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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:sfl03030]
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03410 Base excision repair [PATH:sfl03410]
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03420 Nucleotide excision repair [PATH:sfl03420]
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03430 Mismatch repair [PATH:sfl03430]
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03440 Homologous recombination [PATH:sfl03440]
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 SF2878 recJ; ssDNA exonuclease RecJ
SF4145 ssb; single-stranded DNA-binding protein
SF3764 recF; recombination protein F
SF2627 recO; DNA repair protein RecO
SF0417 recR; recombination protein RecR
SF2722 recA; recombinase A
SF3934 polA; DNA polymerase I
SF1871 ruvA; Holliday junction DNA helicase RuvA
SF1870 ruvB; Holliday junction DNA helicase RuvB
SF1873 ruvC; Holliday junction resolvase
SF3692 recG; ATP-dependent DNA helicase RecG
SF2831 recB; exonuclease V subunit beta
SF2833 recC; exonuclease V subunit gamma
SF2830 recD; exonuclease V subunit alpha
SF0174 dnaE; DNA polymerase III subunit alpha
SF3763 dnaN; DNA polymerase III subunit beta
SF0415 dnaX; DNA polymerase III subunits gamma and tau
SF0641 holA; DNA polymerase III subunit delta
SF1103 holB; DNA polymerase III subunit delta'
SF0200 dnaQ; DNA polymerase III subunit epsilon
SF1853 holE; DNA polymerase III subunit theta
SF4230 holC; DNA polymerase III subunit chi
SF4403 holD; DNA polymerase III subunit psi
SF4013 priA; primosome assembly protein PriA
SF4353b primosomal replication protein N
SF0412 priC; primosomal replication protein N''
SF4393 dnaT; primosomal protein DnaI
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:sfl03000]
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03021 Transcription machinery [BR:sfl03021]
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03019 Messenger RNA biogenesis [BR:sfl03019]
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03041 Spliceosome
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03011 Ribosome [BR:sfl03011]
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03009 Ribosome biogenesis [BR:sfl03009]
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03016 Transfer RNA biogenesis [BR:sfl03016]
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03012 Translation factors [BR:sfl03012]
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03110 Chaperones and folding catalysts [BR:sfl03110]
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04131 Membrane trafficking [BR:sfl04131]
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04121 Ubiquitin system [BR:sfl04121]
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03051 Proteasome [BR:sfl03051]
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03032 DNA replication proteins [BR:sfl03032]
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03036 Chromosome and associated proteins [BR:sfl03036]
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03400 DNA repair and recombination proteins [BR:sfl03400]
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SF1835 ogt; O-6-alkylguanine-DNA:cysteine-protein methyltransferase
SF0589 phrB; deoxyribodipyrimidine photolyase
SF2958 mutY; A/G-specific adenine glycosylase
SF1658 nth; endonuclease III
SF0096 mutT; nucleoside triphosphate pyrophosphohydrolase
SF3679 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
SF2297 ada; bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase
SF2296 alkB; alpha-ketoglutarate-dependent dioxygenase AlkB
SF2133 alkA; 3-methyladenine DNA glycosylase
SF3582 tag; 3-methyladenine DNA glycosylase
SF3674 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
SF0583 nei; endonuclease VIII
SF1477 xthA; exonuclease III
SF2244 nfo; endonuclease IV
SF4070 nfi; endonuclease V
SF2878 recJ; ssDNA exonuclease RecJ
SF2466 ligA; NAD-dependent DNA ligase LigA
SF3686 ligB; NAD-dependent DNA ligase LigB
SF3934 polA; DNA polymerase I
SF4146 uvrA; excinuclease ABC subunit A
SF0729 uvrB; excinuclease ABC subunit B
SF1956 uvrC; excinuclease ABC subunit C
SF1485 nucleotide excision repair endonuclease
SF3891 uvrD; DNA-dependent helicase II
SF4060 rpoB; DNA-directed RNA polymerase subunit beta
SF4061 rpoC; DNA-directed RNA polymerase subunit beta'
SF3327 rpoA; DNA-directed RNA polymerase subunit alpha
SF3689 rpoZ; DNA-directed RNA polymerase subunit omega
SF1118 mfd; transcription-repair coupling factor
SF2752 mutS; DNA mismatch repair protein MutS
SF4325 mutL; DNA mismatch repair protein
SF2841 mutH; DNA mismatch repair protein
SF2070 sbcB; exonuclease I
SF2555 xseA; exodeoxyribonuclease VII large subunit
SF0359 xseB; exodeoxyribonuclease VII small subunit
SF1855 exodeoxyribonuclease X
SF0174 dnaE; DNA polymerase III subunit alpha
SF3763 dnaN; DNA polymerase III subunit beta
SF4230 holC; DNA polymerase III subunit chi
SF0641 holA; DNA polymerase III subunit delta
SF1103 holB; DNA polymerase III subunit delta'
SF0200 dnaQ; DNA polymerase III subunit epsilon
SF0415 dnaX; DNA polymerase III subunits gamma and tau
SF4403 holD; DNA polymerase III subunit psi
SF1853 holE; DNA polymerase III subunit theta
SF4145 ssb; single-stranded DNA-binding protein
SF3405 dam; DNA adenine methylase
SF2004 vsr; DNA mismatch endonuclease
SF2831 recB; exonuclease V subunit beta
SF2833 recC; exonuclease V subunit gamma
SF2830 recD; exonuclease V subunit alpha
SF2722 recA; recombinase A
SF1871 ruvA; Holliday junction DNA helicase RuvA
SF1870 ruvB; Holliday junction DNA helicase RuvB
SF1873 ruvC; Holliday junction resolvase
SF2040 crossover junction endodeoxyribonuclease
SF1899 crossover junction endodeoxyribonuclease
SF1545 rus; endodeoxyribonuclease RUS
SF4013 priA; primosome assembly protein PriA
SF4353b primosomal replication protein N
SF0412 priC; primosomal replication protein N''
SF4393 dnaT; primosomal protein DnaI
SF0334 sbcC; exonuclease SbcC
SF0335 sbcD; exonuclease SbcD
SF4421 sms; DNA repair protein RadA
SF3764 recF; recombination protein F
SF3692 recG; ATP-dependent DNA helicase RecG
SF2627 recO; DNA repair protein RecO
SF0417 recR; recombination protein RecR
SF2675 recN; recombination and repair protein
SF0331 rdgC; recombination associated protein
SF2271 yejH; ATP-dependent helicase
SF4226 yjgR; hypothetical protein
SF2311 gyrA; DNA gyrase subunit A
SF3765 gyrB; DNA gyrase subunit B
SF1276 topA; DNA topoisomerase I subunit omega
SF4072 hupA; transcriptional regulator HU subunit alpha
SF0385 hupB; transcriptional regulator HU subunit beta
SF1375 exodeoxyribonuclease VIII
SF3299 fis; Fis family transcriptional regulator
SF1519 ihfA; integration host factor subunit alpha
SF0908 ihfB; integration host factor subunit beta
SF3900 recQ; ATP-dependent DNA helicase RecQ
SF1237 hns; global DNA-binding transcriptional dual regulator H-NS
SF0279 dinP; DNA polymerase IV
SF1173 umuC; DNA polymerase V subunit UmuC
SF1172 umuD; DNA polymerase V subunit UmuD
SF4162 lexA; LexA repressor
SF0055 polB; DNA polymerase II
SF3684 dinD; DNA-damage-inducible protein D
SF1067 dinI; DNA damage-inducible protein I
SF2721 recX; recombination regulator RecX
SF3430 yhgA; transposase
SF2381 yfcI; hypothetical protein
SF0129 yadD; hypothetical protein
SF2326 yfaD; hypothetical protein
SF3851 rep; ATP-dependent DNA helicase Rep
SF0964 helD; DNA helicase IV
SF0748 dinG; ATP-dependent DNA helicase DinG
SF1420 hypothetical protein
SF2316 nrdA; ribonucleotide-diphosphate reductase subunit alpha
SF2703 nrdE; ribonucleotide-diphosphate reductase subunit alpha
SF2317 nrdB; ribonucleoside-diphosphate reductase 1 subunit beta
SF2704 nrdF; ribonucleotide-diphosphate reductase subunit beta
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K02317 dnaT; DNA replication protein DnaT
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K19789 radD; DNA repair protein RadD
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-]
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14623 dinD; DNA-damage-inducible protein D
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K01157 rpnA; recombination-promoting nuclease RpnA [EC:3.1.21.-]
K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]
K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-]
K24090 rpnE; recombination-promoting nuclease RpnE
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:sfl03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Shigella flexneri 301 (serotype 2a)