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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:ptu03030]
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03410 Base excision repair [PATH:ptu03410]
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03420 Nucleotide excision repair [PATH:ptu03420]
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03430 Mismatch repair [PATH:ptu03430]
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03440 Homologous recombination [PATH:ptu03440]
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 PTUN_a1089 recJ; single-stranded-DNA-specific exonuclease
PTUN_a0402 ssb; single-strand DNA-binding protein
PTUN_a0003 recF; DNA replication and repair protein RecF
PTUN_a3239 recO; DNA repair protein RecO (recombination protein O)
PTUN_a2867 recR; recombination protein RecR
PTUN_a3369 recA; recombination protein RecA
PTUN_a0392 polA; DNA polymerase I
PTUN_a2763 ruvA; holliday junction DNA helicase RuvA
PTUN_a2761 ruvB; holliday junction DNA helicase RuvB
PTUN_a2764 ruvC; crossover junction endodeoxyribonuclease RuvC
PTUN_a3864 recG; ATP-dependent DNA helicase RecG
PTUN_a1792 recB; exodeoxyribonuclease V beta subunit
PTUN_a1791 recC; exodeoxyribonuclease V gamma subunit
PTUN_a1793 recD; exodeoxyribonuclease V alpha subunit
PTUN_a2966 dnaE; DNA polymerase III subunit alpha
PTUN_a0002 dnaN; DNA polymerase III subunit beta
PTUN_a2869 dnaX; DNA polymerase III subunit gamma/tau
PTUN_a1467 holA; DNA polymerase III subunit delta
PTUN_a2495 holB; DNA polymerase III subunit delta'
PTUN_a2786 dnaQ; DNA polymerase III subunit epsilon
PTUN_a0875 dnaQ; DNA polymerase III subunit epsilon
PTUN_a0922 holC; DNA polymerase III subunit chi
PTUN_a0607 priA; primosomal protein N' (replication factor Y) (superfamily II helicase)
PTUN_a0703 priB; primosomal replication protein N
PTUN_a2895 priC; primosomal replication protein N''
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:ptu03000]
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03021 Transcription machinery [BR:ptu03021]
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03019 Messenger RNA biogenesis [BR:ptu03019]
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03041 Spliceosome
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03011 Ribosome [BR:ptu03011]
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03009 Ribosome biogenesis [BR:ptu03009]
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03016 Transfer RNA biogenesis [BR:ptu03016]
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03012 Translation factors [BR:ptu03012]
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03110 Chaperones and folding catalysts [BR:ptu03110]
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04131 Membrane trafficking [BR:ptu04131]
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04121 Ubiquitin system
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03051 Proteasome [BR:ptu03051]
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03032 DNA replication proteins [BR:ptu03032]
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03036 Chromosome and associated proteins [BR:ptu03036]
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03400 DNA repair and recombination proteins [BR:ptu03400]
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PTUN_b0589 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase
PTUN_a1203 phrB; deoxyribodipyrimidine photo-lyase
PTUN_b0793 phrB; deoxyribodipyrimidine photo-lyase
PTUN_a3263 uracil-DNA glycosylase
PTUN_a1119 mutY; A/G-specific adenine glycosylase
PTUN_a1578 endonuclease III
PTUN_b0575 hypothetical protein
PTUN_a0583 mutT; 8-oxo-dGTP diphosphatase
PTUN_b0367 mutT; 8-oxo-dGTP diphosphatase
PTUN_a2901 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase
PTUN_a2486 deoxyribodipyrimidine photolyase-related protein
PTUN_b0590 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II
PTUN_a0218 tag; DNA-3-methyladenine glycosylase I
PTUN_a2640 mutM; formamidopyrimidine-DNA glycosylase
PTUN_a1790 xthA; exodeoxyribonuclease III
PTUN_a1089 recJ; single-stranded-DNA-specific exonuclease
PTUN_a1542 ligA; DNA ligase (NAD+)
PTUN_a0392 polA; DNA polymerase I
PTUN_a0400 uvrA; excinuclease ABC subunit A
PTUN_a1591 uvrB; excinuclease ABC subunit B
PTUN_a2725 uvrC; excinuclease ABC subunit C
PTUN_a0074 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA
PTUN_a3931 rpoB; DNA-directed RNA polymerase subunit beta
PTUN_a3930 rpoC; DNA-directed RNA polymerase subunit beta'
PTUN_a0313 rpoA; DNA-directed RNA polymerase subunit alpha
PTUN_a3855 rpoZ; DNA-directed RNA polymerase subunit omega
PTUN_a1887 mfd; transcription-repair coupling factor (superfamily II helicase)
PTUN_a3371 mutS; DNA mismatch repair protein MutS
PTUN_a0691 mutL; DNA mismatch repair protein MutL
PTUN_a3205 mutH; DNA mismatch repair protein MutH
PTUN_a1738 sbcB; exodeoxyribonuclease I
PTUN_a3365 xseA; exodeoxyribonuclease VII large subunit
PTUN_a1035 xseB; exodeoxyribonuclease VII small subunit
PTUN_a2966 dnaE; DNA polymerase III subunit alpha
PTUN_a0002 dnaN; DNA polymerase III subunit beta
PTUN_a0922 holC; DNA polymerase III subunit chi
PTUN_a1467 holA; DNA polymerase III subunit delta
PTUN_a2495 holB; DNA polymerase III subunit delta'
PTUN_a2786 dnaQ; DNA polymerase III subunit epsilon
PTUN_a0875 dnaQ; DNA polymerase III subunit epsilon
PTUN_a2869 dnaX; DNA polymerase III subunit gamma/tau
PTUN_a0402 ssb; single-strand DNA-binding protein
PTUN_a3741 dam; DNA adenine methylase
PTUN_a1792 recB; exodeoxyribonuclease V beta subunit
PTUN_a1791 recC; exodeoxyribonuclease V gamma subunit
PTUN_a1793 recD; exodeoxyribonuclease V alpha subunit
PTUN_a3369 recA; recombination protein RecA
PTUN_a2763 ruvA; holliday junction DNA helicase RuvA
PTUN_a2761 ruvB; holliday junction DNA helicase RuvB
PTUN_a2764 ruvC; crossover junction endodeoxyribonuclease RuvC
PTUN_a0607 priA; primosomal protein N' (replication factor Y) (superfamily II helicase)
PTUN_a0703 priB; primosomal replication protein N
PTUN_a2895 priC; primosomal replication protein N''
PTUN_b0477 sbcC; exonuclease SbcC
PTUN_a2706 hypothetical protein
PTUN_a3530 hypothetical protein
PTUN_b0475 sbcD; exonuclease SbcD
PTUN_a3346 sms; DNA repair protein RadA / Sms
PTUN_a0003 recF; DNA replication and repair protein RecF
PTUN_a3864 recG; ATP-dependent DNA helicase RecG
PTUN_a3239 recO; DNA repair protein RecO (recombination protein O)
PTUN_a2867 recR; recombination protein RecR
PTUN_a2846 recN; DNA repair protein RecN (Recombination protein N)
PTUN_a3271 rdgC; recombination associated protein RdgC
PTUN_a1262 cas1; CRISP-associated protein Cas1
PTUN_a2812 ATP-dependent helicase IRC3
PTUN_a2127 gyrA; DNA gyrase subunit A
PTUN_a0004 gyrB; DNA gyrase subunit B
PTUN_a1710 topA; DNA topoisomerase I
PTUN_a1329 hupB; DNA-binding protein HU-beta
PTUN_b0812 hupB; DNA-binding protein HU-beta
PTUN_a3492 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
PTUN_a2716 ihfA; integration host factor subunit alpha
PTUN_a2121 ihfB; integration host factor subunit beta
PTUN_a3873 recQ; ATP-dependent DNA helicase RecQ
PTUN_a1431 recQ; ATP-dependent DNA helicase RecQ
PTUN_a2818 hypothetical protein
PTUN_a3280 dinB; DNA polymerase IV
PTUN_a1672 umuC; DNA polymerase V
PTUN_a1673 umuD; DNA polymerase V
PTUN_a3849 lexA; repressor LexA
PTUN_a2891 polB; DNA polymerase II
PTUN_a1059 recX; regulatory protein
PTUN_a0383 rep; ATP-dependent DNA helicase Rep
PTUN_a1942 helD; DNA helicase IV
PTUN_a2893 dinG; ATP-dependent DNA helicase DinG
PTUN_b0838 dinG; ATP-dependent DNA helicase DinG
PTUN_a2131 nrdA; ribonucleoside-diphosphate reductase alpha chain
PTUN_a2133 nrdB; ribonucleoside-diphosphate reductase beta chain
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K05986 NUCS; nuclease S1 [EC:3.1.30.1]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03546 sbcC; DNA repair protein SbcC/Rad50
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:ptu03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Pseudoalteromonas tunicata