Messenger RNA Biogenesis - Rattus norvegicus (rat)

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     KO
 Eukaryotic type
   mRNA processing factors
   mRNA surveillance and transport factors
     Transport factors
     Surveillance factors
     Factors involved in mRNA localization
     mRNA cycle factors
       Common to processing body (P body) and stress granule
       P-body specific factors
         291604 Dcp2; mRNA-decapping enzyme 2
         361109 Dcp1a; mRNA-decapping enzyme 1A
         500305 Dcp1b; mRNA-decapping enzyme 1B isoform X2
         364624 Lsm1; U6 snRNA-associated Sm-like protein LSm1
         684148 Lsm2; U6 snRNA-associated Sm-like protein LSm2 isoform 1
         297455 Lsm3; U6 snRNA-associated Sm-like protein LSm3
         290647 Lsm4; U6 snRNA-associated Sm-like protein LSm4
         306222 Lsm5; U6 snRNA-associated Sm-like protein LSm5
         498934 Lsm6; U6 snRNA-associated Sm-like protein LSm6
         100360750 U6 snRNA-associated Sm-like protein LSm6
         362829 Lsm7; U6 snRNA-associated Sm-like protein LSm7
         296913 Lsm8; LSM8 homolog, U6 small nuclear RNA associated
         171041 Klc1; kinesin light chain 1 isoform C
         171549 Klc3; kinesin light chain 3
         316226 Klc4; kinesin light chain 4
         309159 Klc2; kinesin light chain 2
         25017 Myo5a; unconventional myosin-Va
         25132 Myo5b; unconventional myosin-Vb
         315820 Myo5c; myosin-Vc
         64158 Tuba1a; tubulin alpha-1A chain
         291287 Tubal3; tubulin alpha chain-like 3
         300218 Tuba1c; tubulin alpha-1C chain
         316531 Tuba4a; tubulin alpha-4A chain
         500319 Tuba3a; tubulin alpha-3 chain
         500363 Tuba3b; tubulin alpha-3 chain
         500377 Tuba8; tubulin alpha-8 chain
         500929 Tuba1b; tubulin alpha-1B chain
         293056 Cpeb1; cytoplasmic polyadenylation element-binding protein 1
         303010 Cpeb4; cytoplasmic polyadenylation element-binding protein 4
         309510 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X2
         360949 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1
         691231 Gemin5; gem-associated protein 5
         360962 Tacc3; transforming acidic coiled-coil-containing protein 3
         308971 Tnrc6a; trinucleotide repeat-containing gene 6A protein
         192178 Tnrc6b; trinucleotide repeat-containing gene 6B protein
         303774 Tnrc6c; trinucleotide repeat-containing gene 6C protein isoform X2
         291841 Cnot1; CCR4-NOT transcription complex subunit 1
         299805 Cnot2; CCR4-NOT transcription complex subunit 2
         308311 Cnot3; CCR4-NOT transcription complex subunit 3
         312227 Cnot4; CCR4-NOT transcription complex subunit 4
         287249 Cnot6; CCR4-NOT transcription complex subunit 6
         360917 Cnot6l; CCR4-NOT transcription complex subunit 6-like
         306492 Cnot7; CCR4-NOT transcription complex subunit 7
         363603 Cnot8; CCR4-NOT transcription complex subunit 8
         367307 Dis3l2; DIS3-like exonuclease 2 isoform 1
         408200 Pan2; PAN2-PAN3 deadenylation complex catalytic subunit Pan2
         360760 Pan3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
         170842 Tob1; protein Tob1
         29618 Btg1; protein BTG1
         29619 Btg2; protein BTG2
         315159 Tob2; protein Tob2
         315650 Btg4; protein BTG4
         367975 uncharacterized protein LOC367975
         54230 Btg3; protein BTG3
         305468 Eif4enif1; eukaryotic translation initiation factor 4E transporter
         361736 Patl1; protein PAT1 homolog 1
         315708 Edc3; enhancer of mRNA-decapping protein 3
         361399 Edc4; enhancer of mRNA-decapping protein 4
         365213 Nanos2; nanos homolog 2
         288909 Nanos3; nanos homolog 3
         361271 Upf2; regulator of nonsense transcripts 2
         313449 Upf3b; regulator of nonsense transcripts 3B
         361176 Upf3a; regulator of nonsense transcripts 3A
         308901 Trim21; E3 ubiquitin-protein ligase TRIM21
         301042 Trim71; E3 ubiquitin-protein ligase TRIM71
         117017 Polr2g; DNA-directed RNA polymerase II subunit RPB7
         54287 Eif2ak2; interferon-induced, double-stranded RNA-activated protein kinase
         353228 Zar1; zygote arrest protein 1
         689594 Zar1l; ZAR1-like protein
         296467 Ythdf1; YTH domain-containing family protein 1
         313053 Ythdf2; YTH domain-containing family protein 2
         361920 Ythdf3; YTH domain-containing family protein 3
K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-] 
K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
K10407 KLC; kinesin light chain 
K10407 KLC; kinesin light chain 
K10407 KLC; kinesin light chain 
K10407 KLC; kinesin light chain 
K10357 MYO5; myosin V 
K10357 MYO5; myosin V 
K10357 MYO5; myosin V 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K13133 GEMIN5; gem associated protein 5 
K14283 TACC3; transforming acidic coiled-coil-containing protein 3 
K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] 
K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
K14443 TOB; protein Tob/BTG 
K14443 TOB; protein Tob/BTG 
K14443 TOB; protein Tob/BTG 
K14443 TOB; protein Tob/BTG 
K14443 TOB; protein Tob/BTG 
K14443 TOB; protein Tob/BTG 
K14443 TOB; protein Tob/BTG 
K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter 
K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
K12615 EDC3; enhancer of mRNA-decapping protein 3 
K12616 EDC4; enhancer of mRNA-decapping protein 4 
K18760 NANOS2; protein nanos 2 
K18761 NANOS3; protein nanos 3 
K14327 UPF2; regulator of nonsense transcripts 2 
K14328 UPF3; regulator of nonsense transcripts 3 
K14328 UPF3; regulator of nonsense transcripts 3 
K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27] 
K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1] 
K18762 ZAR1; zygote arrest protein 1 
K18762 ZAR1; zygote arrest protein 1 
K20102 YTHDF; YTH domain-containing family protein 
K20102 YTHDF; YTH domain-containing family protein 
K20102 YTHDF; YTH domain-containing family protein 
       Stress granule specific factors
   mRNA degradation factors
 
 Prokaryotic type

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Last updated: September 2, 2020