 Aspartic peptidases
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 Cysteine peptidases
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Family C1: papain family
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Family C2: calpain family
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Family C3: picornain family
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Family C4: NIa protease family
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Family C5
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Family C9
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Family C10: streptopain family
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Family C11: clostripain family
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Family C12: ubiquitin C-terminal hydrolase family
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Family C13: legumain family
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Family C14: caspase family
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Family C15: pyroglutamyl peptidase I family
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Family C16
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Family C19: ubiquitin-specific protease family
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 K11836 USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.4.19.12]
K11870 UBP1; ubiquitin carboxyl-terminal hydrolase 1 [EC:3.4.19.12]
K11837 USP6_32; ubiquitin carboxyl-terminal hydrolase 6/32 [EC:3.4.19.12]
K11835 USP4_11, UBP12; ubiquitin carboxyl-terminal hydrolase 4/11 [EC:3.4.19.12]
K11839 USP8, UBP5; ubiquitin carboxyl-terminal hydrolase 8 [EC:3.4.19.12]
K11833 USP2; ubiquitin carboxyl-terminal hydrolase 2 [EC:3.4.19.12]
K11843 USP14, UBP6; ubiquitin carboxyl-terminal hydrolase 14 [EC:3.4.19.12]
K11838 USP7, UBP15; ubiquitin carboxyl-terminal hydrolase 7 [EC:3.4.19.12]
K11840 USP9_24; ubiquitin carboxyl-terminal hydrolase 9/24 [EC:3.4.19.12]
K11841 USP10, UBP3; ubiquitin carboxyl-terminal hydrolase 10 [EC:3.4.19.12]
K11832 USP1; ubiquitin carboxyl-terminal hydrolase 1 [EC:3.4.19.12]
K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46 [EC:3.4.19.12]
K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12]
K21343 USP15; ubiquitin carboxyl-terminal hydrolase 15 [EC:3.4.19.12]
K11845 USP17, DUB3; ubiquitin carboxyl-terminal hydrolase 17 [EC:3.4.19.12]
K11847 USP19; ubiquitin carboxyl-terminal hydrolase 19 [EC:3.4.19.12]
K11848 USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33 [EC:3.4.19.12]
K11986 USP3; ubiquitin carboxyl-terminal hydrolase 3 [EC:3.4.19.12]
K11846 USP18_41; ubiquitin carboxyl-terminal hydrolase 18/41 [EC:3.4.19.12]
K21634 USP21; ubiquitin carboxyl-terminal hydrolase 21 [EC:3.4.19.12]
K11366 USP22_27_51, UBP8; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
K11849 USP25; ubiquitin carboxyl-terminal hydrolase 25 [EC:3.4.19.12]
K11850 USP26_29_37; ubiquitin carboxyl-terminal hydrolase 26/29/37 [EC:3.4.19.12]
K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12]
K21122 USP28; ubiquitin carboxyl-terminal hydrolase 28 [EC:3.4.19.12]
K11857 USP47; ubiquitin carboxyl-terminal hydrolase 47 [EC:3.4.19.12]
K11854 USP35_38; ubiquitin carboxyl-terminal hydrolase 35/38 [EC:3.4.19.12]
K11834 USP44_49; ubiquitin carboxyl-terminal hydrolase 44/49 [EC:3.4.19.12]
K11851 USP30; ubiquitin carboxyl-terminal hydrolase 30 [EC:3.4.19.12]
K11853 USP34; ubiquitin carboxyl-terminal hydrolase 34 [EC:3.4.19.12]
K11858 USP48; ubiquitin carboxyl-terminal hydrolase 48 [EC:3.4.19.12]
K11869 USP40; ubiquitin carboxyl-terminal hydrolase 40 [EC:3.4.19.12]
K11852 USP31; ubiquitin carboxyl-terminal hydrolase 31 [EC:3.4.19.12]
K11873 UBP10; ubiquitin carboxyl-terminal hydrolase 10 [EC:3.4.19.12]
K11856 USP43; ubiquitin carboxyl-terminal hydrolase 43 [EC:3.4.19.12]
K11871 UBP7_11; ubiquitin carboxyl-terminal hydrolase 7/11 [EC:3.4.19.12]
K11872 UBP9_13; ubiquitin carboxyl-terminal hydrolase 9/13 [EC:3.4.19.12]
K11874 UBP16; ubiquitin carboxyl-terminal hydrolase 16 [EC:3.4.19.12]
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Family C25: gingipain family
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Family C26: gamma-glutamyl hydrolase family
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Family C27
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Family C30
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Family C37
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Family C39
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Family C40
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Family C44
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Family C45
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Family C46: hedgehog family
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Family C47: staphopain family
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Family C48: Ulp1 endopeptidase family
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Family C50: separase family
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Family C54: Aut2 peptidase family
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Family C55: YopJ protease family
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Family C56: PfpI endopeptidase family
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Family C57: vaccinia virus I7 peptidase family
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Family C58
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Family C59
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Family C60
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Family C63
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Family C64
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Family C65
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Family C67
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Family C69
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Family C70
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Family C75
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Family C76
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Family C78
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Family C79
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Family C82
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Family C83
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Family C85
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Family C86
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Family C88
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Family C89
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Family C97
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Family C98
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Family C110
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Glutamic peptidases
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Metallo peptidases
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Asparagine peptide lyases
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Mixed peptidases
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Serine peptidases
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Threonine peptidases
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Peptidases of unknown catalytic type
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Peptidase inhibitors
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Peptidases and Inhibitors