Messenger RNA Biogenesis - Saccharomyces cerevisiae (budding yeast)

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     KO
 Eukaryotic type
   mRNA processing factors
   mRNA surveillance and transport factors
     Transport factors
     Surveillance factors
     Factors involved in mRNA localization
     mRNA cycle factors
       Common to processing body (P body) and stress granule
         YGL173C XRN1; chromatin-binding exonuclease XRN1
         YOL139C CDC33; translation initiation factor eIF4E
         YMR080C NAM7; ATP-dependent RNA helicase NAM7
         YPL119C DBP1; putative DEAD-box ATP-dependent RNA helicase DBP1
         YOR204W DED1; DEAD-box ATP-dependent RNA helicase DED1
         YDL160C DHH1; DExD/H-box ATP-dependent RNA helicase DHH1
         YPR129W SCD6; Scd6p
         YBR017C KAP104; Kap104p
         YJL164C TPK1; cAMP-dependent protein kinase catalytic subunit TPK1
         YPL203W TPK2; cAMP-dependent protein kinase catalytic subunit TPK2
         YKL166C TPK3; cAMP-dependent protein kinase catalytic subunit TPK3
         YCL037C SRO9; Sro9p
         YDR515W SLF1; Slf1p
K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
K03259 EIF4E; translation initiation factor 4E 
K14326 UPF1; regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3] 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13] 
K18749 LSM14; protein LSM14 
K18752 TNPO1; transportin-1 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K18757 LARP1; la-related protein 1 
K18757 LARP1; la-related protein 1 
       P-body specific factors
       Stress granule specific factors
   mRNA degradation factors
 
 Prokaryotic type

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Last updated: April 9, 2024