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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:ppo03030]
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03410 Base excision repair [PATH:ppo03410]
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03420 Nucleotide excision repair [PATH:ppo03420]
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03430 Mismatch repair [PATH:ppo03430]
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03440 Homologous recombination [PATH:ppo03440]
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 PPM_3852 recJ; single-stranded-DNA-specific exonuclease RecJ
PPM_5054 ssb; Single-stranded DNA-binding protein SSB
PPM_p0185 ssb1; single-stranded DNA-binding protein
PPM_0004 recF; DNA replication and repair protein recF
PPM_3398 recO; DNA repair protein recO Recombination protein O
PPM_0140 recR; recombination protein recR
PPM_1962 recA; protein recA Recombinase A
PPM_1584 polA; DNA polymerase I
PPM_3865 ruvA; Holliday junction ATP-dependent DNA helicase ruvA
PPM_3864 ruvB; Holliday junction ATP-dependent DNA helicase ruvB
PPM_2660 ruvC1; crossover junction endodeoxyribonuclease ruvC
PPM_3866 ruvC3; crossover junction endodeoxyribonuclease RuvC
PPM_3119 recG; ATP-dependent DNA helicase RecG
PPM_1559 dnaE; DNA polymerase III, alpha subunit
PPM_1927 polC3; DNA polymerase III alpha subunit
PPM_0002 dnaN1; DNA polymerase III, beta subunit
PPM_2789 dnaN3; DNA polymerase III, beta subunit
PPM_p0204 pcnA; DNA polymerase III subunit beta
PPM_0138 dnaX; DNA polymerase III, gamma and tau subunit
PPM_3444 yqeN; putative DNA polymerase III, delta subunit
PPM_0016 holB; DNA polymerase III, delta prime subunit
PPM_1719 polC1; hypothetical protein
PPM_3132 priA; primosomal protein N' ATP-dependent helicase priA; Replication factor Y
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:ppo03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:ppo03000]
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03021 Transcription machinery [BR:ppo03021]
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03019 Messenger RNA biogenesis [BR:ppo03019]
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03041 Spliceosome
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03011 Ribosome [BR:ppo03011]
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03009 Ribosome biogenesis [BR:ppo03009]
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03016 Transfer RNA biogenesis [BR:ppo03016]
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03012 Translation factors [BR:ppo03012]
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03110 Chaperones and folding catalysts [BR:ppo03110]
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04131 Membrane trafficking [BR:ppo04131]
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04121 Ubiquitin system [BR:ppo04121]
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03051 Proteasome [BR:ppo03051]
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03032 DNA replication proteins [BR:ppo03032]
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03036 Chromosome and associated proteins [BR:ppo03036]
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03400 DNA repair and recombination proteins [BR:ppo03400]
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PPM_3644 ogt3; methylated-DNA-protein-cysteineS-methyltransferase
PPM_3209 ung; uracil-DNA glycosylase
PPM_0718 mutY; A/G-specific adenine glycosylase
PPM_2856 nth; endonuclease III
PPM_3149 xpB; tFIIH basal transcription factor complex helicase XPB subunit DNA excision repair protein ERCC-3
PPM_4768 uvrB3; DEAD_2 domain protein
PPM_1291 mutT1; mutT/NUDIX family protein
PPM_3326 mutT5; 7,8-dihydro-8-oxoguanine triphosphatase
PPM_1756 M1_2020; RNA pyrophosphohydrolase
PPM_2504 M1_2821; adP-ribose pyrophosphatase
PPM_1973 rppH1; putative DNA hydrolase
PPM_2775 mutT3; RNA pyrophosphohydrolase (Di)nucleoside polyphosphate hydrolase
PPM_1941 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
PPM_3645 adaA1; Methylphosphotriester-DNA alkyltransferase
PPM_4154 adaA3; Ada regulatory protein/6-O-methylguanine-DNA methyltransferase
PPM_4153 adaB; methylated-DNA-protein-cysteineS-methyltransferase
PPM_0992 ygjF; G/U mismatch-specific DNA glycosylase
PPM_5010 M1_5464; DNA polymerase bacteriophage-type
PPM_4151 alkA; putative DNA-3-methyladenine glycosidase
PPM_1585 mutM1; formamidopyrimidine-DNA glycosylase
PPM_2686 mutM3; formamidopyrimidine-DNA glycosylase
PPM_3913 exoA; exodeoxyribonuclease III
PPM_1238 nfo1; endonuclease IV
PPM_2685 nfo3; endonuclease IV
PPM_3724 dna5; deoxyribonuclease V
PPM_3852 recJ; single-stranded-DNA-specific exonuclease RecJ
PPM_4489 ligA3; NAD-dependent DNA ligase LigA
PPM_1584 polA; DNA polymerase I
PPM_4517 uvrA; UvrABC system protein A UvrA protein
PPM_4518 uvrB1; UvrABC system protein B Protein uvrB
PPM_4078 uvrC1; UvrABC system protein C Protein uvrC
PPM_0562 yjcD; ATP-dependent DNA helicase, UvrD/REP family
PPM_1786 yvgS; helicase, UvrD/Rep family
PPM_3839 uvrD; UvrD/Rep helicase family protein
PPM_4490 pcrA3; DNA helicase II / ATP-dependent DNA helicase PcrA
PPM_4462 rpoB3; DNA-directed RNA polymerase subunit beta
PPM_4461 rpoC; DNA-directed RNA polymerase subunit beta'
PPM_4426 rpoA; DNA-directed RNA polymerase subunit alpha
PPM_0128 rpoE1; replicase polyprotein 1ab
PPM_3134 yloH; DNA-directed RNA polymerase subunit omega
PPM_0038 mfd; transcription-repair-coupling factor TRCF; ATP-dependent helicase mfd
PPM_2813 mutS3; DNA mismatch repair protein mutS
PPM_1357 mutS2; DNA mismatch repair protein mutS
PPM_2538 mutS1; DNA mismatch repair protein mutS
PPM_2812 mutL; DNA mismatch repair protein mutL
PPM_3030 xseA; exodeoxyribonuclease VII, large subunit
PPM_3029 xseB; exodeoxyribonuclease 7 small subunit
PPM_1559 dnaE; DNA polymerase III, alpha subunit
PPM_1927 polC3; DNA polymerase III alpha subunit
PPM_0002 dnaN1; DNA polymerase III, beta subunit
PPM_2789 dnaN3; DNA polymerase III, beta subunit
PPM_p0204 pcnA; DNA polymerase III subunit beta
PPM_3444 yqeN; putative DNA polymerase III, delta subunit
PPM_0016 holB; DNA polymerase III, delta prime subunit
PPM_1719 polC1; hypothetical protein
PPM_0138 dnaX; DNA polymerase III, gamma and tau subunit
PPM_5054 ssb; Single-stranded DNA-binding protein SSB
PPM_p0185 ssb1; single-stranded DNA-binding protein
PPM_p0011 dam; DNA adenine methylase
PPM_3547 M1_3919; hypothetical protein
PPM_1962 recA; protein recA Recombinase A
PPM_3865 ruvA; Holliday junction ATP-dependent DNA helicase ruvA
PPM_3864 ruvB; Holliday junction ATP-dependent DNA helicase ruvB
PPM_2660 ruvC1; crossover junction endodeoxyribonuclease ruvC
PPM_3866 ruvC3; crossover junction endodeoxyribonuclease RuvC
PPM_3132 priA; primosomal protein N' ATP-dependent helicase priA; Replication factor Y
PPM_3415 sbcC; Nuclease sbcCD subunit C
PPM_3416 sbcD; Nuclease sbcCD subunit D
PPM_4483 radA; radA-like DNA repair protein
PPM_0004 recF; DNA replication and repair protein recF
PPM_3119 recG; ATP-dependent DNA helicase RecG
PPM_3398 recO; DNA repair protein recO Recombination protein O
PPM_0140 recR; recombination protein recR
PPM_3023 recN; DNA repair protein recN Recombination protein N
PPM_3417 addA; ATP-dependent nuclease subunit A
PPM_3418 addB; ATP-dependent nuclease subunit B
PPM_1140 ykoV; hypothetical protein
PPM_0359 lig; hypothetical protein
PPM_1132 ykoU; hypothetical protein
PPM_0008 gyrA1; DNA gyrase subunit A
PPM_0006 gyrB1; DNA gyrase subunit B
PPM_1876 topA; DNA topoisomerase I
PPM_0043 hupA; DNA-binding protein HU (DNA-binding protein II)
PPM_2945 hup; integration host factor subunit alpha IHF-alpha
PPM_3312 recT3; Protein recT P33
PPM_2664 recT1; protein recT P33
PPM_1282 recQ; ATP-dependent DNA helicase-like protein
PPM_1722 yqjH; DNA-damage-inducible protein P, putative
PPM_p0291 pol5; DNA polymerase V
PPM_2695 lexA; LexA repressor
PPM_1963 recX; regulatory protein recX
PPM_2112 dinG1; hypothetical protein
PPM_2899 dinG3; dinG-like putative ATP-dependent helicase
PPM_0477 nrdA; ribonucleoside-diphosphate reductase alpha chain
PPM_1773 nrdE; ribonucleoside-diphosphate reductase alpha chain
PPM_0476 nrdB; ribonucleoside-diphosphate reductase beta chain
PPM_1772 nrdF; ribonucleoside-diphosphate reductase, beta subunit
PPM_1934 mipP; putative manganese-dependent inorganic pyrophosphatase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K07455 recT; recombination protein RecT
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:ppo03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Paenibacillus polymyxa M1