
         paci  Pediococcus acidilactici
         pio  Pediococcus inopinatus
 
 
 
 
 
 
       Enterococcus (22)
         efa  Enterococcus faecalis V583
         efl  Enterococcus faecalis 62
         efi  Enterococcus faecalis OG1RF
         efd  Enterococcus faecalis D32
         efs  Enterococcus faecalis Symbioflor 1
         efn  Enterococcus faecalis DENG1
         efq  Enterococcus faecalis ATCC 29212
         ene  Enterococcus faecalis 7L76
         efc  Enterococcus faecium Aus0004
         efau  Enterococcus faecium Aus0085
         efu  Enterococcus faecium DO
         efm  Enterococcus faecium ATCC 8459 = NRRL B-2354
         eft  Enterococcus faecium T110
         ehr  Enterococcus hirae
         ecas  Enterococcus casseliflavus
         emu  Enterococcus mundtii
         edu  Enterococcus durans
         ega  Enterococcus gallinarum
         ess  Enterococcus silesiacus
         eth  Enterococcus thailandicus
         egv  Enterococcus gilvus
         eav  Enterococcus avium
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Melissococcus (2)
         mps  Melissococcus plutonius ATCC 35311
         mpx  Melissococcus plutonius DAT561
 
 
       Tetragenococcus (4)
         thl  Tetragenococcus halophilus
         too  Tetragenococcus osmophilus
         tkr  Tetragenococcus koreensis
         tey  Tetragenococcus sp. YJ1
 
 
 
 
       Vagococcus (4)
         vte  Vagococcus teuberi
         vpi  Vagococcus penaei
         vac  Vagococcus sp. CF-49
         vao  Vagococcus sp. MN-17
 
 
 
 
       Oenococcus (3)
         ooe  Oenococcus oeni
         oen  Oenococcus sp. UCMA 16435
         osi  Oenococcus sicerae
 
 
 
       Leuconostoc (12)
         lme  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
         lmm  Leuconostoc mesenteroides subsp. mesenteroides J18
         lmk  Leuconostoc mesenteroides KFRI-MG
         lci  Leuconostoc citreum
         lki  Leuconostoc kimchii
         lec  Leuconostoc sp. C2
         lcn  Leuconostoc carnosum
         lgs  Leuconostoc gelidum subsp. gasicomitatum
         lge  Leuconostoc gelidum JB7
         llf  Leuconostoc lactis
         lgc  Leuconostoc garlicum
         lsu  Leuconostoc mesenteroides subsp. suionicum
 
 
 
 
 
 
 
 
 
 
 
 
       Weissella (9)
         wko  Weissella koreensis
         wce  Weissella ceti WS08
         wct  Weissella ceti WS74
         wci  Weissella ceti WS105
         wcb  Weissella cibaria
         wjo  Weissella jogaejeotgali
         wpa  Weissella paramesenteroides
         wcf  Weissella confusa
         wso  Weissella soli
 
 
 
 
 
 
 
 
 
       Aerococcus (7)
         aur  Aerococcus urinae ACS-120-V-Col10a
         aun  Aerococcus urinae CCUG36881
         aui  Aerococcus urinaeequi
         asan  Aerococcus sanguinicola
         acg  Aerococcus christensenii
         avs  Aerococcus viridans
         auh  Aerococcus urinaehominis
 
 
 
 
 
 
 
       Unclassified Aerococcaceae (1)
         abae  Aerococcaceae bacterium ZY16052
 
       Carnobacterium (5)
         crn  Carnobacterium sp. 17-4
         cml  Carnobacterium maltaromaticum
         caw  Carnobacterium inhibens
         carc  Carnobacterium sp. CP1
         cdj  Carnobacterium divergens
 
 
 
 
 
       Marinilactibacillus (1)
         marr  Marinilactibacillus sp. 15R
 
       Jeotgalibaca (3)
         jep  Jeotgalibaca sp. PTS2502
         jda  Jeotgalibaca dankookensis
         jeh  Jeotgalibaca sp. H21T32
 
 
 
       Dolosigranulum (1)
         dpm  Dolosigranulum pigrum
 
     Firmicutes - Clostridia (218)
       Clostridium (54)
         cac  Clostridium acetobutylicum ATCC 824
         cae  Clostridium acetobutylicum DSM 1731
         cay  Clostridium acetobutylicum EA 2018
         cpe  Clostridium perfringens 13
         cpf  Clostridium perfringens ATCC 13124
         cpr  Clostridium perfringens SM101
         ctc  Clostridium tetani E88
         ctet  Clostridium tetani 12124569
         cno  Clostridium novyi
         cbo  Clostridium botulinum A ATCC 3502
         cba  Clostridium botulinum A ATCC 19397
         cbh  Clostridium botulinum A Hall
         cby  Clostridium botulinum A2
         cbl  Clostridium botulinum A3 Loch Maree
         cbk  Clostridium botulinum B Eklund 17B (NRP)
         cbb  Clostridium botulinum B1 Okra
         cbi  Clostridium botulinum Ba4
         cbn  Clostridium botulinum BKT015925
         cbt  Clostridium botulinum E3
         cbf  Clostridium botulinum F Langeland
         cbm  Clostridium botulinum F 230613
         cbj  Clostridium botulinum H04402 065
         cbe  Clostridium beijerinckii NCIMB 8052
         cbz  Clostridium beijerinckii ATCC 35702
         cbei  Clostridium beijerinckii NCIMB 14988
         ckl  Clostridium kluyveri DSM 555
         ckr  Clostridium kluyveri NBRC 12016
         clj  Clostridium ljungdahlii
         ccb  Clostridium cellulovorans
         cls  Clostridium sp. SY8519
         clb  Clostridium sp. BNL1100
         csr  Clostridium saccharoperbutylacetonicum
         cpas  Clostridium pasteurianum BC1
         cpat  Clostridium pasteurianum DSM 525 = ATCC 6013
         cpae  Clostridium pasteurianum DSM 525 = ATCC 6013
         csb  Clostridium saccharobutylicum
         cah  Clostridium autoethanogenum
         clt  Clostridium bornimense
         cbv  Clostridium baratii
         csq  Clostridium scatologenes
         cld  Clostridium sporogenes
         cace  Clostridium aceticum
         cck  Clostridium carboxidivorans
         cbut  Clostridium butyricum
         ctyk  Clostridium tyrobutyricum
         ceu  Clostridium estertheticum
         ctae  Clostridium taeniosporum
         cfm  Clostridium formicaceticum
         cchv  Clostridium chauvoei
         carg  Clostridium argentinense
         cdrk  Clostridium drakei
         cia  Clostridium isatidis
         csep  Clostridium septicum
         cdy  Clostridium diolis
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Alkaliphilus (2)
         amt  Alkaliphilus metalliredigens
         aoe  Alkaliphilus oremlandii
 
 
       Arthromitus (4)
         asf  Candidatus Arthromitus sp. SFB-mouse-Japan
         asm  Candidatus Arthromitus sp. SFB-mouse-Yit
         aso  Candidatus Arthromitus sp. SFB-mouse-NL
         asb  Candidatus Arthromitus sp. SFB-rat-Yit
 
 
 
 
       Geosporobacter (1)
         gfe  Geosporobacter ferrireducens
 
       Hathewaya (1)
         hhw  Hathewaya histolytica
 
       Caloramator (1)
         cale  Caloramator sp. E03
 
       Crassaminicella (1)
         crs  Crassaminicella sp. SY095
 
       Mageeibacillus (1)
         clo  Mageeibacillus indolicus
 
       Fastidiosipila (1)
         fsa  Fastidiosipila sanguinis
 
       Hungateiclostridium (4)
         cth  Hungateiclostridium thermocellum ATCC 27405
         ctx  Hungateiclostridium thermocellum DSM 1313
         ccl  Hungateiclostridium clariflavum
         hsc  Hungateiclostridium saccincola
 
 
 
 
       Unclassified Hungateiclostridiaceae (1)
         ruk  Hungateiclostridiaceae bacterium KB18
 
       Ruminiclostridium (1)
         cce  Ruminiclostridium cellulolyticum
 
       Thermoclostridium (2)
         css  Thermoclostridium stercorarium subsp. stercorarium DSM 8532
         csd  Thermoclostridium stercorarium subsp. stercorarium DSM 8532
 
 
       Pseudoclostridium (1)
         cthd  Pseudoclostridium thermosuccinogenes
 
       Unclassified Ruminococcaceae (4)
         esr  Eubacterium siraeum V10Sc8a
         esu  Eubacterium siraeum 70/3
         ccel  Clostridium cellulosi
         rbp  Ruminococcaceae bacterium CPB6
 
 
 
 
       Flavonifractor (1)
         fpla  Flavonifractor plautii
 
       Ethanoligenens (1)
         eha  Ethanoligenens harbinense
 
       Ruminococcus (5)
         ral  Ruminococcus albus
         rch  Ruminococcus champanellensis
         rum  Ruminococcus sp. SR1/5
         rus  Ruminococcus bicirculans
         ruj  Ruminococcus sp. JE7A12
 
 
 
 
 
       Faecalibacterium (2)
         fpr  Faecalibacterium prausnitzii L2-6
         fpa  Faecalibacterium prausnitzii SL3/3
 
 
       Caproiciproducens (1)
         capr  Caproiciproducens sp. NJN-50
 
       Butyrivibrio (3)
         bpb  Butyrivibrio proteoclasticus
         bfi  Butyrivibrio fibrisolvens
         bhu  Butyrivibrio hungatei
 
 
 
       Cellulosilyticum (1)
         cle  Cellulosilyticum lentocellum
 
       Roseburia (3)
         rho  Roseburia hominis
         rix  Roseburia intestinalis XB6B4
         rim  Roseburia intestinalis M50/1
 
 
 
       Coprococcus (2)
         coo  Coprococcus sp. ART55/1
         cct  Coprococcus catus
 
 
       Blautia (7)
         rob  Blautia obeum
         byl  Blautia sp. YL58
         rto  Ruminococcus torques
         bhan  Blautia hansenii
         blau  Blautia sp. N6H1-15
         bpro  Blautia producta
         blab  Blautia sp. SC05B48
 
 
 
 
 
 
 
       Lachnoclostridium (5)
         cpy  Lachnoclostridium phytofermentans
         lacy  Lachnoclostridium sp. YL32
         csh  Clostridium saccharolyticum WM1
         cso  Clostridium cf. saccharolyticum K10
         cbol  Clostridium bolteae
 
 
 
 
 
       Anaerostipes (2)
         bprl  Anaerostipes hadrus
         arf  Anaerostipes rhamnosivorans
 
 
       Herbinix (1)
         hsd  Herbinix luporum
 
       Anaerotignum (1)
         cpro  Anaerotignum propionicum
 
       Lachnoanaerobaculum (1)
         lua  Lachnoanaerobaculum umeaense
 
       Anaerobutyricum (1)
         ehl  Anaerobutyricum hallii
 
       Pseudobutyrivibrio (1)
         pxv  Pseudobutyrivibrio xylanivorans
 
       Unclassified Lachnospiraceae (4)
         ere  Eubacterium rectale ATCC 33656
         ert  Eubacterium rectale DSM 17629
         era  Eubacterium rectale M104/1
         lbw  Lachnospiraceae bacterium oral taxon 500
 
 
 
 
       Clostridioides (5)
         cdf  Clostridioides difficile 630
         pdc  Clostridioides difficile 630
         cdc  Clostridioides difficile CD196
         cdl  Clostridioides difficile R20291
         pdf  Clostridioides difficile 630Derm
 
 
 
 
 
       Peptoclostridium (1)
         eac  Peptoclostridium acidaminophilum
 
       Acetoanaerobium (1)
         cst  Acetoanaerobium sticklandii
 
       Filifactor (1)
         faa  Filifactor alocis
 
       Paeniclostridium (1)
         psor  Paeniclostridium sordellii
 
       Unclassified Peptostreptococcaceae (1)
         pbq  Peptostreptococcaceae bacterium oral taxon 929
 
       Symbiobacterium (1)
         sth  Symbiobacterium thermophilum
 
       Syntrophomonas (1)
         swo  Syntrophomonas wolfei
 
       Syntrophothermus (1)
         slp  Syntrophothermus lipocalidus
 
       Desulfitobacterium (5)
         dsy  Desulfitobacterium hafniense Y51
         dhd  Desulfitobacterium hafniense DCB-2
         ddh  Desulfitobacterium dehalogenans
         ddl  Desulfitobacterium dichloroeliminans
         dmt  Desulfitobacterium metallireducens
 
 
 
 
 
       Desulfotomaculum (4)
         drm  Desulfotomaculum reducens
         dca  Desulfotomaculum nigrificans
         dru  Desulfotomaculum ruminis
         dfg  Desulfotomaculum ferrireducens
 
 
 
 
       Desulfofarcimen (1)
         dae  Desulfofarcimen acetoxidans
 
       Desulfofundulus (1)
         dku  Desulfofundulus kuznetsovii
 
       Desulfallas (1)
         dgi  Desulfallas gibsoniae
 
       Pelotomaculum (1)
         pth  Pelotomaculum thermopropionicum
 
       Desulforudis (1)
         dau  Candidatus Desulforudis audaxviator
 
       Thermincola (1)
         tjr  Thermincola potens
 
       Syntrophobotulus (1)
         sgy  Syntrophobotulus glycolicus
 
       Desulfosporosinus (3)
         dor  Desulfosporosinus orientis
         dai  Desulfosporosinus acidiphilus
         dmi  Desulfosporosinus meridiei
 
 
 
       Dehalobacter (3)
         ded  Dehalobacter sp. DCA
         dec  Dehalobacter sp. CF
         drs  Dehalobacter restrictus
 
 
 
       Heliobacterium (1)
         hmo  Heliobacterium modesticaldum
 
       Heliorestis (1)
         hcv  Heliorestis convoluta
 
       Eubacterium (3)
         eel  Eubacterium eligens
         elm  Eubacterium limosum
         emt  Eubacterium maltosivorans
 
 
 
       Acetobacterium (1)
         awo  Acetobacterium woodii
 
       Oscillibacter (1)
         ova  Oscillibacter valericigenes
 
       Dysosmobacter (1)
         obj  Oscillospiraceae bacterium J115
 
       Thermaerobacter (2)
         tmr  Thermaerobacter marianensis
         thef  Thermaerobacter sp. FW80
 
 
       Sulfobacillus (3)
         say  Sulfobacillus acidophilus TPY
         sap  Sulfobacillus acidophilus DSM 10332
         sthr  Sulfobacillus thermotolerans
 
 
 
       Carboxydocella (1)
         cthm  Carboxydocella thermautotrophica
 
       Christensenella (1)
         cmiu  Christensenella minuta
 
       Intestinimonas (1)
         ibu  Intestinimonas butyriciproducens
 
       Mogibacterium (1)
         mdv  Mogibacterium diversum
 
       Aminipila (1)
         amij  Aminipila sp. JN-39
 
       Unclassified Clostridiales (4)
         euu  Eubacterium sulci
         bprm  Butyrate-producing bacterium SM4/1
         bprs  Butyrate-producing bacterium SS3/4
         cbar  Clostridiales bacterium 70B-A
 
 
 
 
       Caldanaerobacter (1)
         tte  Caldanaerobacter subterraneus subsp. tengcongensis
 
       Thermoanaerobacter (8)
         tex  Thermoanaerobacter sp. X514
         thx  Thermoanaerobacter sp. X513
         tpd  Thermoanaerobacter pseudethanolicus
         tit  Thermoanaerobacter italicus
         tmt  Thermoanaerobacter mathranii
         tbo  Thermoanaerobacter brockii
         twi  Thermoanaerobacter wiegelii
         tki  Thermoanaerobacter kivui
 
 
 
 
 
 
 
 
       Carboxydothermus (1)
         chy  Carboxydothermus hydrogenoformans
 
       Tepidanaerobacter (2)
         tep  Tepidanaerobacter acetatoxydans Re1
         tae  Tepidanaerobacter acetatoxydans Re1
 
 
       Moorella (1)
         mta  Moorella thermoacetica
 
       Ammonifex (1)
         adg  Ammonifex degensii
 
       Thermacetogenium (1)
         tpz  Thermacetogenium phaeum
 
       Caldicellulosiruptor (9)
         csc  Caldicellulosiruptor saccharolyticus
         ate  Caldicellulosiruptor bescii
         cob  Caldicellulosiruptor obsidiansis
         chd  Caldicellulosiruptor hydrothermalis
         cow  Caldicellulosiruptor owensensis
         cki  Caldicellulosiruptor kristjanssonii
         ckn  Caldicellulosiruptor kronotskyensis
         clc  Caldicellulosiruptor lactoaceticus
         ccha  Caldicellulosiruptor changbaiensis
 
 
 
 
 
 
 
 
 
       Thermosediminibacter (1)
         toc  Thermosediminibacter oceani
 
       Thermoanaerobacterium (4)
         ttm  Thermoanaerobacterium thermosaccharolyticum DSM 571
         tto  Thermoanaerobacterium thermosaccharolyticum M0795
         txy  Thermoanaerobacterium xylanolyticum
         tsh  Thermoanaerobacterium saccharolyticum
 
 
 
 
       Thermodesulfobium (2)
         tnr  Thermodesulfobium narugense
         taci  Thermodesulfobium acidiphilum
 
 
       Mahella (1)
         mas  Mahella australiensis
 
       Natranaerobius (1)
         nth  Natranaerobius thermophilus
 
       Halothermothrix (1)
         hor  Halothermothrix orenii
 
       Halanaerobium (2)
         has  Halanaerobium hydrogeniformans
         hpk  Halanaerobium praevalens
 
 
       Halocella (1)
         hals  Halocella sp. SP3-1
 
       Acetohalobium (1)
         aar  Acetohalobium arabaticum
 
       Halobacteroides (1)
         hhl  Halobacteroides halobius
 
       Anoxybacter (1)
         aft  Anoxybacter fermentans
 
     Firmicutes - Others (38)
       Finegoldia (1)
         fma  Finegoldia magna
 
       Anaerococcus (1)
         apr  Anaerococcus prevotii
 
       Parvimonas (1)
         pmic  Parvimonas micra
 
       Peptoniphilus (2)
         ped  Peptoniphilus sp. ING2-D1G
         phar  Peptoniphilus harei
 
 
       Gottschalkia (1)
         cad  Gottschalkia acidurici
 
       Sporanaerobacter (1)
         spoa  Sporanaerobacter sp. NJN-17
 
       Veillonella (4)
         vpr  Veillonella parvula
         vat  Veillonella atypica
         vrm  Veillonella rodentium
         vdn  Veillonella dispar
 
 
 
 
       Megasphaera (3)
         med  Megasphaera elsdenii
         mhw  Megasphaera hexanoica
         meg  Megasphaera sp. AJH120
 
 
 
       Dialister (1)
         dpn  Dialister pneumosintes
 
       Selenomonas (5)
         ssg  Selenomonas sputigena
         sri  Selenomonas ruminantium
         sele  Selenomonas sp. oral taxon 478
         selo  Selenomonas sp. oral taxon 136
         selt  Selenomonas sp. oral taxon 920
 
 
 
 
 
       Megamonas (1)
         mhg  Megamonas hypermegale
 
       Pelosinus (2)
         puf  Pelosinus sp. UFO1
         pft  Pelosinus fermentans
 
 
       Methylomusa (1)
         mana  Methylomusa anaerophila
 
       Sporomusa (1)
         sted  Sporomusa termitida
 
       Acidaminococcus (2)
         afn  Acidaminococcus fermentans
         ain  Acidaminococcus intestini
 
 
       Phascolarctobacterium (1)
         pfac  Phascolarctobacterium faecium
 
       Erysipelothrix (4)
         erh  Erysipelothrix rhusiopathiae Fujisawa
         ers  Erysipelothrix rhusiopathiae SY1027
         erl  Erysipelothrix larvae
         eri  Erysipelothrix sp. 15TAL0474
 
 
 
 
       Faecalitalea (1)
         euc  Faecalitalea cylindroides
 
       Turicibacter (1)
         tur  Turicibacter sp. H121
 
       Faecalibaculum (1)
         fro  Faecalibaculum rodentium
 
       Unclassified Erysipelotrichaceae (2)
         erb  Erysipelotrichaceae bacterium I46
         ebm  Erysipelotrichaceae bacterium SG0102
 
 
       Limnochorda (1)
         lpil  Limnochorda pilosa
 
     Coprothermobacterota (1)
       Coprothermobacter (1)
         cpo  Coprothermobacter proteolyticus
 
     Tenericutes (149)
       Mycoplasma (94)
         mge  Mycoplasma genitalium G37
         mgu  Mycoplasma genitalium M2288
         mgc  Mycoplasma genitalium M2321
         mgq  Mycoplasma genitalium M6282
         mgx  Mycoplasma genitalium M6320
         mpn  Mycoplasma pneumoniae M129
         mpm  Mycoplasma pneumoniae 309
         mpj  Mycoplasma pneumoniae FH
         mpb  Mycoplasma pneumoniae M129-B7
         mpu  Mycoplasma pulmonis
         mpe  Mycoplasma penetrans
         mga  Mycoplasma gallisepticum R(low)
         mgh  Mycoplasma gallisepticum R(high)
         mgf  Mycoplasma gallisepticum F
         mgn  Mycoplasma gallisepticum NC06_2006.080-5-2P
         mgs  Mycoplasma gallisepticum NC95_13295-2-2P
         mgt  Mycoplasma gallisepticum NY01_2001.047-5-1P
         mgv  Mycoplasma gallisepticum VA94_7994-1-7P
         mgw  Mycoplasma gallisepticum WI01_2001.043-13-2P
         mgac  Mycoplasma gallisepticum CA06_2006.052-5-2P
         mgan  Mycoplasma gallisepticum NC08_2008.031-4-3P
         mgnc  Mycoplasma gallisepticum NC96_1596-4-2P
         mgz  Mycoplasma gallisepticum S6
         mmy  Mycoplasma mycoides subsp. mycoides SC PG1
         mmym  Mycoplasma mycoides subsp. mycoides SC Gladysdale
         mmyi  Mycoplasma mycoides subsp. mycoides izsam_mm5713
         mml  Mycoplasma mycoides subsp. capri LC 95010
         mcp  Mycoplasma capricolum subsp. capricolum ATCC 27343
         mcac  Mycoplasma capricolum subsp. capripneumoniae 9231-Abomsa
         mcap  Mycoplasma capricolum subsp. capripneumoniae F38
         mcar  Mycoplasma capricolum subsp. capripneumoniae ILRI181
         mcai  Mycoplasma capricolum subsp. capripneumoniae 87001
         mlc  Mycoplasma leachii PG50
         mlh  Mycoplasma leachii 99/014/6
         mmo  Mycoplasma mobile
         mhy  Mycoplasma hyopneumoniae 232
         mhj  Mycoplasma hyopneumoniae J
         mhp  Mycoplasma hyopneumoniae 7448
         mhn  Mycoplasma hyopneumoniae 168
         mhyl  Mycoplasma hyopneumoniae 168-L
         mhyo  Mycoplasma hyopneumoniae 7422
         msy  Mycoplasma synoviae 53
         mso  Mycoplasma synoviae ATCC 25204
         maa  Mycoplasma agalactiae PG2
         mal  Mycoplasma agalactiae 5632
         mat  Mycoplasma arthritidis
         mco  Mycoplasma conjunctivae
         mho  Mycoplasma hominis ATCC 23114
         mhom  Mycoplasma hominis ATCC 27545
         mcd  Mycoplasma crocodyli
         mhr  Mycoplasma hyorhinis HUB-1
         mhh  Mycoplasma hyorhinis GDL-1
         mhm  Mycoplasma hyorhinis MCLD
         mhs  Mycoplasma hyorhinis SK76
         mhv  Mycoplasma hyorhinis DBS 1050
         mfr  Mycoplasma fermentans JER
         mfm  Mycoplasma fermentans M64
         mfp  Mycoplasma fermentans PG18
         mbv  Mycoplasma bovis PG45
         mbh  Mycoplasma bovis Hubei-1
         mbi  Mycoplasma bovis HB0801
         mbq  Mycoplasma bovis CQ-W70
         mha  Mycoplasma haemofelis Langford 1
         mhf  Mycoplasma haemofelis Ohio2
         mss  Mycoplasma suis Illinois
         msk  Mycoplasma suis KI3806
         mpf  Mycoplasma putrefaciens KS1
         mput  Mycoplasma putrefaciens Mput9231
         mhe  Mycoplasma haemocanis
         mwe  Mycoplasma wenyonii
         mhl  Candidatus Mycoplasma haemolamae
         mcy  Mycoplasma cynos
         mhb  Candidatus Mycoplasma haemominutum
         mpv  Mycoplasma parvum
         mov  Mycoplasma ovis
         mbc  Mycoplasma bovoculi
         mcr  Mycoplasma californicum ST-6
         mcm  Mycoplasma californicum HAZ160_1
         mgj  Candidatus Mycoplasma girerdii
         mfq  Mycoplasma flocculare
         mcan  Mycoplasma canadense
         myt  Mycoplasma yeatsii
         mds  Mycoplasma dispar
         mgb  Mycoplasma gallinaceum
         mcas  Mycoplasma canis LV
         mck  Mycoplasma canis PG 14
         marg  Mycoplasma arginini
         myg  Mycoplasma sp. (ex Biomphalaria glabrata)
         mpul  Mycoplasma pullorum
         mbov  Mycoplasma bovigenitalium
         mpho  Mycoplasma phocidae
         mhyv  Mycoplasma hyosynoviae
         mboh  Mycoplasma bovirhinis
         mclo  Mycoplasma cloacale
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Ureaplasma (4)
         uur  Ureaplasma parvum serovar 3 ATCC 700970
         upa  Ureaplasma parvum serovar 3 ATCC 27815
         upr  Ureaplasma parvum serovar 3 SV3F4
         uue  Ureaplasma urealyticum
 
 
 
 
       Hepatoplasma (1)
         hcr  Candidatus Hepatoplasma crinochetorum
 
       Phytoplasma (8)
         poy  Onion yellows phytoplasma OY-M
         ayw  Aster yellows witches'-broom phytoplasma AYWB
         mbp  Maize bushy stunt phytoplasma
         pml  Candidatus Phytoplasma mali
         pal  Candidatus Phytoplasma australiense
         nzs  Strawberry lethal yellows phytoplasma (CPA) NZSb11
         psol  Candidatus Phytoplasma solani
         pzi  Candidatus Phytoplasma ziziphi
 
 
 
 
 
 
 
 
       Acholeplasma (5)
         acl  Acholeplasma laidlawii
         abra  Acholeplasma brassicae
         apal  Acholeplasma palmae
         aoc  Acholeplasma oculi
         aaxa  Acholeplasma axanthum
 
 
 
 
 
       Mesoplasma (8)
         mfl  Mesoplasma florum L1
         mfw  Mesoplasma florum W37
         mchc  Mesoplasma chauliocola
         mlac  Mesoplasma lactucae
         ment  Mesoplasma entomophilum
         msyr  Mesoplasma syrphidae
         mtab  Mesoplasma tabanidae
         mcol  Mesoplasma coleopterae
 
 
 
 
 
 
 
 
       Entomoplasma (4)
         elj  Entomoplasma luminosum
         esx  Entomoplasma somnilux
         efr  Entomoplasma freundtii
         eml  Entomoplasma melaleucae
 
 
 
 
       Spiroplasma (22)
         scr  Spiroplasma chrysopicola
         ssyr  Spiroplasma syrphidicola
         sdi  Spiroplasma diminutum
         stai  Spiroplasma taiwanense
         sapi  Spiroplasma apis
         smir  Spiroplasma mirum ATCC 29335
         smia  Spiroplasma mirum ATCC 29335 SMCA
         scq  Spiroplasma culicicola
         ssab  Spiroplasma sabaudiense
         satr  Spiroplasma atrichopogonis
         seri  Spiroplasma eriocheiris
         stur  Spiroplasma turonicum
         sll  Spiroplasma litorale
         skn  Spiroplasma kunkelii
         scj  Spiroplasma cantharicola
         shj  Spiroplasma helicoides
         sck  Spiroplasma citri
         sfz  Spiroplasma floricola
         scou  Spiroplasma corruscae
         scla  Spiroplasma clarkii
         sprn  Spiroplasma sp. NBRC 100390
         spit  Spiroplasma sp. TU-14
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Izimaplasma (1)
         mbj  Candidatus Izimaplasma sp. HR1
 
       Unclassified Tenericutes (2)
         tbm  Tenericutes bacterium MO-XQ
         tbz  Tenericutes bacterium MZ-XQ
 
 
     Actinobacteria (702)
       Mycobacterium (70)
         mtu  Mycobacterium tuberculosis H37Rv
         mtv  Mycobacterium tuberculosis H37Rv
         mtc  Mycobacterium tuberculosis CDC1551
         mra  Mycobacterium tuberculosis H37Ra
         mtf  Mycobacterium tuberculosis F11
         mtb  Mycobacterium tuberculosis KZN 1435
         mtk  Mycobacterium tuberculosis KZN 4207
         mtz  Mycobacterium tuberculosis KZN 605
         mtg  Mycobacterium tuberculosis RGTB327
         mti  Mycobacterium tuberculosis RGTB423
         mte  Mycobacterium tuberculosis CCDC5079
         mtur  Mycobacterium tuberculosis CCDC5079
         mtl  Mycobacterium tuberculosis CCDC5180
         mto  Mycobacterium tuberculosis CTRI-2
         mtd  Mycobacterium tuberculosis UT205
         mtn  Mycobacterium tuberculosis Erdman = ATCC 35801
         mtj  Mycobacterium tuberculosis Beijing/NITR203
         mtub  Mycobacterium tuberculosis 7199-99
         mtuc  Mycobacterium tuberculosis CAS/NITR204
         mtue  Mycobacterium tuberculosis EAI5/NITR206
         mtx  Mycobacterium tuberculosis EAI5
         mtuh  Mycobacterium tuberculosis Haarlem/NITR202
         mtul  Mycobacterium tuberculosis Haarlem
         mtut  Mycobacterium tuberculosis BT1
         mtuu  Mycobacterium tuberculosis BT2
         mtq  Mycobacterium tuberculosis HKBS1
         mbo  Mycobacterium tuberculosis variant bovis AF2122/97
         mbb  Mycobacterium tuberculosis variant bovis BCG Pasteur 1173P2
         mbt  Mycobacterium tuberculosis variant bovis BCG Tokyo 172
         mbm  Mycobacterium tuberculosis variant bovis BCG Mexico
         mbk  Mycobacterium tuberculosis variant bovis BCG Korea 1168P
         mbx  Mycobacterium tuberculosis variant bovis BCG ATCC 35743
         maf  Mycobacterium tuberculosis variant africanum
         mmic  Mycobacterium tuberculosis variant microti
         mce  Mycobacterium canettii CIPT 140010059
         mcq  Mycobacterium canettii CIPT 140060008
         mcv  Mycobacterium canettii CIPT 140070008
         mcx  Mycobacterium canettii CIPT 140070010
         mcz  Mycobacterium canettii CIPT 140070017
         mle  Mycobacterium leprae TN
         mlb  Mycobacterium leprae Br4923
         mpa  Mycobacterium avium subsp. paratuberculosis K-10
         mao  Mycobacterium avium subsp. paratuberculosis MAP4
         mavi  Mycobacterium avium subsp. paratuberculosis E1
         mavu  Mycobacterium avium subsp. paratuberculosis E93
         mav  Mycobacterium avium 104
         mit  Mycobacterium intracellulare MOTT-02
         mia  Mycobacterium intracellulare ATCC 13950
         mid  Mycobacterium intracellulare subsp. intracellulare
         myo  Mycobacterium intracellulare subsp. yongonense
         mir  Mycobacterium paraintracellulare
         mchi  Mycobacterium chimaera
         mmal  Mycobacterium marseillense
         mlp  Mycobacterium lepraemurium
         msa  Mycobacterium sp. JS623
         mul  Mycobacterium ulcerans
         mmc  Mycobacterium sp. MCS
         mkm  Mycobacterium sp. KMS
         mjl  Mycobacterium sp. JLS
         mmi  Mycobacterium marinum M
         mmae  Mycobacterium marinum E11
         mmm  Mycobacterium sp. MOTT36Y
         mli  Mycobacterium liflandii
         mkn  Mycobacterium kansasii ATCC 12478
         myv  Mycobacterium sp. VKM Ac-1817D
         mye  Mycobacterium sp. EPa45
         mhad  Mycobacterium haemophilum
         myn  Mycobacterium sp. NRRL B-3805
         mdx  Mycobacterium dioxanotrophicus
         mshg  Mycobacterium shigaense
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Mycolicibacterium (18)
         msm  Mycolicibacterium smegmatis MC2 155
         msg  Mycolicibacterium smegmatis MC2 155
         msb  Mycolicibacterium smegmatis MC2 155
         msn  Mycolicibacterium smegmatis INHR1
         msh  Mycolicibacterium smegmatis INHR2
         mva  Mycolicibacterium vanbaalenii
         mgi  Mycolicibacterium gilvum PYR-GCK
         msp  Mycolicibacterium gilvum Spyr1
         mcb  Mycolicibacterium chubuense
         mne  Mycolicibacterium neoaurum
         mgo  Mycolicibacterium goodii
         mft  Mycolicibacterium fortuitum
         mphl  Mycolicibacterium phlei
         mvq  Mycolicibacterium vaccae
         mll  Mycolicibacterium litorale
         mrh  Mycolicibacterium rhodesiae
         mthn  Mycolicibacterium thermoresistibile
         mhas  Mycolicibacterium hassiacum
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Mycobacteroides (9)
         mab  Mycobacteroides abscessus ATCC 19977
         mmv  Mycobacteroides abscessus subsp. massiliense GO 06
         mabb  Mycobacteroides abscessus subsp. bolletii 50594
         mabl  Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300
         mche  Mycobacteroides chelonae
         miz  Mycobacteroides immunogenum
         mste  Mycobacterium stephanolepidis
         msao  Mycobacteroides saopaulense
         msal  Mycobacteroides salmoniphilum
 
 
 
 
 
 
 
 
 
       Mycolicibacter (2)
         mjd  Mycolicibacter sinensis
         mter  Mycolicibacter terrae
 
 
       Hoyosella (1)
         asd  Hoyosella subflava
 
       Corynebacterium (97)
         cgl  Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko)
         cgb  Corynebacterium glutamicum ATCC 13032 (Bielefeld)
         cgu  Corynebacterium glutamicum K051
         cgt  Corynebacterium glutamicum R
         cgs  Corynebacterium glutamicum SCgG1
         cgg  Corynebacterium glutamicum SCgG2
         cgm  Corynebacterium glutamicum MB001
         cgj  Corynebacterium glutamicum ATCC 21831
         cgq  Corynebacterium glutamicum AR1
         cgx  Corynebacterium glutamicum B253
         cef  Corynebacterium efficiens
         cdi  Corynebacterium diphtheriae NCTC 13129
         cdp  Corynebacterium diphtheriae 241
         cdh  Corynebacterium diphtheriae INCA 402
         cdt  Corynebacterium diphtheriae HC01
         cde  Corynebacterium diphtheriae HC02
         cdr  Corynebacterium diphtheriae HC03
         cda  Corynebacterium diphtheriae HC04
         cdz  Corynebacterium diphtheriae 31A
         cdb  Corynebacterium diphtheriae BH8
         cds  Corynebacterium diphtheriae C7
         cdd  Corynebacterium diphtheriae CDCE 8392
         cdw  Corynebacterium diphtheriae PW8
         cdv  Corynebacterium diphtheriae VA01
         cdip  Corynebacterium diphtheriae NCTC11397
         cjk  Corynebacterium jeikeium
         cur  Corynebacterium urealyticum DSM 7109
         cua  Corynebacterium urealyticum DSM 7111
         car  Corynebacterium aurimucosum
         ckp  Corynebacterium kroppenstedtii
         cpu  Corynebacterium pseudotuberculosis FRC41
         cpl  Corynebacterium pseudotuberculosis 3/99-5
         cpg  Corynebacterium pseudotuberculosis 316
         cpp  Corynebacterium pseudotuberculosis P54B96
         cpk  Corynebacterium pseudotuberculosis 1002
         cpq  Corynebacterium pseudotuberculosis C231
         cpx  Corynebacterium pseudotuberculosis I19
         cpz  Corynebacterium pseudotuberculosis PAT10
         cor  Corynebacterium pseudotuberculosis 267
         cop  Corynebacterium pseudotuberculosis 31
         cod  Corynebacterium pseudotuberculosis 1/06-A
         cos  Corynebacterium pseudotuberculosis 42/02-A
         coi  Corynebacterium pseudotuberculosis CIP 52.97
         coe  Corynebacterium pseudotuberculosis 258
         cou  Corynebacterium pseudotuberculosis Cp162
         cpse  Corynebacterium pseudotuberculosis 48252
         cpsu  Corynebacterium pseudotuberculosis CS_10
         cpsf  Corynebacterium pseudotuberculosis Ft_2193/67
         crd  Corynebacterium resistens
         cul  Corynebacterium ulcerans BR-AD22
         cuc  Corynebacterium ulcerans 809
         cue  Corynebacterium ulcerans 0102
         cun  Corynebacterium ulcerans 210932
         cus  Corynebacterium ulcerans FRC11
         cuq  Corynebacterium ulcerans 210931
         cuz  Corynebacterium ulcerans 05146
         cuj  Corynebacterium ulcerans 131002
         cva  Corynebacterium variabile
         chn  Corynebacterium halotolerans
         ccn  Corynebacterium callunae
         cter  Corynebacterium terpenotabidum
         cmd  Corynebacterium maris
         caz  Corynebacterium argentoratense
         cfn  Corynebacterium falsenii
         ccg  Corynebacterium casei
         cvt  Corynebacterium vitaeruminis
         cgy  Corynebacterium glyciniphilum
         cax  Corynebacterium atypicum
         cii  Corynebacterium imitans
         cuv  Corynebacterium ureicelerivorans
         coa  Corynebacterium sp. ATCC 6931
         cdo  Corynebacterium doosanense
         chm  Corynebacterium humireducens
         csx  Corynebacterium singulare
         cmq  Corynebacterium marinum
         cku  Corynebacterium kutscheri
         ccj  Corynebacterium camporealensis
         cmv  Corynebacterium mustelae
         cei  Corynebacterium epidermidicanis
         cted  Corynebacterium testudinoris
         cut  Corynebacterium uterequi
         clw  Corynebacterium lactis
         cdx  Corynebacterium deserti
         csp  Corynebacterium simulans
         csta  Corynebacterium stationis
         ccjz  Corynebacterium crudilactis
         cfk  Corynebacterium frankenforstense
         cpho  Corynebacterium phocae
         cfc  Corynebacterium flavescens
         cgv  Corynebacterium glaucum
         cstr  Corynebacterium striatum
         caqu  Corynebacterium aquilae
         csph  Corynebacterium sphenisci
         camg  Corynebacterium ammoniagenes
         cmin  Corynebacterium minutissimum
         cpeg  Corynebacterium pelargi
         bfv  Brevibacterium flavum ZL-1
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Nocardia (10)
         nfa  Nocardia farcinica IFM 10152
         nfr  Nocardia farcinica NCTC11134
         ncy  Nocardia cyriacigeorgica
         nbr  Nocardia brasiliensis
         nno  Nocardia nova
         nsl  Nocardia mangyaensis
         nsr  Nocardia seriolae
         ntp  Nocardia terpenica
         noz  Nocardia sp. CS682
         nod  Nocardia otitidiscaviarum
 
 
 
 
 
 
 
 
 
 
       Rhodococcus (20)
         rha  Rhodococcus jostii
         rer  Rhodococcus erythropolis PR4
         rey  Rhodococcus erythropolis CCM2595
         reb  Rhodococcus erythropolis BG43
         rop  Rhodococcus opacus B4
         roa  Rhodococcus opacus PD630
         req  Rhodococcus hoagii
         rpy  Rhodococcus pyridinivorans
         rhb  Rhodococcus sp. B7740
         rav  Rhodococcus aetherivorans
         rfa  Rhodococcus fascians
         rhw  Rhodococcus sp. WMMA185
         rhs  Rhodococcus sp. PBTS 2
         rrz  Rhodococcus ruber
         rhu  Rhodococcus sp. PBTS 1
         rqi  Rhodococcus qingshengii
         rhq  Rhodococcus sp. p52
         rhod  Rhodococcus sp. 008
         rrt  Rhodococcus rhodochrous
         rby  Rhodococcus biphenylivorans
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Gordonia (11)
         gbr  Gordonia bronchialis
         gpo  Gordonia polyisoprenivorans
         gor  Gordonia sp. KTR9
         goq  Gordonia phthalatica
         gta  Gordonia terrae
         goc  Gordonia sp. YC-JH1
         git  Gordonia iterans
         gru  Gordonia rubripertincta
         gom  Gordonia sp. MMS17-SY073
         gav  Gordonia alkanivorans
         god  Gordonia sp. 135
 
 
 
 
 
 
 
 
 
 
 
       Tsukamurella (2)
         tpr  Tsukamurella paurometabola
         tsm  Tsukamurella tyrosinosolvens
 
 
       Segniliparus (1)
         srt  Segniliparus rotundus
 
       Dietzia (5)
         dtm  Dietzia timorensis
         dit  Dietzia sp. oral taxon 368
         diz  Dietzia sp. JS16-p6b
         dpc  Dietzia psychralcaliphila
         dlu  Dietzia lutea
 
 
 
 
 
       Lawsonella (1)
         cbq  Lawsonella clevelandensis
 
       Tomitella (1)
         toy  Tomitella sp. HY188
 
       Streptomyces (66)
         sco  Streptomyces coelicolor
         salb  Streptomyces albidoflavus
         sma  Streptomyces avermitilis
         sgr  Streptomyces griseus
         sgb  Streptomyces globisporus
         scb  Streptomyces scabiei
         ssx  Streptomyces sp. SirexAA-E
         svl  Streptomyces violaceusniger
         sct  Streptomyces cattleya NRRL 8057 = DSM 46488
         scy  Streptomyces cattleya NRRL 8057 = DSM 46488
         sfa  Streptomyces pratensis
         sbh  Streptomyces bingchenggensis
         shy  Streptomyces hygroscopicus subsp. jinggangensis 5008
         sho  Streptomyces hygroscopicus subsp. jinggangensis TL01
         sve  Streptomyces venezuelae
         sdv  Streptomyces davaonensis
         sals  Streptomyces albus DSM 41398
         strp  Streptomyces sp. PAMC 26508
         sfi  Streptomyces fulvissimus
         sci  Streptomyces collinus
         src  Streptomyces rapamycinicus
         salu  Streptomyces albulus NK660
         sall  Streptomyces albulus ZPM
         slv  Streptomyces lividans
         sgu  Streptomyces glaucescens
         svt  Streptomyces vietnamensis
         stre  Streptomyces sp. 769
         scw  Streptomyces cyaneogriseus
         sld  Streptomyces lydicus A02
         slc  Streptomyces lydicus 103
         sxi  Streptomyces xiamenensis
         strm  Streptomyces sp. Mg1
         strc  Streptomyces sp. CNQ-509
         samb  Streptomyces ambofaciens
         spri  Streptomyces pristinaespiralis
         scz  Streptomyces sp. CFMR 7
         scx  Streptomyces sp. CdTB01
         srw  Streptomyces reticuli
         strf  Streptomyces sp. 4F
         sle  Streptomyces leeuwenhoekii
         srn  Streptomyces rubrolavendulae
         spav  Streptomyces parvulus
         strt  Streptomyces sp. SAT1
         sclf  Streptomyces clavuligerus
         sgs  Streptomyces griseochromogenes
         stsi  Streptomyces qaidamensis
         sls  Streptomyces lincolnensis
         snr  Streptomyces noursei
         splu  Streptomyces pluripotens
         strd  Streptomyces sp. CCM_MD2014
         snw  Streptomyces niveus
         sauo  Streptomyces autolyticus
         ssia  Streptomyces alfalfae
         svu  Streptomyces violaceoruber
         spun  Streptomyces puniciscabiei
         sgv  Streptomyces gilvosporeus
         smal  Streptomyces malaysiensis
         slau  Streptomyces laurentii
         salf  Streptomyces alboflavus
         salj  Streptomyces albireticuli
         slx  Streptomyces lavendulae
         stro  Streptomyces sp. MOE7
         sfk  Streptomyces formicae
         snz  Streptomyces nigra
         sge  Streptomyces griseorubiginosus
         srj  Streptomyces rochei
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Kitasatospora (4)
         ksk  Kitasatospora setae
         kab  Kitasatospora albolonga
         kau  Kitasatospora aureofaciens
         kit  Kitasatospora sp. MMS16-BH015
 
 
 
 
       Streptacidiphilus (1)
         stri  Streptacidiphilus sp. DSM 106435
 
       Tropheryma (2)
         twh  Tropheryma whipplei Twist
         tws  Tropheryma whipplei TW08/27
 
 
       Luteimicrobium (1)
         lxl  Luteimicrobium xylanilyticum
 
       Leifsonia (2)
         lxx  Leifsonia xyli subsp. xyli CTCB07
         lxy  Leifsonia xyli subsp. cynodontis DSM 46306
 
 
       Clavibacter (5)
         cmi  Clavibacter michiganensis subsp. michiganensis
         cms  Clavibacter michiganensis subsp. sepedonicus
         cmc  Clavibacter michiganensis subsp. nebraskensis
         cmh  Clavibacter michiganensis subsp. insidiosus
         ccap  Clavibacter michiganensis subsp. capsici
 
 
 
 
 
       Microbacterium (14)
         mts  Microbacterium testaceum
         mim  Microbacterium sp. CGR1
         mio  Microbacterium sp. No. 7
         mix  Microbacterium sp. XT11
         mip  Microbacterium sp. PAMC 28756
         mcw  Microbacterium chocolatum
         mpal  Microbacterium paludicola
         mih  Microbacterium sp. BH-3-3-3
         micr  Microbacterium sp. 1.5R
         maur  Microbacterium aurum
         mhos  Microbacterium hominis
         mfol  Microbacterium foliorum
         moo  Microbacterium oleivorans
         mlv  Microbacterium lemovicicum
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Rhodoluna (2)
         rla  Rhodoluna lacicola
         rpla  Candidatus Rhodoluna planktonica
 
 
       Rathayibacter (6)
         rtx  Rathayibacter toxicus 70137
         rtc  Rathayibacter toxicus WAC3373
         rtn  Rathayibacter tritici
         rry  Rathayibacter rathayi
         ria  Rathayibacter iranicus
         rfs  Rathayibacter festucae
 
 
 
 
 
 
       Curtobacterium (4)
         cum  Curtobacterium sp. MR_MD2014
         cub  Curtobacterium sp. BH-2-1-1
         cug  Curtobacterium sp. SGAir0471
         cqf  Curtobacterium flaccumfaciens
 
 
 
 
       Microterricola (1)
         mvd  Microterricola viridarii
 
       Frondihabitans (1)
         frp  Frondihabitans sp. PAMC 28766
 
       Agromyces (3)
         agy  Agromyces aureus
         agm  Agromyces sp. MF30-A
         agf  Agromyces sp. FW100M-8
 
 
 
       Cryobacterium (2)
         cart  Cryobacterium arcticum
         cry  Cryobacterium sp. LW097
 
 
       Cnuibacter (1)
         cphy  Cnuibacter physcomitrellae
 
       Aurantimicrobium (3)
         amin  Aurantimicrobium minutum
         aum  Aurantimicrobium sp. MWH-Mo1
         auw  Aurantimicrobium sp. MWH-Uga1
 
 
 
       Pontimonas (1)
         psai  Pontimonas salivibrio
 
       Microcella (1)
         malk  Microcella alkaliphila
 
       Mycetocola (1)
         myl  Mycetocola sp. 449
 
       Salinibacterium (3)
         salc  Salinibacterium sp. CGMCC 1.16371
         sala  Salinibacterium sp. UTAS2018
         sald  Salinibacterium sp. dk2585
 
 
 
       Humibacter (2)
         hum  Humibacter sp. BT305
         huw  Humibacter sp. WJ7-1
 
 
       Gryllotalpicola (1)
         gry  Gryllotalpicola sp. 2DFW10M-5
 
       Protaetiibacter (1)
         lyd  Protaetiibacter intestinalis
 
       Lysinimonas (1)
         lyk  Lysinimonas sp. KACC 19322
 
       Plantibacter (1)
         plap  Plantibacter sp. PA-3-X8
 
       Leucobacter (2)
         leu  Leucobacter sp. DSM 101948
         ltr  Leucobacter triazinivorans
 
 
       Agrococcus (1)
         agg  Agrococcus sp. SGAir0287
 
       Arthrobacter (17)
         art  Arthrobacter sp. FB24
         arr  Arthrobacter sp. Rue61a
         arm  Arthrobacter sp. PAMC 25486
         arl  Arthrobacter sp. LS16
         are  Arthrobacter sp. ERGS1:01
         aaq  Arthrobacter alpinus R3.8
         arw  Arthrobacter alpinus A3
         arh  Arthrobacter sp. Hiyo8
         ary  Arthrobacter sp. YC-RL1
         arz  Arthrobacter sp. ATCC 21022
         aru  Arthrobacter sp. U41
         arq  Arthrobacter sp. QXT-31
         arn  Arthrobacter sp. YN
         arx  Arthrobacter sp. ZXY-2
         acry  Arthrobacter crystallopoietes
         arth  Arthrobacter sp. PGP41
         artp  Arthrobacter sp. PAMC25564
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Psychromicrobium (1)
         ari  Psychromicrobium lacuslunae
 
       Paenarthrobacter (1)
         aau  Paenarthrobacter aurescens
 
       Pseudarthrobacter (4)
         ach  Pseudarthrobacter chlorophenolicus
         apn  Pseudarthrobacter phenanthrenivorans
         psul  Pseudarthrobacter sulfonivorans
         psni  Pseudarthrobacter sp. NIBRBAC000502771
 
 
 
 
       Glutamicibacter (4)
         aai  Glutamicibacter arilaitensis Re117
         gar  Glutamicibacter halophytocola
         gcr  Glutamicibacter creatinolyticus
         glu  Glutamicibacter sp. ZJUTW
 
 
 
 
       Renibacterium (1)
         rsa  Renibacterium salmoninarum
 
       Kocuria (5)
         krh  Kocuria rhizophila
         kpl  Kocuria palustris
         kfv  Kocuria flava
         kii  Kocuria indica
         krs  Kocuria rosea
 
 
 
 
 
       Micrococcus (2)
         mlu  Micrococcus luteus
         mick  Micrococcus sp. KBS0714
 
 
       Rothia (3)
         rmu  Rothia mucilaginosa
         rdn  Rothia dentocariosa
         raj  Rothia aeria
 
 
 
       Sinomonas (1)
         satk  Sinomonas atrocyanea
 
       Neomicrococcus (1)
         nae  Neomicrococcus aestuarii
 
       Auritidibacter (1)
         aul  Auritidibacter sp. NML130574
 
       Citricoccus (1)
         cig  Citricoccus sp. SGAir0453
 
       Beutenbergia (1)
         bcv  Beutenbergia cavernae
 
       Brachybacterium (7)
         bfa  Brachybacterium faecium
         brx  Brachybacterium sp. P6-10-X1
         brv  Brachybacterium sp. VR2415
         bgg  Brachybacterium ginsengisoli
         brz  Brachybacterium sp. VM2412
         bsau  Brachybacterium saurashtrense
         brr  Brachybacterium sp. SGAir0954
 
 
 
 
 
 
 
       Dermabacter (2)
         dva  Dermabacter vaginalis
         djj  Dermabacter jinjuensis
 
 
       Jonesia (1)
         jde  Jonesia denitrificans
 
       Kytococcus (1)
         kse  Kytococcus sedentarius
 
       Dermacoccus (2)
         dni  Dermacoccus nishinomiyaensis
         day  Dermacoccus abyssi
 
 
       Luteipulveratus (1)
         lmoi  Luteipulveratus mongoliensis
 
       Xylanimonas (1)
         xce  Xylanimonas cellulosilytica
 
       Isoptericola (2)
         iva  Isoptericola variabilis
         ido  Isoptericola dokdonensis
 
 
       Cellulosimicrobium (2)
         cet  Cellulosimicrobium sp. TH-20
         cceu  Cellulosimicrobium cellulans
 
 
       Xylanimicrobium (1)
         xya  Xylanimicrobium sp. FW10M-9
 
       Xylanibacterium (1)
         xyl  Xylanibacterium sp. 2JSPR-7
 
       Sanguibacter (1)
         ske  Sanguibacter keddieii
 
       Cellulomonas (5)
         cfl  Cellulomonas flavigena
         cfi  Cellulomonas fimi
         cga  Cellulomonas gilvus
         cez  Cellulomonas sp. PSBB021
         celz  Cellulomonas sp. Z28
 
 
 
 
 
       Oerskovia (1)
         oek  Oerskovia sp. KBS0722
 
       Pseudactinotalea (1)
         psei  Pseudactinotalea sp. HY158
 
       Intrasporangium (1)
         ica  Intrasporangium calvum
 
       Arsenicicoccus (1)
         ars  Arsenicicoccus sp. oral taxon 190
 
       Serinicoccus (2)
         serj  Serinicoccus sp. JLT9
         serw  Serinicoccus sp. W204
 
 
       Janibacter (2)
         jte  Janibacter indicus
         jli  Janibacter limosus
 
 
       Ornithinimicrobium (2)
         orn  Ornithinimicrobium sp. AMA3305
         orz  Ornithinimicrobium sp. H23M54
 
 
       Tetrasphaera (1)
         teh  Tetrasphaera sp. HKS02
 
       Brevibacterium (3)
         bly  Brevibacterium linens BS258
         blin  Brevibacterium aurantiacum
         bri  Brevibacterium sp. CS2
 
 
 
       Dermatophilus (1)
         dco  Dermatophilus congolensis
 
       Georgenia (1)
         gez  Georgenia sp. Z294
 
       Cutibacterium (14)
         pac  Cutibacterium acnes KPA171202
         pak  Cutibacterium acnes SK137
         pav  Cutibacterium acnes TypeIA2 P.acn17
         pax  Cutibacterium acnes TypeIA2 P.acn31
         paz  Cutibacterium acnes TypeIA2 P.acn33
         paw  Cutibacterium acnes 266
         pad  Cutibacterium acnes subsp. defendens ATCC 11828
         pcn  Cutibacterium acnes 6609
         pacc  Cutibacterium acnes C1
         pach  Cutibacterium acnes HL096PA1
         pacn  Cutibacterium acnes hdn-1
         cacn  Cutibacterium acnes KCOM 1861 (= ChDC B594)
         pra  Cutibacterium avidum
         cgrn  Cutibacterium granulosum
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Propionibacterium (4)
         pfr  Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
         pfre  Propionibacterium freudenreichii subsp. freudenreichii DSM 20271
         prl  Propionibacterium sp. oral taxon 193
         pacd  Propionibacterium acidifaciens
 
 
 
 
       Pseudopropionibacterium (1)
         ppc  Pseudopropionibacterium propionicum
 
       Acidipropionibacterium (4)
         pbo  Acidipropionibacterium acidipropionici ATCC 4875
         aaci  Acidipropionibacterium acidipropionici CGMCC 1.2230
         acij  Acidipropionibacterium virtanenii
         aji  Acidipropionibacterium jensenii
 
 
 
 
       Microlunatus (3)
         mph  Microlunatus phosphovorus
         mik  Microlunatus sp. KUDC0627
         micg  Microlunatus sp. Gsoil 973
 
 
 
       Tessaracoccus (4)
         tfl  Tessaracoccus flavus
         tfa  Tessaracoccus flavescens
         tes  Tessaracoccus aquimaris
         tez  Tessaracoccus sp. T2.5-30
 
 
 
 
       Raineyella (1)
         rain  Raineyella sp. CBA3103
 
       Nocardioides (4)
         nca  Nocardioides sp. JS614
         ndk  Nocardioides dokdonensis
         noy  Nocardioides sp. MMS17-SY117
         noi  Nocardioides sp. dk3136
 
 
 
 
       Kribbella (1)
         kfl  Kribbella flavida
 
       Pimelobacter (1)
         psim  Pimelobacter simplex
 
       Aeromicrobium (4)
         aer  Aeromicrobium erythreum
         aez  Aeromicrobium sp. 592
         aeb  Aeromicrobium sp. A1-2
         aef  Aeromicrobium sp. MF47
 
 
 
 
       Micropruina (1)
         mgg  Micropruina glycogenica
 
       Thermobifida (1)
         tfu  Thermobifida fusca
 
       Nocardiopsis (3)
         nda  Nocardiopsis dassonvillei
         nal  Nocardiopsis alba
         ngv  Nocardiopsis gilva
 
 
 
       Streptomonospora (1)
         strr  Streptomonospora sp. M2
 
       Thermomonospora (1)
         tcu  Thermomonospora curvata
 
       Actinomadura (1)
         actw  Actinomadura sp. WMMB499
 
       Streptosporangium (1)
         sro  Streptosporangium roseum
 
       Nonomuraea (2)
         noa  Nonomuraea sp. ATCC 55076
         now  Nonomuraea sp. WYY166
 
 
       Frankia (5)
         fra  Frankia casuarinae
         fre  Frankia sp. EAN1pec
         fri  Frankia inefficax
         fal  Frankia alni
         fsy  Frankia symbiont
 
 
 
 
 
       Acidothermus (1)
         ace  Acidothermus cellulolyticus
 
       Nakamurella (2)
         nml  Nakamurella multipartita
         nak  Nakamurella sp. s14-144
 
 
       Geodermatophilus (1)
         gob  Geodermatophilus obscurus
 
       Blastococcus (1)
         bsd  Blastococcus saxobsidens
 
       Modestobacter (1)
         mmar  Modestobacter marinus
 
       Kineococcus (1)
         kra  Kineococcus radiotolerans
 
       Saccharopolyspora (2)
         sen  Saccharopolyspora erythraea
         sace  Saccharopolyspora sp. E2A
 
 
       Saccharomonospora (2)
         svi  Saccharomonospora viridis
         sacc  Saccharomonospora sp. 31sw
 
 
       Amycolatopsis (11)
         amd  Amycolatopsis mediterranei U32
         amn  Amycolatopsis mediterranei S699
         amm  Amycolatopsis mediterranei S699
         amz  Amycolatopsis mediterranei RB
         aoi  Amycolatopsis orientalis
         aja  Amycolatopsis japonica
         amq  Amycolatopsis methanolica
         amyc  Amycolatopsis sp. AA4
         amyb  Amycolatopsis sp. BJA-103
         aab  Amycolatopsis albispora
         amyy  Amycolatopsis sp. YIM 10
 
 
 
 
 
 
 
 
 
 
 
       Pseudonocardia (8)
         pdx  Pseudonocardia dioxanivorans
         psea  Pseudonocardia sp. AL041005-10
         psee  Pseudonocardia sp. EC080625-04
         pseh  Pseudonocardia sp. HH130629-09
         pseq  Pseudonocardia sp. EC080610-09
         pecq  Pseudonocardia sp EC080619-01
         phh  Pseudonocardia sp. HH130630-07
         paut  Pseudonocardia autotrophica
 
 
 
 
 
 
 
 
       Actinosynnema (2)
         ami  Actinosynnema mirum
         apre  Actinosynnema pretiosum
 
 
       Saccharothrix (2)
         sesp  Saccharothrix espanaensis
         ssyi  Saccharothrix syringae
 
 
       Kutzneria (1)
         kal  Kutzneria albida
 
       Kibdelosporangium (1)
         kphy  Kibdelosporangium phytohabitans
 
       Lentzea (1)
         led  Lentzea guizhouensis
 
       Actinoalloteichus (5)
         ahm  Actinoalloteichus hymeniacidonis
         acti  Actinoalloteichus sp. GBA129-24
         acad  Actinoalloteichus fjordicus
         ahg  Actinoalloteichus hoggarensis
         acta  Actinoalloteichus sp. AHMU CJ021
 
 
 
 
 
       Alloactinosynnema (1)
         alo  Alloactinosynnema sp. L-07
 
       Prauserella (1)
         pmad  Prauserella marina
 
       Salinispora (2)
         stp  Salinispora tropica
         saq  Salinispora arenicola
 
 
       Micromonospora (6)
         mau  Micromonospora aurantiaca
         mil  Micromonospora sp. L5
         micb  Micromonospora sp. B006
         mtua  Micromonospora tulbaghiae
         mich  Micromonospora sp. HM134
         mtem  Micromonospora terminaliae
 
 
 
 
 
 
       Verrucosispora (1)
         vma  Verrucosispora maris
 
       Actinoplanes (5)
         ams  Actinoplanes missouriensis
         ase  Actinoplanes sp. SE50/110
         actn  Actinoplanes sp. N902-109
         afs  Actinoplanes friuliensis
         acts  Actinoplanes sp. SE50
 
 
 
 
 
       Plantactinospora (3)
         plk  Plantactinospora sp. KBS50
         plab  Plantactinospora sp. BC1
         plat  Plantactinospora sp. BB1
 
 
 
       Catenulispora (1)
         cai  Catenulispora acidiphila
 
       Stackebrandtia (1)
         sna  Stackebrandtia nassauensis
 
       Salilacibacter (1)
         sale  Salilacibacter sp. NKC3-5
 
       Arcanobacterium (1)
         ahe  Arcanobacterium haemolyticum
 
       Mobiluncus (1)
         mcu  Mobiluncus curtisii
 
       Trueperella (3)
         tpy  Trueperella pyogenes TP6375
         tpyo  Trueperella pyogenes TP8
         tbw  Trueperella bialowiezensis
 
 
 
       Actinotignum (2)
         asg  Actinotignum schaalii
         actt  Actinobaculum sp. 313
 
 
       Schaalia (2)
         amy  Schaalia meyeri
         soo  Schaalia odontolytica
 
 
       Actinomyces (9)
         acq  Actinomyces sp. oral taxon 414
         aos  Actinomyces oris
         ard  Actinomyces radicidentis
         avu  Actinomyces tangfeifanii
         actp  Actinomyces gaoshouyii
         actc  Actinomyces sp. Chiba101
         acto  Actinomyces sp. oral taxon 897
         ane  Actinomyces naeslundii
         ahw  Actinomyces howellii
 
 
 
 
 
 
 
 
 
       Flaviflexus (2)
         fsl  Flaviflexus salsibiostraticola
         flh  Flaviflexus sp. H23T48
 
 
       Bifidobacterium (55)
         blo  Bifidobacterium longum NCC2705
         blj  Bifidobacterium longum DJO10A
         bln  Bifidobacterium longum subsp. infantis ATCC 15697 (JGI)
         blon  Bifidobacterium longum subsp. infantis ATCC 15697 (Tokyo)
         blf  Bifidobacterium longum subsp. infantis 157F
         bll  Bifidobacterium longum subsp. longum JDM301
         blb  Bifidobacterium longum subsp. longum BBMN68
         blm  Bifidobacterium longum subsp. longum JCM 1217
         blk  Bifidobacterium longum subsp. longum KACC 91563
         blg  Bifidobacterium longum subsp. longum F8
         blz  Bifidobacterium longum subsp. longum GT15
         blx  Bifidobacterium longum BXY01
         bad  Bifidobacterium adolescentis ATCC 15703
         badl  Bifidobacterium adolescentis 22L
         bado  Bifidobacterium adolescentis BBMN23
         bla  Bifidobacterium animalis subsp. lactis AD011
         blc  Bifidobacterium animalis subsp. lactis Bl-04
         blt  Bifidobacterium animalis subsp. lactis DSM 10140
         bbb  Bifidobacterium animalis subsp. lactis BB-12
         bbc  Bifidobacterium animalis subsp. lactis BLC1
         bnm  Bifidobacterium animalis subsp. lactis CNCM I-2494
         blv  Bifidobacterium animalis subsp. lactis V9
         blw  Bifidobacterium animalis subsp. lactis B420
         bls  Bifidobacterium animalis subsp. lactis Bi-07
         bani  Bifidobacterium animalis subsp. lactis Bl12
         banl  Bifidobacterium animalis subsp. lactis ATCC 27673
         bni  Bifidobacterium animalis subsp. animalis ATCC 25527
         banm  Bifidobacterium animalis RH
         bde  Bifidobacterium dentium Bd1
         bdn  Bifidobacterium dentium JCM 1195 = DSM 20436
         bbi  Bifidobacterium bifidum S17
         bbp  Bifidobacterium bifidum PRL2010
         bbf  Bifidobacterium bifidum BGN4
         bbv  Bifidobacterium breve ACS-071-V-Sch8b
         bbru  Bifidobacterium breve UCC2003
         bbre  Bifidobacterium breve 12L
         bbrv  Bifidobacterium breve 689b
         bbrj  Bifidobacterium breve JCM 7017
         bbrc  Bifidobacterium breve JCM 7019
         bbrn  Bifidobacterium breve NCFB 2258
         bbrs  Bifidobacterium breve S27
         bbrd  Bifidobacterium breve DSM 20213 = JCM 1192
         bast  Bifidobacterium asteroides
         btp  Bifidobacterium thermophilum
         bcor  Bifidobacterium coryneforme
         bka  Bifidobacterium kashiwanohense PV20-2
         bks  Bifidobacterium kashiwanohense JCM 15439 = DSM 21854
         bcat  Bifidobacterium catenulatum
         bpsp  Bifidobacterium pseudolongum
         bii  Bifidobacterium indicum
         bang  Bifidobacterium angulatum
         bpsc  Bifidobacterium pseudocatenulatum
         bsca  Bifidobacterium scardovii
         bact  Bifidobacterium actinocoloniiforme
         bcho  Bifidobacterium choerinum
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Gardnerella (3)
         gva  Gardnerella vaginalis 409-05
         gvg  Gardnerella vaginalis ATCC 14019
         gvh  Gardnerella vaginalis HMP9231
 
 
 
       Scardovia (1)
         sij  Scardovia inopinata
 
       Parascardovia (1)
         pdo  Parascardovia denticolens
 
       Thermobispora (1)
         tbi  Thermobispora bispora
 
       Actinopolyspora (1)
         aey  Actinopolyspora erythraea
 
       Planktophila (6)
         plan  Candidatus Planktophila lacus
         plak  Candidatus Planktophila dulcis
         plim  Candidatus Planktophila limnetica
         psuf  Candidatus Planktophila sulfonica
         pvs  Candidatus Planktophila versatilis
         pvn  Candidatus Planktophila vernalis
 
 
 
 
 
 
       Nanopelagicus (3)
         abam  Candidatus Nanopelagicus limnes
         nhi  Candidatus Nanopelagicus hibericus
         nab  Candidatus Nanopelagicus abundans
 
 
 
       Unclassified Actinobacteria (1)
         abai  Actinobacteria bacterium IMCC26256
 
       Rubrobacter (2)
         rxy  Rubrobacter xylanophilus
         rrd  Rubrobacter radiotolerans
 
 
       Baekduia (1)
         bsol  Baekduia soli
 
       Conexibacter (1)
         cwo  Conexibacter woesei
 
       Acidimicrobium (1)
         afo  Acidimicrobium ferrooxidans
 
       Ilumatobacter (1)
         aym  Ilumatobacter coccineus
 
       Cryptobacterium (1)
         ccu  Cryptobacterium curtum
 
       Slackia (1)
         shi  Slackia heliotrinireducens
 
       Eggerthella (2)
         ele  Eggerthella lenta
         eyy  Eggerthella sp. YY7918
 
 
       Gordonibacter (1)
         gpa  Gordonibacter pamelaeae
 
       Adlercreutzia (1)
         aeq  Adlercreutzia equolifaciens
 
       Denitrobacterium (1)
         ddt  Denitrobacterium detoxificans
 
       Atopobium (1)
         apv  Atopobium parvulum
 
       Olsenella (2)
         ols  Olsenella uli
         olo  Olsenella sp. oral taxon 807
 
 
       Parolsenella (1)
         pcat  Parolsenella catena
 
       Coriobacterium (1)
         cgo  Coriobacterium glomerans
 
       Collinsella (1)
         caer  Collinsella aerofaciens
 
       Unclassified Coriobacteriaceae (1)
         cbac  Coriobacteriaceae bacterium 68-1-3
 
       Egibacter (1)
         erz  Egibacter rhizosphaerae
 
       Euzebya (1)
         euz  Euzebya sp. DY32-46
 
     Cyanobacteria (120)
       Synechocystis (8)
         syn  Synechocystis sp. PCC 6803
         syz  Synechocystis sp. PCC 6803
         syy  Synechocystis sp. PCC 6803 GT-S
         syt  Synechocystis sp. PCC 6803 GT-I
         sys  Synechocystis sp. PCC 6803 PCC-N
         syq  Synechocystis sp. PCC 6803 PCC-P
         syj  Synechocystis sp. PCC 6714
         syo  Synechocystis sp. IPPAS B-1465
 
 
 
 
 
 
 
 
       Synechococcus (22)
         syw  Synechococcus sp. WH8102
         syc  Synechococcus elongatus PCC6301
         syf  Synechococcus elongatus PCC7942
         syd  Synechococcus sp. CC9605
         sye  Synechococcus sp. CC9902
         syg  Synechococcus sp. CC9311
         syr  Synechococcus sp. RCC307
         syx  Synechococcus sp. WH7803
         syp  Synechococcus sp. PCC7002
         cya  Synechococcus sp. JA-3-3Ab
         cyb  Synechococcus sp. JA-2-3B'a(2-13)
         syne  Synechococcus sp. PCC 6312
         synp  Synechococcus sp. PCC 7502
         synk  Synechococcus sp. KORDI-100
         synr  Synechococcus sp. KORDI-49
         synd  Synechococcus sp. KORDI-52
         syu  Synechococcus sp. UTEX 2973
         syh  Synechococcus sp. WH 8109
         synw  Synechococcus sp. WH 8103
         slw  Synechococcus lividus
         syv  Synechococcus sp. PCC 73109
         syl  Synechococcus sp. PCC 7003
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Thermosynechococcus (4)
         tel  Thermosynechococcus elongatus
         thn  Thermosynechococcus sp. NK55
         tvn  Thermosynechococcus vulcanus
         thec  Thermosynechococcus sp. CL-1
 
 
 
 
       Cyanobium (2)
         cgc  Cyanobium gracile
         cyi  Cyanobium sp. NIES-981
 
 
       Dactylococcopsis (1)
         dsl  Dactylococcopsis salina
 
       Chamaesiphon (1)
         cmp  Chamaesiphon minutus
 
       Leptolyngbya (4)
         lep  Leptolyngbya sp. PCC 7376
         len  Leptolyngbya sp. NIES-3755
         let  Leptolyngbya sp. O-77
         lbo  Leptolyngbya boryana
 
 
 
 
       Halomicronema (1)
         hhg  Halomicronema hongdechloris
 
       Pseudanabaena (2)
         pseu  Pseudanabaena sp. PCC 7367
         pser  Pseudanabaena sp. ABRG5-3
 
 
       Prochlorococcus (14)
         pma  Prochlorococcus marinus subsp. marinus CCMP1375
         pmm  Prochlorococcus marinus subsp. pastoris CCMP1986
         pmt  Prochlorococcus marinus MIT 9313
         pmn  Prochlorococcus marinus NATL2A
         pmi  Prochlorococcus marinus MIT 9312
         pmb  Prochlorococcus marinus AS9601
         pmc  Prochlorococcus marinus MIT 9515
         pmf  Prochlorococcus marinus MIT 9303
         pmg  Prochlorococcus marinus MIT 9301
         pmh  Prochlorococcus marinus MIT 9215
         pmj  Prochlorococcus marinus MIT 9211
         pme  Prochlorococcus marinus NATL1A
         prc  Prochlorococcus sp. MIT 0604
         prm  Prochlorococcus sp. MIT 0801
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Acaryochloris (1)
         amr  Acaryochloris marina
 
       Gloeocapsa (1)
         glp  Gloeocapsa sp. PCC 7428
 
       Geminocystis (2)
         gen  Geminocystis sp. NIES-3709
         gee  Geminocystis sp. NIES-3708
 
 
       Chondrocystis (1)
         chon  Chondrocystis sp. NIES-4102
 
       Microcystis (4)
         mar  Microcystis aeruginosa
         mpk  Microcystis panniformis
         miq  Microcystis sp. MC19
         mvz  Microcystis viridis
 
 
 
 
       Cyanobacterium (3)
         can  Cyanobacterium aponinum
         csn  Cyanobacterium stanieri
         cyl  Cyanobacterium sp. HL-69
 
 
 
       Halothece (1)
         hao  Halothece sp. PCC 7418
 
       Euhalothece (1)
         enn  Euhalothece natronophila
 
       Atelocyanobacterium (1)
         cyu  Candidatus Atelocyanobacterium thalassa
 
       Crocosphaera (2)
         cyt  Crocosphaera subtropica
         cwa  Crocosphaera watsonii
 
 
       Rippkaea (2)
         cyp  Rippkaea orientalis PCC 8801
         cyh  Rippkaea orientalis PCC 8802
 
 
       Gloeothece (2)
         cyc  Gloeothece citriformis
         cyj  Gloeothece verrucosa
 
 
       Cyanothece (1)
         cyn  Cyanothece sp. PCC 7425
 
       Trichodesmium (1)
         ter  Trichodesmium erythraeum
 
       Microcoleus (1)
         mic  Microcoleus sp. PCC 7113
 
       Arthrospira (1)
         arp  Arthrospira platensis
 
       Planktothrix (1)
         pagh  Planktothrix agardhii
 
       Geitlerinema (1)
         gei  Geitlerinema sp. PCC 7407
 
       Oscillatoria (2)
         oac  Oscillatoria acuminata
         oni  Oscillatoria nigro-viridis
 
 
       Moorea (1)
         mpro  Moorea producens
 
       Crinalium (1)
         cep  Crinalium epipsammum
 
       Gloeobacter (2)
         gvi  Gloeobacter violaceus
         glj  Gloeobacter kilaueensis
 
 
       Nostoc (7)
         ana  Nostoc sp. PCC 7120
         npu  Nostoc punctiforme
         nos  Nostoc sp. PCC 7107
         nop  Nostoc sp. PCC 7524
         non  Nostoc sp. NIES-3756
         nfl  Nostoc flagelliforme
         noe  Nostoc sp. CENA543
 
 
 
 
 
 
 
       Trichormus (2)
         ava  Trichormus variabilis
         naz  'Nostoc azollae' 0708
 
 
       Anabaena (4)
         anb  Anabaena sp. 90
         acy  Anabaena cylindrica
         awa  Anabaena sp. WA102
         ann  Anabaena sp. YBS01
 
 
 
 
       Cylindrospermum (1)
         csg  Cylindrospermum stagnale
 
       Calothrix (3)
         calo  Calothrix sp. PCC 7507
         calt  Calothrix sp. PCC 6303
         calh  Calothrix sp. 336/3
 
 
 
       Rivularia (1)
         riv  Rivularia sp. PCC 7116
 
       Fischerella (1)
         fis  Fischerella sp. NIES-3754
 
       Nodularia (1)
         nsp  Nodularia spumigena
 
       Dolichospermum (1)
         dou  Dolichospermum sp. UHCC 0315A
 
       Unclassified Nostocales (1)
         ncn  Nostocales cyanobacterium HT-58-2
 
       Chroococcidiopsis (1)
         cthe  Chroococcidiopsis thermalis
 
       Pleurocapsa (1)
         plp  Pleurocapsa sp. PCC 7327
 
       Stanieria (2)
         scs  Stanieria cyanosphaera
         stan  Stanieria sp. NIES-3757
 
 
       Unclassified Cyanobacteria (2)
         ceo  Cyanobacterium endosymbiont of Epithemia turgida
         cer  Cyanobacterium endosymbiont of Rhopalodia gibberula
 
 
     Melainabacteria (1)
       Unclassified Melainabacteria (1)
         mbf  Candidatus Melainabacteria bacterium MEL.A1
 
     Chloroflexi (30)
       Dehalococcoides (12)
         det  Dehalococcoides mccartyi 195
         deh  Dehalococcoides mccartyi CBDB1
         deb  Dehalococcoides mccartyi BAV1
         dev  Dehalococcoides mccartyi VS
         deg  Dehalococcoides mccartyi GT
         dmc  Dehalococcoides mccartyi BTF08
         dmd  Dehalococcoides mccartyi DCMB5
         dmg  Dehalococcoides mccartyi GY50
         dmx  Dehalococcoides mccartyi CG1
         dmy  Dehalococcoides mccartyi CG4
         dmz  Dehalococcoides mccartyi CG5
         duc  Dehalococcoides sp. UCH007
 
 
 
 
 
 
 
 
 
 
 
 
       Dehalogenimonas (3)
         dly  Dehalogenimonas lykanthroporepellens
         dew  Dehalogenimonas sp. WBC-2
         dfo  Dehalogenimonas formicexedens
 
 
 
       Roseiflexus (2)
         rrs  Roseiflexus sp. RS-1
         rca  Roseiflexus castenholzii
 
 
       Chloroflexus (3)
         cau  Chloroflexus aurantiacus
         chl  Chloroflexus aurantiacus Y-400-fl
         cag  Chloroflexus aggregans
 
 
 
       Herpetosiphon (1)
         hau  Herpetosiphon aurantiacus
 
       Thermomicrobium (1)
         tro  Thermomicrobium roseum
 
       Sphaerobacterineae (1)
         sti  Sphaerobacter thermophilus
 
       Anaerolinea (1)
         atm  Anaerolinea thermophila
 
       Brevefilum (1)
         abat  Brevefilum fermentans
 
       Pelolinea (1)
         psub  Pelolinea submarina
 
       Unclassified Anaerolineaceae (1)
         abao  Anaerolineaceae bacterium oral taxon 439
 
       Caldilinea (1)
         cap  Caldilinea aerophila
 
       Promineofilum (1)
         pbf  Candidatus Promineofilum breve
 
       Unclassified Ktedonobacterales (1)
         kbs  Ktedonobacterales bacterium SCAWS-G2
 
     Deinococcus-Thermus (32)
       Deinococcus (15)
         dra  Deinococcus radiodurans
         dge  Deinococcus geothermalis
         ddr  Deinococcus deserti
         dmr  Deinococcus maricopensis
         dpt  Deinococcus proteolyticus
         dgo  Deinococcus gobiensis
         dpd  Deinococcus peraridilitoris
         dsw  Deinococcus swuensis
         dch  Deinococcus soli
         dab  Deinococcus actinosclerus
         dpu  Deinococcus puniceus
         dez  Deinococcus irradiatisoli
         dwu  Deinococcus wulumuqiensis
         dfc  Deinococcus ficus
         dein  Deinococcus sp. AJ005
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Truepera (1)
         tra  Truepera radiovictrix
 
       Thermus (10)
         tth  Thermus thermophilus HB27
         ttj  Thermus thermophilus HB8
         tts  Thermus thermophilus SG0.5JP17-16
         ttl  Thermus thermophilus JL-18
         tsc  Thermus scotoductus
         thc  Thermus sp. CCB_US3_UF1
         tos  Thermus oshimai
         taq  Thermus aquaticus
         tpar  Thermus parvatiensis
         tbc  Thermus brockianus
 
 
 
 
 
 
 
 
 
 
       Meiothermus (4)
         mrb  Meiothermus ruber DSM 1279
         mre  Meiothermus ruber DSM 1279
         msv  Meiothermus silvanus
         mtai  Meiothermus taiwanensis
 
 
 
 
       Oceanithermus (1)
         opr  Oceanithermus profundus
 
       Marinithermus (1)
         mhd  Marinithermus hydrothermalis
 
     Armatimonadetes (2)
       Chthonomonas (1)
         ccz  Chthonomonas calidirosea
 
       Fimbriimonas (1)
         fgi  Fimbriimonas ginsengisoli
 
     Unclassified Terrabacteria group (1)
       Thermobaculum (1)
         ttr  Thermobaculum terrenum
 
     Chlamydiae (120)
       Chlamydia (114)
         ctr  Chlamydia trachomatis D/UW-3/CX
         ctd  Chlamydia trachomatis D-EC
         ctf  Chlamydia trachomatis D-LC
         ctrd  Chlamydia trachomatis D/SotonD1
         ctro  Chlamydia trachomatis D/SotonD5
         ctrt  Chlamydia trachomatis D/SotonD6
         cta  Chlamydia trachomatis A/HAR-13
         cty  Chlamydia trachomatis A2497
         cra  Chlamydia trachomatis A2497
         ctrq  Chlamydia trachomatis A/363
         ctrx  Chlamydia trachomatis A/5291
         ctrz  Chlamydia trachomatis A/7249
         ctrp  Chlamydia trachomatis L1/1322/p2
         ctlj  Chlamydia trachomatis L1/115
         ctlx  Chlamydia trachomatis L1/224
         ctll  Chlamydia trachomatis L1/440/LN
         ctb  Chlamydia trachomatis 434/Bu
         ctrr  Chlamydia trachomatis L2/25667R
         ctlf  Chlamydia trachomatis L2/434/Bu(f)
         ctli  Chlamydia trachomatis L2/434/Bu(i)
         ctl  Chlamydia trachomatis L2b/UCH-1/proctitis
         ctru  Chlamydia trachomatis L2b/UCH-2
         ctrl  Chlamydia trachomatis L2b/LST
         ctrv  Chlamydia trachomatis L2b/CV204
         ctrm  Chlamydia trachomatis L2b/Ams1
         ctla  Chlamydia trachomatis L2b/Ams2
         ctlm  Chlamydia trachomatis L2b/Ams3
         ctls  Chlamydia trachomatis L2b/Ams4
         ctlz  Chlamydia trachomatis L2b/Ams5
         ctlc  Chlamydia trachomatis L2b/Canada1
         ctln  Chlamydia trachomatis L2b/Canada2
         ctlb  Chlamydia trachomatis L2b/795
         ctlq  Chlamydia trachomatis L2b/8200/07
         cto  Chlamydia trachomatis L2c
         ctrn  Chlamydia trachomatis L3/404/LN
         ctj  Chlamydia trachomatis B/Jali20/OT
         ctz  Chlamydia trachomatis B/TZ1A828/OT
         ctg  Chlamydia trachomatis E/11023
         ctk  Chlamydia trachomatis E/150
         csw  Chlamydia trachomatis Sweden2
         ces  Chlamydia trachomatis E/SW3
         ctrb  Chlamydia trachomatis E/Bour
         ctre  Chlamydia trachomatis E/SotonE4
         ctrs  Chlamydia trachomatis E/SotonE8
         ctec  Chlamydia trachomatis E/C599
         cfs  Chlamydia trachomatis F/SW4
         cfw  Chlamydia trachomatis F/SW5
         ctfw  Chlamydia trachomatis F/SWFPminus
         ctrf  Chlamydia trachomatis F/SotonF3
         ctch  Chlamydia trachomatis F/11-96
         ctn  Chlamydia trachomatis G/11074
         ctq  Chlamydia trachomatis G/11222
         ctv  Chlamydia trachomatis G/9301
         ctw  Chlamydia trachomatis G/9768
         ctrg  Chlamydia trachomatis G/SotonG1
         ctri  Chlamydia trachomatis IU824
         ctra  Chlamydia trachomatis IU888
         ctrh  Chlamydia trachomatis Ia/SotonIa1
         ctrj  Chlamydia trachomatis Ia/SotonIa3
         ctrk  Chlamydia trachomatis K/SotonK1
         ctjt  Chlamydia trachomatis J/6276tet1
         ctcf  Chlamydia trachomatis RC-F/69
         ctfs  Chlamydia trachomatis RC-F(s)/342
         cthf  Chlamydia trachomatis RC-F(s)/852
         ctcj  Chlamydia trachomatis RC-J/943
         cthj  Chlamydia trachomatis RC-J/953
         ctmj  Chlamydia trachomatis RC-J/966
         cttj  Chlamydia trachomatis RC-J/971
         ctjs  Chlamydia trachomatis RC-J(s)/122
         ctrc  Chlamydia trachomatis RC-L2/55
         ctrw  Chlamydia trachomatis RC-L2(s)/3
         ctry  Chlamydia trachomatis RC-L2(s)/46
         ctct  Chlamydia trachomatis C/TW-3
         cmu  Chlamydia muridarum Nigg
         cmur  Chlamydia muridarum Nigg CM972
         cmn  Chlamydia muridarum Nigg 2 MCR
         cmm  Chlamydia muridarum Nigg3 clone G0.1.1
         cmg  Chlamydia muridarum Nigg3 clone G28.38.1
         cmx  Chlamydia muridarum Nigg3
         cmz  Chlamydia muridarum Nigg3 CMUT3-5
         cpn  Chlamydia pneumoniae CWL029
         cpa  Chlamydia pneumoniae AR39
         cpj  Chlamydia pneumoniae J138
         cpt  Chlamydia pneumoniae TW-183
         clp  Chlamydia pneumoniae LPCoLN
         cpm  Chlamydia pecorum E58
         cpec  Chlamydia pecorum P787
         cpeo  Chlamydia pecorum PV3056/3
         cper  Chlamydia pecorum W73
         chp  Chlamydia psittaci 6BC
         chb  Chlamydia psittaci 6BC
         chs  Chlamydia psittaci 01DC11
         chi  Chlamydia psittaci 02DC15
         cht  Chlamydia psittaci 08DC60
         chc  Chlamydia psittaci C19/98
         chr  Chlamydia psittaci RD1
         cpsc  Chlamydia psittaci CP3
         cpsn  Chlamydia psittaci NJ1
         cpsb  Chlamydia psittaci 84/55
         cpsg  Chlamydia psittaci GR9
         cpsm  Chlamydia psittaci M56
         cpsi  Chlamydia psittaci MN
         cpsv  Chlamydia psittaci VS225
         cpsw  Chlamydia psittaci WC
         cpst  Chlamydia psittaci WS/RT/E30
         cpsd  Chlamydia psittaci 01DC12
         cpsa  Chlamydia psittaci Mat116
         cav  Chlamydia avium
         cca  Chlamydia caviae
         cab  Chlamydia abortus S26/3
         cabo  Chlamydia abortus
         cfe  Chlamydia felis Fe/C-56
         cgz  Chlamydia gallinacea
         chla  Chlamydia sp. S15-834C
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Protochlamydia (2)
         pcu  Candidatus Protochlamydia amoebophila
         pnl  Candidatus Protochlamydia naegleriophila
 
 
       Parachlamydia (1)
         puv  Parachlamydia acanthamoebae
 
       Neochlamydia (1)
         ney  Neochlamydia sp. S13
 
       Waddlia (1)
         wch  Waddlia chondrophila
 
       Simkania (1)
         sng  Simkania negevensis
 
     Verrucomicrobia (12)
       Opitutus (1)
         ote  Opitutus terrae
 
       Lacunisphaera (1)
         obg  Lacunisphaera limnophila
 
       Nibricoccus (1)
         vbh  Nibricoccus aquaticus HZ-65
 
       Unclassified Opitutaceae (1)
         obt  Opitutaceae bacterium TAV5
 
       Coraliomargarita (1)
         caa  Coraliomargarita akajimensis
 
       Akkermansia (2)
         amu  Akkermansia muciniphila
         agl  Akkermansia glycaniphila
 
 
       Xiphinematobacter (1)
         xii  Candidatus Xiphinematobacter sp. Idaho Grape
 
       Methylacidiphilum (2)
         min  Methylacidiphilum infernorum
         mkc  Methylacidiphilum kamchatkense
 
 
       Unclassified Verrucomicrobia (2)
         vba  Verrucomicrobia bacterium IMCC26134
         vbs  Verrucomicrobia bacterium S94
 
 
     Planctomycetes (25)
       Rhodopirellula (1)
         rba  Rhodopirellula baltica
 
       Pirellula (2)
         psl  Pirellula staleyi
         pir  Pirellula sp. SH-Sr6A
 
 
       Planctopirus (2)
         plm  Planctopirus limnophila
         peh  Planctopirus ephydatiae
 
 
       Rubinisphaera (1)
         pbs  Rubinisphaera brasiliensis
 
       Planctomyces (2)
         pls  Planctomyces sp. SH-PL14
         plh  Planctomyces sp. SH-PL62
 
 
       Fuerstia (1)
         fmr  Fuerstia marisgermanicae
 
       Thermogutta (1)
         ttf  Thermogutta terrifontis
 
       Roseimaritima (1)
         rul  Roseimaritima ulvae
 
       Gimesia (2)
         gmr  Gimesia maris
         gim  Gimesia sp. E7
 
 
       Mariniblastus (1)
         mff  Mariniblastus fucicola
 
       Gemmata (2)
         ges  Gemmata sp. SH-PL17
         gog  Gemmata obscuriglobus
 
 
       Isosphaera (1)
         ipa  Isosphaera pallida
 
       Singulisphaera (1)
         saci  Singulisphaera acidiphila
 
       Paludisphaera (1)
         pbor  Paludisphaera borealis
 
       Aquisphaera (1)
         agv  Aquisphaera giovannonii
 
       Kuenenia (1)
         kst  Candidatus Kuenenia stuttgartiensis
 
       Phycisphaera (1)
         phm  Phycisphaera mikurensis
 
       Sedimentisphaera (2)
         pbu  Sedimentisphaera cyanobacteriorum L21-RPul-D3
         pbp  Sedimentisphaera salicampi
 
 
       Unclassified Phycisphaerae (1)
         pbas  Phycisphaerae bacterium SM-Chi-D1
 
     Kiritimatiellaeota (1)
       Kiritimatiella (1)
         vbl  Kiritimatiella glycovorans
 
     Lentisphaerae (1)
       Unclassified Victivallales (1)
         vbc  Victivallales bacterium CCUG 44730
 
     Spirochaetes (84)
       Borreliella (19)
         bbu  Borreliella burgdorferi B31
         bbz  Borreliella burgdorferi ZS7
         bbn  Borreliella burgdorferi N40
         bbj  Borreliella burgdorferi JD1
         bbur  Borrelia burgdorferi CA382
         bga  Borreliella bavariensis PBi
         bgb  Borreliella garinii BgVir
         bgn  Borreliella garinii NMJW1
         bgs  Borreliella garinii SZ
         bgc  Borreliella garinii CIP 103362
         baf  Borrelia afzelii (FLI)
         bafz  Borrelia afzelii (Maryland)
         bafh  Borrelia afzelii HLJ01
         baft  Borreliella afzelii Tom3107
         bafe  Borreliella afzelii K78
         bbs  Borreliella bissettii
         bvt  Borreliella valaisiana
         bchi  Borreliella chilensis
         bmay  Borrelia mayonii
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Borrelia (11)
         btu  Borrelia turicatae
         bhr  Borrelia hermsii DAH
         bhi  Borrelia hermsii CC1
         bdu  Borrelia duttonii
         bre  Borrelia recurrentis
         bcw  Borrelia crocidurae
         bmo  Borrelia miyamotoi LB-2001
         bmiy  Borrelia miyamotoi CT14D4
         bpak  Borrelia parkeri
         bane  Borrelia anserina
         btur  Borrelia turcica
 
 
 
 
 
 
 
 
 
 
 
       Treponema (21)
         tpa  Treponema pallidum subsp. pallidum Nichols
         tpw  Treponema pallidum subsp. pallidum Nichols
         tpp  Treponema pallidum subsp. pallidum SS14
         tpu  Treponema pallidum subsp. pallidum DAL-1
         tph  Treponema pallidum subsp. pallidum Chicago
         tpo  Treponema pallidum subsp. pallidum Mexico A
         tpas  Treponema pallidum subsp. pallidum Sea 81-4
         tpc  Treponema pallidum subsp. pertenue CDC2
         tpg  Treponema pallidum subsp. pertenue Gauthier
         tpm  Treponema pallidum subsp. pertenue SamoaD
         tpb  Treponema pallidum Fribourg-Blanc
         tde  Treponema denticola
         tsu  Treponema succinifaciens
         tbe  Treponema brennaborense
         taz  Treponema azotonutricium
         tpi  Treponema primitia
         tpl  Treponema paraluiscuniculi
         tped  Treponema pedis
         scd  Treponema caldarium
         tpk  Treponema putidum
         trm  Treponema sp. OMZ 838
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
       Sediminispirochaeta (1)
         ssm  Sediminispirochaeta smaragdinae
 
       Spirochaeta (4)
         sta  Spirochaeta thermophila DSM 6192
         stq  Spirochaeta thermophila DSM 6578
         sfc  Spirochaeta africana
         sper  Spirochaeta perfilievii
 
 
 
 
       Sphaerochaeta (3)
         sbu  Sphaerochaeta globosa
         scc  Sphaerochaeta coccoides
         sgp  Sphaerochaeta pleomorpha
 
 
 
       Salinispira (1)
         slr  Salinispira pacifica
 
       Oceanispirochaeta (1)
         ock  Oceanispirochaeta sp. K2
 
       Leptospira (13)
         lil  Leptospira interrogans serovar Lai 56601
         lie  Leptospira interrogans serovar Lai IPAV
         lic  Leptospira interrogans serovar Copenhageni
         lis  Leptospira interrogans serovar Linhai
         lbj  Leptospira borgpetersenii JB197
         lbl  Leptospira borgpetersenii L550
         lbi  Leptospira biflexa serovar Patoc Patoc 1 (Paris)
         lbf  Leptospira biflexa serovar Patoc Patoc 1 (Ames)
         lst  Leptospira santarosai
         laj  Leptospira alstonii
         lmay  Leptospira mayottensis
         lkm  Leptospira kmetyi
         lwl  Leptospira weilii
 
 
 
 
 
 
 
 
 
 
 
 
 
       Turneriella (1)
         tpx  Turneriella parva
 
       Brachyspira (9)
         bhy  Brachyspira hyodysenteriae WA1
         bhd  Brachyspira hyodysenteriae ATCC 27164
         brm  Brachyspira murdochii
         bpo  Brachyspira pilosicoli 95/1000
         bpj  Brachyspira pilosicoli B2904
         bpip  Brachyspira pilosicoli P43/6/78
         bpw  Brachyspira pilosicoli WesB
         bip  Brachyspira intermedia
         bhp  Brachyspira hampsonii
 
 
 
 
 
 
 
 
 
     Acidobacteria (11)
       Koribacter (1)
         aba  Candidatus Koribacter versatilis
 
       Acidobacterium (1)
         aca  Acidobacterium capsulatum
 
       Granulicella (2)
         acm  Granulicella tundricola
         gma  Granulicella mallensis
 
 
       Terriglobus (3)
         tsa  Terriglobus saanensis
         trs  Terriglobus roseus
         talb  Terriglobus albidus
 
 
 
       Acidisarcina (1)
         abas  Acidisarcina polymorpha
 
       Solibacter (1)
         sus  Candidatus Solibacter usitatus
 
       Chloracidobacterium (1)
         ctm  Chloracidobacterium thermophilum
 
       Luteitalea (1)
         abac  Luteitalea pratensis