 1. Oxidoreductases
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 2. Transferases
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2.1 Transferring one-carbon groups
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2.2 Transferring aldehyde or ketonic groups
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2.3 Acyltransferases
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2.4 Glycosyltransferases
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2.4.1 Hexosyltransferases
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2.4.2 Pentosyltransferases
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2.4.3 Sialyltransferases
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2.4.99 Transferring other glycosyl groups
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2.4.99.12 lipid IVA 3-deoxy-D-manno-octulosonic acid transferase
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2.4.99.13 (Kdo)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase
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2.4.99.14 (Kdo)2-lipid IVA (2-8) 3-deoxy-D-manno-octulosonic acid transferase
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2.4.99.15 (Kdo)3-lipid IVA (2-4) 3-deoxy-D-manno-octulosonic acid transferase
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2.4.99.16 starch synthase (maltosyl-transferring)
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2.4.99.17 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
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2.4.99.18 dolichyl-diphosphooligosaccharide---protein glycotransferase
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2.4.99.19 undecaprenyl-diphosphooligosaccharide---protein glycotransferase
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2.4.99.20 2'-phospho-ADP-ribosyl cyclase/2'-phospho-cyclic-ADP-ribose transferase
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2.4.99.21 dolichyl-phosphooligosaccharide-protein glycotransferase
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2.4.99.23 lipopolysaccharide heptosyltransferase I
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2.4.99.24 lipopolysaccharide heptosyltransferase II
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2.4.99.25 lipopolysaccharide heptosyltransferase III
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2.4.99.26 O-antigen ligase
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2.4.99.27 O-antigen polymerase Wzy
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2.4.99.28 peptidoglycan glycosyltransferase
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 K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
K04478 sgtB; monofunctional glycosyltransferase [EC:2.4.99.28]
K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
K12551 sgtA; monofunctional glycosyltransferase [EC:2.4.99.28]
K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
K18770 pbpD; penicillin-binding protein 4 [EC:2.4.99.28 3.4.16.4]
K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4]
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2.5 Transferring alkyl or aryl groups, other than methyl groups
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2.6 Transferring nitrogenous groups
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2.7 Transferring phosphorus-containing groups
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2.8 Transferring sulfur-containing groups
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2.9 Transferring selenium-containing groups
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2.10 Transferring molybdenum- or tungsten-containing groups
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3. Hydrolases
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3.1 Acting on ester bonds
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3.2 Glycosylases
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3.3 Acting on ether bonds
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3.4 Acting on peptide bonds (peptidases)
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3.4.11 Aminopeptidases
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3.4.13 Dipeptidases
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3.4.14 Dipeptidyl-peptidases and tripeptidyl-peptidases
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3.4.15 Peptidyl-dipeptidases
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3.4.16 Serine-type carboxypeptidases
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3.4.16.2 lysosomal Pro-Xaa carboxypeptidase
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3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
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K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
K02545 mecA; penicillin-binding protein 2 prime [EC:3.4.16.4]
K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
K07258 dacC, dacA, dacD; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
K18770 pbpD; penicillin-binding protein 4 [EC:2.4.99.28 3.4.16.4]
K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4]
K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
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3.4.16.5 carboxypeptidase C
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3.4.16.6 carboxypeptidase D
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3.4.17 Metallocarboxypeptidases
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3.4.18 Cysteine-type carboxypeptidases
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3.4.19 Omega peptidases
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3.4.21 Serine endopeptidases
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3.4.22 Cysteine endopeptidases
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3.4.23 Aspartic endopeptidases
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3.4.24 Metalloendopeptidases
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3.4.25 Threonine endopeptidases
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3.4.26 Glutamic endopeptidases
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3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
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3.6 Acting on acid anhydrides
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3.7 Acting on carbon-carbon bonds
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3.8 Acting on halide bonds
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3.9 Acting on phosphorus-nitrogen bonds
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3.10 Acting on sulfur-nitrogen bonds
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3.11 Acting on carbon-phosphorus bonds
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3.12 Acting on sulfur-sulfur bonds
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3.13 Acting on carbon-sulfur bonds
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4. Lyases
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5. Isomerases
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6. Ligases
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7. Translocases
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Enzymes