KEGG Orthology (KO) - Lactobacillus casei W56

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:lcw03030]
     03410 Base excision repair [PATH:lcw03410]
     03420 Nucleotide excision repair [PATH:lcw03420]
     03430 Mismatch repair [PATH:lcw03430]
     03440 Homologous recombination [PATH:lcw03440]
       BN194_17390 recJ; Single-stranded-DNA-specific exonuclease recJ
       BN194_00090 ssb2; Single-stranded DNA-binding protein 2
       BN194_00110 ssb; Single-stranded DNA-binding protein
       BN194_00050 recF; DNA replication and repair protein recF
       BN194_16980 recO; DNA repair protein recO
       BN194_23970 recR; Recombination protein RecR
       BN194_27650 recA_2; Protein RecA
       BN194_10080 recA; Protein RecA
       BN194_18930 polA; DNA polymerase I
       BN194_08350 ruvA; Holliday junction ATP-dependent DNA helicase RuvA
       BN194_08360 ruvB; Holliday junction ATP-dependent DNA helicase RuvB
       BN194_17950 recG; ATP-dependent DNA helicase recG
       BN194_14970 yrrC; Uncharacterized protein yrrC
       BN194_22190 recD; Putative exodeoxyribonuclease V
       BN194_15560 dnaE; DNA polymerase III subunit alpha
       BN194_17600 polC; DNA polymerase III polC-type
       BN194_00020 dnaN; DNA polymerase III subunit beta
       BN194_23990 dnaX; DNA polymerase III subunit gamma/tau
       BN194_15240 yqeN; Uncharacterized protein yqeN
       BN194_23930 holB; DNA polymerase III subunit delta'
       BN194_11380 Putative uncharacterized protein
       BN194_18070 priA; Primosomal protein N'
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
     03450 Non-homologous end-joining
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:lcw03000]
     03021 Transcription machinery [BR:lcw03021]
     03019 Messenger RNA biogenesis [BR:lcw03019]
     03041 Spliceosome
     03011 Ribosome [BR:lcw03011]
     03009 Ribosome biogenesis [BR:lcw03009]
     03016 Transfer RNA biogenesis [BR:lcw03016]
     03012 Translation factors [BR:lcw03012]
     03110 Chaperones and folding catalysts [BR:lcw03110]
     04131 Membrane trafficking [BR:lcw04131]
     04121 Ubiquitin system
     03051 Proteasome
     03032 DNA replication proteins [BR:lcw03032]
     03036 Chromosome and associated proteins [BR:lcw03036]
     03400 DNA repair and recombination proteins [BR:lcw03400]
       BN194_11330 ung; Uracil-DNA glycosylase
       BN194_17270 mpg; Putative 3-methyladenine DNA glycosylase
       BN194_07590 yfhQ; Probable A/G-specific adenine glycosylase YfhQ
       BN194_16740 nth; Probable endonuclease III
       BN194_26860 mutT; MutT/nudix family protein
       BN194_27160 Phosphohydrolase (MutT/nudix family protein)
       BN194_26850 NUDIX family hydrolase
       BN194_24640 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase
       BN194_05050 tag; DNA-3-methyladenine glycosylase
       BN194_23490 guaA_2; Probable GMP synthase
       BN194_18920 hypothetical protein
       BN194_11390 exoA; Exodeoxyribonuclease
       BN194_17070 nfo; Probable endonuclease 4
       BN194_17390 recJ; Single-stranded-DNA-specific exonuclease recJ
       BN194_11930 ligA; DNA ligase
       BN194_18930 polA; DNA polymerase I
       BN194_27500 uvrA_3; UvrABC system protein A
       BN194_10450 uvrA; UvrABC system protein A
       BN194_10440 uvrB; UvrABC system protein B
       BN194_15400 uvrC; UvrABC system protein C
       BN194_11920 pcrA; ATP-dependent DNA helicase pcrA
       BN194_21130 helD; Helicase IV
       BN194_26340 rpoB; DNA-directed RNA polymerase subunit beta
       BN194_26330 rpoC; DNA-directed RNA polymerase subunit beta'
       BN194_25960 rpoA; DNA-directed RNA polymerase subunit alpha
       BN194_26810 DNA-directed RNA polymerase delta subunit
       BN194_18100 rpoZ; DNA-directed RNA polymerase subunit omega
       BN194_26540 mfd; Transcription-repair-coupling factor
       BN194_23720 mutS; DNA mismatch repair protein MutS
       BN194_08560 mutS2; MutS2 protein
       BN194_23710 mutL; DNA mismatch repair protein mutL
       BN194_18200 xseA; Exodeoxyribonuclease 7 large subunit
       BN194_18190 xseB; Exodeoxyribonuclease 7 small subunit
       BN194_15560 dnaE; DNA polymerase III subunit alpha
       BN194_17600 polC; DNA polymerase III polC-type
       BN194_00020 dnaN; DNA polymerase III subunit beta
       BN194_15240 yqeN; Uncharacterized protein yqeN
       BN194_23930 holB; DNA polymerase III subunit delta'
       BN194_11380 Putative uncharacterized protein
       BN194_23990 dnaX; DNA polymerase III subunit gamma/tau
       BN194_00090 ssb2; Single-stranded DNA-binding protein 2
       BN194_00110 ssb; Single-stranded DNA-binding protein
       BN194_14970 yrrC; Uncharacterized protein yrrC
       BN194_22190 recD; Putative exodeoxyribonuclease V
       BN194_27650 recA_2; Protein RecA
       BN194_10080 recA; Protein RecA
       BN194_08350 ruvA; Holliday junction ATP-dependent DNA helicase RuvA
       BN194_08360 ruvB; Holliday junction ATP-dependent DNA helicase RuvB
       BN194_18070 priA; Primosomal protein N'
       BN194_07540 SMC domain protein
       BN194_07530 sbcD; Nuclease sbcCD subunit D
       BN194_24630 radA; DNA repair protein RadA homolog
       BN194_00050 recF; DNA replication and repair protein recF
       BN194_17950 recG; ATP-dependent DNA helicase recG
       BN194_16980 recO; DNA repair protein recO
       BN194_23970 recR; Recombination protein RecR
       BN194_18160 recN; DNA repair protein recN
       BN194_16710 recU; Holliday junction resolvase recU
       BN194_16800 addA; ATP-dependent helicase/nuclease subunit A
       BN194_16810 rexB; ATP-dependent helicase/deoxyribonuclease subunit B
       BN194_00070 gyrA; DNA gyrase subunit A
       BN194_00060 gyrB; DNA gyrase subunit B
       BN194_15970 topA; DNA topoisomerase 1
       BN194_15740 hup; DNA-binding protein HU
       BN194_12800 yqaK_2; Uncharacterized protein yqaK
       BN194_09410 yqaK; Uncharacterized protein yqaK
       BN194_12160 recQ; Probable ATP-dependent DNA helicase recQ
       BN194_15690 recS; Probable ATP-dependent DNA helicase recS
       BN194_08430 dinB; DNA polymerase IV
       BN194_11870 uvrX; Putative UV-damage repair protein uvrX
       BN194_P0510 uvrX; Putative UV-damage repair protein uvrX
       BN194_07970 lexA; LexA repressor
       BN194_19550 recX; Regulatory protein recX
       BN194_16790 DNA-directed DNA polymerase III epsilon subunit
       BN194_16600 nrdE2; Ribonucleoside-diphosphate reductase subunit alpha 2
       BN194_16610 nrdF; Ribonucleoside-diphosphate reductase subunit beta
       BN194_08450 nrnA; Bifunctional oligoribonuclease and PAP phosphatase nrnA
       BN194_29210 nrnA_2; Bifunctional oligoribonuclease and PAP phosphatase nrnA
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:3.1.-.- 3.6.4.12]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:3.1.-.- 3.6.4.12]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K07455 recT; recombination protein RecT
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
     03029 Mitochondrial biogenesis [BR:lcw03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: January 27, 2020