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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:nmg03030]
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 Nmag_1229 dnaG; DNA primase DnaG
Nmag_0309 rnhA2; ribonuclease H, type 1
Nmag_3678 rnhA3; ribonuclease H, type 1
Nmag_2705 rnhB; ribonuclease H, type 2
Nmag_2085 ligA; DNA ligase (NAD)
Nmag_2433 polB; DNA-directed DNA polymerase B (intein-containing)
Nmag_1933 polD1; DNA-directed DNA polymerase D exonuclease subunit DP1
Nmag_1995 polD2; DNA-directed DNA polymerase D large subunit (intein-containing)
Nmag_2196 mcm1; ATP-dependent DNA helicase MCM (intein-containing)
Nmag_0237 mcm2; ATP-dependent DNA helicase MCM
Nmag_0410 priS; DNA primase small subunit
Nmag_2038 priL; DNA primase large subunit
Nmag_2204 rpa2; replication protein A
Nmag_4211 pcn2; DNA polymerase sliding clamp phiCh1-VP59
Nmag_2041 pcn1; DNA polymerase sliding clamp
Nmag_1868 rfcC; replication factor C small subunit
Nmag_1910 rfcA; replication factor C small subunit
Nmag_0729 rfcB; replication factor C large subunit
Nmag_1059 dna2; ATP-dependent DNA helicase Dna2
Nmag_3231 fen1; flap endonuclease Fen1
Nmag_0608 ligB; DNA ligase (ATP)
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K02316 dnaG; DNA primase [EC:2.7.7.101]
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7]
K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7]
K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
K02683 priS; DNA primase small subunit [EC:2.7.7.102]
K18882 priL; DNA primase large subunit
K07466 RFA1; replication factor A1
K04802 PCNA; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen
K04801 rfcS; replication factor C small subunit
K04801 rfcS; replication factor C small subunit
K04800 rfcL; replication factor C large subunit
K10742 DNA2; DNA replication ATP-dependent helicase/nuclease Dna2 [EC:5.6.2.3 3.1.-.-]
K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
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03410 Base excision repair [PATH:nmg03410]
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Nmag_0523 DNA N-glycosylase
Nmag_0317 nthB; endonuclease III
Nmag_3237 nthA; endonuclease III
Nmag_0037 mutY; A/G-specific adenine glycosylase
Nmag_4211 pcn2; DNA polymerase sliding clamp phiCh1-VP59
Nmag_2041 pcn1; DNA polymerase sliding clamp
Nmag_3231 fen1; flap endonuclease Fen1
Nmag_0608 ligB; DNA ligase (ATP)
Nmag_3118 DNA N-glycosylase
Nmag_1447 udg1; uracil-DNA glycosylase
Nmag_1747 udg2; uracil-DNA glycosylase
Nmag_3342 uracil-DNA glycosylase superfamily protein
Nmag_0633 uracil-DNA glycosylase superfamily protein
Nmag_0969 apn1; endonuclease 4
Nmag_2008 recJ1; single-stranded-DNA-specific exonuclease RecJ1
Nmag_2085 ligA; DNA ligase (NAD)
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K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K04802 PCNA; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen
K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03420 Nucleotide excision repair [PATH:nmg03420]
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Nmag_1263 uvrA; UvrABC system protein A
Nmag_2070 uvrB; UvrABC system protein B
Nmag_2078 uvrC; UvrABC system protein C
Nmag_1397 uvrD; repair helicase UvrD
Nmag_2085 ligA; DNA ligase (NAD)
Nmag_3039 rad25b; DNA repair helicase Rad25
Nmag_1918 rad3a; DNA repair helicase Rad3
Nmag_1769 rad3b; DNA repair helicase Rad3
Nmag_2204 rpa2; replication protein A
Nmag_4211 pcn2; DNA polymerase sliding clamp phiCh1-VP59
Nmag_2041 pcn1; DNA polymerase sliding clamp
Nmag_0608 ligB; DNA ligase (ATP)
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K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K07466 RFA1; replication factor A1
K04802 PCNA; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
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03430 Mismatch repair [PATH:nmg03430]
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Nmag_0330 mutS1a; DNA mismatch repair protein MutS
Nmag_1284 mutS1b; DNA mismatch repair protein MutS
Nmag_1162 mutS5b; DNA mismatch repair protein MutS
Nmag_2063 mutS5a; DNA mismatch repair protein MutS
Nmag_1289 mutL; DNA mismatch repair protein MutL
Nmag_1397 uvrD; repair helicase UvrD
Nmag_2008 recJ1; single-stranded-DNA-specific exonuclease RecJ1
Nmag_2085 ligA; DNA ligase (NAD)
Nmag_4211 pcn2; DNA polymerase sliding clamp phiCh1-VP59
Nmag_2041 pcn1; DNA polymerase sliding clamp
Nmag_2204 rpa2; replication protein A
Nmag_0608 ligB; DNA ligase (ATP)
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K03555 mutS; DNA mismatch repair protein MutS
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K04802 PCNA; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen
K07466 RFA1; replication factor A1
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
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03440 Homologous recombination [PATH:nmg03440]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:nmg03000]
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03021 Transcription machinery [BR:nmg03021]
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03019 Messenger RNA biogenesis [BR:nmg03019]
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03041 Spliceosome [BR:nmg03041]
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03011 Ribosome [BR:nmg03011]
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03009 Ribosome biogenesis [BR:nmg03009]
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03016 Transfer RNA biogenesis [BR:nmg03016]
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03012 Translation factors [BR:nmg03012]
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03110 Chaperones and folding catalysts [BR:nmg03110]
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04131 Membrane trafficking [BR:nmg04131]
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04121 Ubiquitin system [BR:nmg04121]
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03051 Proteasome [BR:nmg03051]
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03032 DNA replication proteins [BR:nmg03032]
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Nmag_2204 rpa2; replication protein A
Nmag_0309 rnhA2; ribonuclease H, type 1
Nmag_3678 rnhA3; ribonuclease H, type 1
Nmag_4211 pcn2; DNA polymerase sliding clamp phiCh1-VP59
Nmag_2041 pcn1; DNA polymerase sliding clamp
Nmag_1059 dna2; ATP-dependent DNA helicase Dna2
Nmag_3231 fen1; flap endonuclease Fen1
Nmag_0608 ligB; DNA ligase (ATP)
Nmag_4233 site-specific DNA-methyltransferase (cytosine-specific) phiCh1-VP80
Nmag_2503 nop10; tRNA/rRNA pseudouridine synthase complex protein Nop10
Nmag_0271 cbf5; tRNA/rRNA pseudouridine synthase Cbf5
Nmag_1229 dnaG; DNA primase DnaG
Nmag_0918 orc3; Orc1-type DNA replication protein
Nmag_3611 orc9; Orc1-type DNA replication protein
Nmag_0001 orc1; Orc1-type DNA replication protein
Nmag_0368 orc2; Orc1-type DNA replication protein
Nmag_3963 orc10; Orc1-type DNA replication protein
Nmag_2065 orc6; Orc1-type DNA replication protein
Nmag_1930 orc5; Orc1-type DNA replication protein
Nmag_2323 orc7; Orc1-type DNA replication protein
Nmag_1622 orc4; Orc1-type DNA replication protein
Nmag_2694 orc8; Orc1-type DNA replication protein
Nmag_2196 mcm1; ATP-dependent DNA helicase MCM (intein-containing)
Nmag_0237 mcm2; ATP-dependent DNA helicase MCM
Nmag_0410 priS; DNA primase small subunit
Nmag_2038 priL; DNA primase large subunit
Nmag_0409 ginS; DNA replication factor GINS
Nmag_2705 rnhB; ribonuclease H, type 2
Nmag_2085 ligA; DNA ligase (NAD)
Nmag_2433 polB; DNA-directed DNA polymerase B (intein-containing)
Nmag_1995 polD2; DNA-directed DNA polymerase D large subunit (intein-containing)
Nmag_1933 polD1; DNA-directed DNA polymerase D exonuclease subunit DP1
Nmag_0729 rfcB; replication factor C large subunit
Nmag_1868 rfcC; replication factor C small subunit
Nmag_1910 rfcA; replication factor C small subunit
Nmag_0305 gyrA; DNA gyrase subunit A
Nmag_0306 gyrB; DNA gyrase subunit B
Nmag_0640 top6A; DNA topoisomerase 6 subunit A
Nmag_0639 top6B; DNA topoisomerase 6 subunit B
Nmag_1686 homolog to DNA topoisomerase 1
Nmag_2461 topA; DNA topoisomerase 1
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K07466 RFA1; replication factor A1
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K04802 PCNA; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen
K10742 DNA2; DNA replication ATP-dependent helicase/nuclease Dna2 [EC:5.6.2.3 3.1.-.-]
K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K10725 cdc6A; archaeal cell division control protein 6
K10725 cdc6A; archaeal cell division control protein 6
K10725 cdc6A; archaeal cell division control protein 6
K10725 cdc6A; archaeal cell division control protein 6
K10725 cdc6A; archaeal cell division control protein 6
K10725 cdc6A; archaeal cell division control protein 6
K10725 cdc6A; archaeal cell division control protein 6
K10725 cdc6A; archaeal cell division control protein 6
K10725 cdc6A; archaeal cell division control protein 6
K10725 cdc6A; archaeal cell division control protein 6
K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
K02683 priS; DNA primase small subunit [EC:2.7.7.102]
K18882 priL; DNA primase large subunit
K09723 ginS; DNA replication factor GINS
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7]
K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7]
K04800 rfcL; replication factor C large subunit
K04801 rfcS; replication factor C small subunit
K04801 rfcS; replication factor C small subunit
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2]
K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
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03036 Chromosome and associated proteins [BR:nmg03036]
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03400 DNA repair and recombination proteins [BR:nmg03400]
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Nmag_2347 ogt2; putative methylated-DNA--protein-cysteine methyltransferase
Nmag_2819 ogt1; putative methylated-DNA--protein-cysteine methyltransferase
Nmag_0575 phr2; deoxyribodipyrimidine photolyase
Nmag_0037 mutY; A/G-specific adenine glycosylase
Nmag_0523 DNA N-glycosylase
Nmag_0317 nthB; endonuclease III
Nmag_3237 nthA; endonuclease III
Nmag_4211 pcn2; DNA polymerase sliding clamp phiCh1-VP59
Nmag_2041 pcn1; DNA polymerase sliding clamp
Nmag_3231 fen1; flap endonuclease Fen1
Nmag_0608 ligB; DNA ligase (ATP)
Nmag_3039 rad25b; DNA repair helicase Rad25
Nmag_1918 rad3a; DNA repair helicase Rad3
Nmag_1769 rad3b; DNA repair helicase Rad3
Nmag_2204 rpa2; replication protein A
Nmag_2524 NUDIX family hydrolase
Nmag_1423 NUDIX family hydrolase
Nmag_1593 NUDIX family hydrolase
Nmag_1337 dut; dUTP diphosphatase
Nmag_1447 udg1; uracil-DNA glycosylase
Nmag_1747 udg2; uracil-DNA glycosylase
Nmag_3342 uracil-DNA glycosylase superfamily protein
Nmag_0633 uracil-DNA glycosylase superfamily protein
Nmag_3118 DNA N-glycosylase
Nmag_0969 apn1; endonuclease 4
Nmag_1127 nfi; endonuclease V
Nmag_2008 recJ1; single-stranded-DNA-specific exonuclease RecJ1
Nmag_2085 ligA; DNA ligase (NAD)
Nmag_1263 uvrA; UvrABC system protein A
Nmag_2070 uvrB; UvrABC system protein B
Nmag_2078 uvrC; UvrABC system protein C
Nmag_1397 uvrD; repair helicase UvrD
Nmag_0330 mutS1a; DNA mismatch repair protein MutS
Nmag_1284 mutS1b; DNA mismatch repair protein MutS
Nmag_1162 mutS5b; DNA mismatch repair protein MutS
Nmag_2063 mutS5a; DNA mismatch repair protein MutS
Nmag_1289 mutL; DNA mismatch repair protein MutL
Nmag_2437 rad50; DNA double-strand break repair ATPase Rad50
Nmag_2438 mre11; DNA double-strand break repair protein Mre11
Nmag_2400 UvrD/REP family helicase
Nmag_1831 radA; DNA repair and recombination protein RadA
Nmag_0077 radB; DNA repair and recombination protein RadB
Nmag_1845 hjc; Holliday junction resolvase Hjc
Nmag_1964 hel308a; ATP-dependent DNA helicase Hel308
Nmag_0305 gyrA; DNA gyrase subunit A
Nmag_0306 gyrB; DNA gyrase subunit B
Nmag_1686 homolog to DNA topoisomerase 1
Nmag_2461 topA; DNA topoisomerase 1
Nmag_0629 polY; DNA-directed DNA polymerase Y
Nmag_1134 polX; DNA-directed DNA polymerase X
Nmag_1016 lhr2; ATP-dependent DNA helicase (intein-containing)
Nmag_3388 lhr1; ATP-dependent DNA helicase
Nmag_0059 nrdJ; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (intein-containing)
Nmag_2657 nrdA; ribonucleoside-diphosphate reductase alpha subunit
Nmag_3412 nrdB3; putative ribonucleoside-diphosphate reductase beta subunit
Nmag_0835 nrdB2; putative ribonucleoside-diphosphate reductase beta subunit
Nmag_2656 nrdB1; ribonucleoside-diphosphate reductase beta subunit
Nmag_1108 nreA; DNA repair protein NreA
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K04802 PCNA; proliferating cell nuclear antigen
K04802 PCNA; proliferating cell nuclear antigen
K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K07466 RFA1; replication factor A1
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K04483 radA; DNA repair protein RadA
K04484 radB; DNA repair protein RadB
K03552 hjr; holliday junction resolvase [EC:3.1.21.10]
K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]
K02347 polX; DNA polymerase (family X)
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K22585 nreA; DNA repair protein NreA
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03029 Mitochondrial biogenesis [BR:nmg03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Natrialba magadii