Messenger RNA Biogenesis - Saccharomyces cerevisiae (budding yeast)

[ Brite menu | Download htext | Download json | Help ]

1st Level  2nd Level  3rd Level  4th Level  5th Level 

 Eukaryotic type
   mRNA processing factors
   mRNA surveillance and transport factors
     Transport factors
     Surveillance factors
     Factors involved in mRNA localization
     mRNA cycle factors
       Common to processing body (P body) and stress granule
       P-body specific factors
         YNL118C DCP2; decapping enzyme complex catalytic subunit
         YOL149W DCP1; Dcp1p
         YJL124C LSM1; Lsm1p
         YBL026W LSM2; Sm-like protein LSM2
         YLR438C-A LSM3; U4/U6-U5 snRNP complex subunit LSM3
         YER112W LSM4; U6 snRNA complex subunit LSM4
         YER146W LSM5; RNA-binding protein LSM5
         YDR378C LSM6; U4/U6-U5 snRNP complex subunit LSM6
         YNL147W LSM7; Sm-like protein LSM7
         YJR022W LSM8; U4/U6-U5 snRNP complex subunit LSM8
         YOR326W MYO2; myosin 2
         YAL029C MYO4; myosin 4
         YML085C TUB1; alpha-tubulin TUB1
         YML124C TUB3; alpha-tubulin TUB3
         YCR093W CDC39; CCR4-NOT core subunit CDC39
         YDL165W CDC36; CCR4-NOT core subunit CDC36
         YIL038C NOT3; CCR4-NOT core subunit NOT3
         YPR072W NOT5; CCR4-NOT core subunit NOT5
         YER068W MOT2; CCR4-NOT core ubiquitin-protein ligase subunit MOT2
         YAL021C CCR4; CCR4-NOT core exoribonuclease subunit CCR4
         YNR052C POP2; CCR4-NOT core DEDD family RNase subunit POP2
         YGL094C PAN2; poly(A)-specific ribonuclease
         YKL025C PAN3; Pan3p
         YCR077C PAT1; Pat1p
         YER035W EDC2; Edc2p
         YGL222C EDC1; Edc1p
         YEL015W EDC3; Edc3p
         YHR077C NMD2; Nmd2p
         YGR072W UPF3; Upf3p
         YDR404C RPB7; DNA-directed RNA polymerase II subunit RPB7
         YDR374C PHO92; mRNA-binding phosphate metabolism regulator
K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:] 
K12612 DCP1; mRNA-decapping enzyme subunit 1 
K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
K10357 MYO5; myosin V 
K10357 MYO5; myosin V 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:] 
K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:] 
K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:] 
K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2 
K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2 
K12615 EDC3; enhancer of mRNA-decapping protein 3 
K14327 UPF2; regulator of nonsense transcripts 2 
K14328 UPF3; regulator of nonsense transcripts 3 
K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
K20102 YTHDF; YTH domain-containing family protein 
       Stress granule specific factors
   mRNA degradation factors
 Prokaryotic type

Last updated: September 2, 2020