Messenger RNA Biogenesis - Rattus norvegicus (rat)

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     KO
 Eukaryotic type
   mRNA processing factors
   mRNA surveillance and transport factors
     Transport factors
       EJC complex
       TREX complex
       TREX-2 complex
       Nuclear pore complex
       Ran-mediated transport factors
       eIF4F and regulatory proteins
         117045 Eif4e; eukaryotic translation initiation factor 4E
         363275 Eif4e2; eukaryotic translation initiation factor 4E type 2
         686104 Eif4e1b; eukaryotic translation initiation factor 4E type 1B
         303831 Eif4a2; eukaryotic initiation factor 4A-II
         287436 Eif4a1; eukaryotic initiation factor 4A-I
         287986 Eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X1
         298573 Eif4g3; eukaryotic translation initiation factor 4 gamma 3
         361628 Eif4g2; eukaryotic translation initiation factor 4 gamma 2
         300253 Eif4b; eukaryotic translation initiation factor 4B
         288599 Eif4h; eukaryotic translation initiation factor 4H
         116636 Eif4ebp1; eukaryotic translation initiation factor 4E-binding protein 1
         361845 Eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2
         100365872 Eif4ebp3; eukaryotic translation initiation factor 4E-binding protein 3
         305468 Eif4enif1; eukaryotic translation initiation factor 4E transporter
         305035 Angel2; protein angel homolog 2
         362765 Angel1; protein angel homolog 1
         24948 Fmr1; synaptic functional regulator FMR1
         287433 Fxr2; fragile X mental retardation syndrome-related protein 2
         361927 Fxr1; fragile X mental retardation syndrome-related protein 1
         303073 Cyfip2; cytoplasmic FMR1 interacting protein 2
         308666 Cyfip1; cytoplasmic FMR1-interacting protein 1
         691231 Gemin5; gem-associated protein 5
         360962 Tacc3; transforming acidic coiled-coil-containing protein 3
         293056 Cpeb1; cytoplasmic polyadenylation element-binding protein 1
         303010 Cpeb4; cytoplasmic polyadenylation element-binding protein 4
         309510 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X2
         360949 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1
         364073 Ddx3y; uncharacterized protein LOC364073
         317335 Ddx3x; ATP-dependent RNA helicase DDX3X
         100362458 Gigyf2; GRB10-interacting GYF protein 2 isoform X1
         304378 Gigyf1; PERQ amino acid-rich with GYF domain-containing protein 1
         171350 Pabpc1; polyadenylate-binding protein 1
         688518 Pabpc5; polyadenylate-binding protein 5
         298510 Pabpc4; polyadenylate-binding protein 4
         296351 Pabpc1l; polyadenylate-binding protein 1-like
         302405 Pabpc1l2a; polyadenylate-binding protein 1-like 2
         292295 Pabpc6; poly(A) binding protein, cytoplasmic 6
         295010 Pabpc4l; polyadenylate-binding protein 4-like
         291615 Pabpc2; poly(A) binding protein, cytoplasmic 2
         365684 Paip1; polyadenylate-binding protein-interacting protein 1
         294260 Skiv2l; helicase SKI2W
         83632 Deaf1; deformed epidermal autoregulatory factor 1 homolog
         302500 Mcts1; malignant T-cell-amplified sequence 1
         689500 Mcts2; malignant T-cell-amplified sequence 2
         687565 Denr; density-regulated protein
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K03257 EIF4A; translation initiation factor 4A 
K03257 EIF4A; translation initiation factor 4A 
K03260 EIF4G; translation initiation factor 4G 
K03260 EIF4G; translation initiation factor 4G 
K03260 EIF4G; translation initiation factor 4G 
K03258 EIF4B; translation initiation factor 4B 
K24086 EIF4H; translation initiation factor 4H 
K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1 
K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2 
K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3 
K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter 
K18729 ANGEL; protein angel 
K18729 ANGEL; protein angel 
K15516 FMR; fragile X mental retardation protein 
K15516 FMR; fragile X mental retardation protein 
K15516 FMR; fragile X mental retardation protein 
K05749 CYFIP; cytoplasmic FMR1 interacting protein 
K05749 CYFIP; cytoplasmic FMR1 interacting protein 
K13133 GEMIN5; gem associated protein 5 
K14283 TACC3; transforming acidic coiled-coil-containing protein 3 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:3.6.4.13] 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:3.6.4.13] 
K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 
K12599 SKI2; antiviral helicase SKI2 [EC:3.6.4.-] 
K23041 DEAF1; deformed epidermal autoregulatory factor 1 
K07575 MCTS; malignant T-cell-amplified sequence 
K07575 MCTS; malignant T-cell-amplified sequence 
K24272 DENR; density-regulated protein 
       Other transport factors
     Surveillance factors
     Factors involved in mRNA localization
       Cargo complex
       Factors that have mRNA localization signals
       Trans-acting binding proteins
       Other mRNA localization factors
         24948 Fmr1; synaptic functional regulator FMR1
         287433 Fxr2; fragile X mental retardation syndrome-related protein 2
         361927 Fxr1; fragile X mental retardation syndrome-related protein 1
         303073 Cyfip2; cytoplasmic FMR1 interacting protein 2
         308666 Cyfip1; cytoplasmic FMR1-interacting protein 1
         363005 Pcbp2; poly(rC)-binding protein 2
         294336 Pcbp3; poly(rC)-binding protein 3
         363133 Pcbp4; poly(rC)-binding protein 4
         362173 Caprin1; caprin-1
         686779 Caprin2; caprin-2 isoform X1
         500538 Ybx1; Y-box-binding protein 1
K15516 FMR; fragile X mental retardation protein 
K15516 FMR; fragile X mental retardation protein 
K15516 FMR; fragile X mental retardation protein 
K05749 CYFIP; cytoplasmic FMR1 interacting protein 
K05749 CYFIP; cytoplasmic FMR1 interacting protein 
K13162 PCBP2; poly(rC)-binding protein 2 
K21444 PCBP3_4; poly(rC)-binding protein 3/4 
K21444 PCBP3_4; poly(rC)-binding protein 3/4 
K18743 CAPRIN1; caprin-1 
K18744 CAPRIN2; caprin-2 
K09276 YBX1; Y-box-binding protein 1 
     mRNA cycle factors
       Common to processing body (P body) and stress granule
       P-body specific factors
       Stress granule specific factors
         361655 Tial1; nucleolysin TIAR
         312510 Tia1; nucleolysin TIA-1
         171350 Pabpc1; polyadenylate-binding protein 1
         688518 Pabpc5; polyadenylate-binding protein 5
         298510 Pabpc4; polyadenylate-binding protein 4
         296351 Pabpc1l; polyadenylate-binding protein 1-like
         302405 Pabpc1l2a; polyadenylate-binding protein 1-like 2
         292295 Pabpc6; poly(A) binding protein, cytoplasmic 6
         295010 Pabpc4l; polyadenylate-binding protein 4-like
         291615 Pabpc2; poly(A) binding protein, cytoplasmic 2
         171500 Stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform LL (A)
         84496 Stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform 2
         24948 Fmr1; synaptic functional regulator FMR1
         287433 Fxr2; fragile X mental retardation syndrome-related protein 2
         361927 Fxr1; fragile X mental retardation syndrome-related protein 1
         171091 Zbp1; Z-DNA-binding protein 1
         363854 Elavl1; ELAV-like protein 1
         171092 G3bp1; ras GTPase-activating protein-binding protein 1
         502531 Eif2a; eukaryotic translation initiation factor 2A
         288516 Eif3b; eukaryotic translation initiation factor 3 subunit B
         303831 Eif4a2; eukaryotic initiation factor 4A-II
         287436 Eif4a1; eukaryotic initiation factor 4A-I
         688288 Eif4a3; eukaryotic initiation factor 4A-III
         300253 Eif4b; eukaryotic translation initiation factor 4B
         287986 Eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X1
         298573 Eif4g3; eukaryotic translation initiation factor 4 gamma 3
         361628 Eif4g2; eukaryotic translation initiation factor 4 gamma 2
         81771 Rps6ka1; ribosomal protein S6 kinase alpha-1
         117269 Rps6ka2; ribosomal protein S6 kinase alpha-2
         501560 Rps6ka3; ribosomal protein S6 kinase alpha-3
         317203 Rps6ka6; ribosomal protein S6 kinase alpha-6
         83427 Rack1; receptor of activated protein C kinase 1
         311786 Traf2; TNF receptor-associated factor 2
         59087 Nxf1; nuclear RNA export factor 1
         501621 Nxf7; nuclear RNA export factor 7
         308653 Nxf2; nuclear RNA export factor 2 isoform X1
         680025 Nxf5; nuclear RNA export factor 2-like
         302591 Nxf3; nuclear RNA export factor 3
         108348065 histone deacetylase 6
         306066 Tdrd3; tudor domain-containing protein 3
         307070 Larp4b; la-related protein 4B
         100910299 Larp4; la-related protein 4 isoform X1
K13201 TIA1; nucleolysin TIA-1/TIAR 
K13201 TIA1; nucleolysin TIA-1/TIAR 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K17597 STAU; double-stranded RNA-binding protein Staufen 
K17597 STAU; double-stranded RNA-binding protein Staufen 
K15516 FMR; fragile X mental retardation protein 
K15516 FMR; fragile X mental retardation protein 
K15516 FMR; fragile X mental retardation protein 
K12965 ZBP1; Z-DNA binding protein 1 
K13088 ELAVL1; ELAV-like protein 1 
K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:3.6.4.12 3.6.4.13] 
K15026 EIF2A; translation initiation factor 2A 
K03253 EIF3B; translation initiation factor 3 subunit B 
K03257 EIF4A; translation initiation factor 4A 
K03257 EIF4A; translation initiation factor 4A 
K13025 EIF4A3; ATP-dependent RNA helicase [EC:3.6.4.13] 
K03258 EIF4B; translation initiation factor 4B 
K03260 EIF4G; translation initiation factor 4G 
K03260 EIF4G; translation initiation factor 4G 
K03260 EIF4G; translation initiation factor 4G 
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
K14284 NXF; nuclear RNA export factor 
K14284 NXF; nuclear RNA export factor 
K14284 NXF; nuclear RNA export factor 
K14284 NXF; nuclear RNA export factor 
K14284 NXF; nuclear RNA export factor 
K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
K18404 TDRD3; tudor domain-containing protein 3 
K18763 LARP4; la-related protein 4 
K18763 LARP4; la-related protein 4 
   mRNA degradation factors
 
 Prokaryotic type

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Last updated: September 2, 2020