 Eukaryotic type
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 Basic leucine zipper (bZIP)
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Basic helix-loop-helix (bHLH)
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Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
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Other basic domains
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Zinc finger
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Helix-turn-helix
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Homeo domain ANTP: HOXL
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Homeo domain ANTP: NKL
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Homeo domain Paired-related
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 K09452 ARX; homeobox protein aristaless-related
K09323 ALX3; homeobox protein aristaless-like 3
K09451 ALX4; homeobox protein aristaless-like 4
K09324 GSC; homeobox protein goosecoid
K09325 GSCL; homeobox protein goosecoid-like
K09326 OTX1; homeobox protein OTX1
K18490 OTX2; homeobox protein OTX2
K09327 PROP1; homeobox protein prophet of Pit-1
K09328 UNC4; homeobox protein Unc-4
K09329 PRRX, PMX; paired mesoderm homeobox protein
K09330 PHOX2, PMX2; paired mesoderm homeobox protein 2
K09331 SHOX; short stature homeobox protein
K09332 RAX, RX; retina and anterior neural fold homeobox protein
K09333 RAXL; retina and anterior neural fold homeobox-like protein
K09334 ALX1, CART1; ALX homeobox protein 1
K09335 VSX1; visual system homeobox protein 1
K09336 VSX2, CHX10; visual system homeobox protein 2
K09337 CRX; cone-rod homeobox protein
K18491 ESX1; homeobox protein ESX1
K24199 NOBOX; homeobox protein NOBOX
K09356 PITX1; paired-like homeodomain transcription factor 1
K04686 PITX2; paired-like homeodomain transcription factor 2
K09357 PITX3; paired-like homeodomain transcription factor 3
K09354 HESX1; homeobox protein expressed in ES cells 1
K24892 ARGFX; arginine-fifty homeobox
K24893 DMBX1; diencephalon/mesencephalon homeobox protein 1
K24894 DPRX; divergent paired-related homeobox
K24895 DRGX, PRRXL1; dorsal root ganglia homeobox protein
K24896 DUX; double homeobox protein
K24897 HOPX; homeodomain-only protein
K24898 ISX; intestine-specific homeobox
K24899 LEUTX; leucine-twenty homeobox
K24900 MIXL1; homeobox protein MIXL1
K24901 OTP; homeobox protein orthopedia
K24902 RHOXF1; rhox homeobox family member 1
K24903 RHOXF2; rhox homeobox family member 2
K24904 SEBOX; homeobox protein SEBOX
K24905 TPRX1; tetra-peptide repeat homeobox protein 1
K09382 PAX1_9; paired box protein 1/9
K15608 PAX2; paired box protein 2
K09381 PAX3_7; paired box protein 3/7
K08032 PAX4; paired box protein 4
K09383 PAX5; paired box protein 5
K08031 PAX6; paired box protein 6
K09293 PAX8; paired box protein 8
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Homeo domain LIM
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Homeo domain POU
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Homeo domain SINE
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Homeo domain ZF
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Homeo domain CUT
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Homeo domain PROS
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Homeo domain TALE
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Homeo domain other
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Fork head/winged helix developmental regulators
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Fork head/winged helix tissue-specific regulators
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Fork head/winged helix cell cycle-controlling factors, E2F
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Fork head/winged helix cell cycle-controlling factors, DP
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Fork head/winged helix other regulators
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Heat shock factors
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Tryptophan clusters Myb, Myb-factors
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Tryptophan clusters Myb, Myb-like factors
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Tryptophan clusters Ets-type
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Tryptophan clusters interferon-regulating factors
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TEA domain
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ARID
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beta-Scaffold factors with minor groove contacts
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Other transcription factors
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Prokaryotic type
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Transcription Factors