 Eukaryotic type
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 Basic leucine zipper (bZIP)
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Basic helix-loop-helix (bHLH)
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Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
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Other basic domains
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Zinc finger
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Helix-turn-helix
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Homeo domain ANTP: HOXL
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 K21950 HOXA9; homeobox protein Hox-A9
K09294 HOX_9; homeobox protein HoxB/C/D9
K17443 HOXA10; homrobox protein Hox-A10
K17444 HOXC10; homrobox protein Hox-C10
K09295 HOXD10; homrobox protein Hox-D10
K21951 HOXA11; homeobox protein Hox-A11
K09296 HOX_11; homeobox protein HoxC/D11
K09297 HOX_12; homeobox protein HoxC/D12
K09298 HOX_13; homeobox protein HoxA/B/C/D13
K09301 HOX_1; homeobox protein HoxA/B/D1
K09302 HOX_2; homeobox protein HoxA/B2
K09303 HOX_3; homeobox protein HoxA/B/D3
K09304 HOX_4; homeobox protein HoxA/B/C/D4
K09305 HOX_5; homeobox protein HoxA/B/C5
K09306 HOX_6; homeobox protein HoxA/B/C6
K09307 HOX_7; homeobox protein HoxA/B7
K09308 HOX_8; homeobox protein HoxB/C/D8
K09310 GSH; homeobox protein GSH
K07594 IPF1, PDX1; insulin promoter factor 1
K09312 CDX1_4; homeobox protein CDX1/4
K22234 CDX2; homeobox protein CDX2
K09320 EVX; homeobox even-skipped homolog protein
K09321 GBX; homeobox protein GBX
K08025 HLXB9, HB9; homeobox protein HB9
K09322 MEOX, MOX; homeobox protein MOX
K09300 ABDB; homeobox protein abdominal-B and related proteins
K18659 BCD; homeotic protein bicoid
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Homeo domain ANTP: NKL
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Homeo domain Paired-related
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Homeo domain LIM
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Homeo domain POU
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Homeo domain SINE
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Homeo domain ZF
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Homeo domain CUT
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Homeo domain PROS
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Homeo domain TALE
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Homeo domain other
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Fork head/winged helix developmental regulators
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Fork head/winged helix tissue-specific regulators
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Fork head/winged helix cell cycle-controlling factors, E2F
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Fork head/winged helix cell cycle-controlling factors, DP
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Fork head/winged helix other regulators
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Heat shock factors
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Tryptophan clusters Myb, Myb-factors
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Tryptophan clusters Myb, Myb-like factors
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Tryptophan clusters Ets-type
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Tryptophan clusters interferon-regulating factors
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TEA domain
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ARID
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beta-Scaffold factors with minor groove contacts
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Other transcription factors
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Prokaryotic type
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Transcription Factors