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KO |
09100 Metabolism
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09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:soz03030]
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03410 Base excision repair [PATH:soz03410]
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03420 Nucleotide excision repair [PATH:soz03420]
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03430 Mismatch repair [PATH:soz03430]
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03440 Homologous recombination [PATH:soz03440]
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Spy49_0735 recJ; Single-stranded-DNA-specific exonuclease recJ
Spy49_1427c ssb2; Single-strand binding protein 2
Spy49_1500c Single-strand binding protein 3
Spy49_0107 ssb; Single-stranded DNA-binding protein
Spy49_1810 recF; Recombination protein F
Spy49_0017 recO; DNA repair protein recO
Spy49_1138c recR; Recombination protein recR
Spy49_1753c recA; RecA protein
Spy49_0163 polA; DNA polymerase I
Spy49_1756c ruvA; Holliday junction DNA helicase ruvA
Spy49_0033 ruvB; Holliday junction DNA helicase ruvB
Spy49_1394c recG; Putative ATP-dependent DNA helicase
Spy49_1439 recD; Exodeoxyribonuclease V alpha chain
Spy49_1019c dnaE; DNA polymerase III alpha subunit
Spy49_1618c polC; DNA polymerase III alpha subunit
Spy49_0002 dnaN; Beta subunit of DNA polymerase III
Spy49_1087c dnaX; DNA polymerase III subunits gamma and tau
Spy49_1123c holA; DNA polymerase III delta subunit
Spy49_0327 DNA polymerase III delta prime subunit
Spy49_1534c dnaQ; Putative DNA polymerase III epsilon subunit
Spy49_1262c priA; Arrested fork binding
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:soz03000]
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03021 Transcription machinery [BR:soz03021]
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03019 Messenger RNA biogenesis [BR:soz03019]
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03041 Spliceosome
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03011 Ribosome [BR:soz03011]
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03009 Ribosome biogenesis [BR:soz03009]
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03016 Transfer RNA biogenesis [BR:soz03016]
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03012 Translation factors [BR:soz03012]
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03110 Chaperones and folding catalysts [BR:soz03110]
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04131 Membrane trafficking [BR:soz04131]
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04121 Ubiquitin system
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03051 Proteasome
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03032 DNA replication proteins [BR:soz03032]
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03036 Chromosome and associated proteins [BR:soz03036]
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03400 DNA repair and recombination proteins [BR:soz03400]
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Spy49_1160c phr; Putative deoxyribodipyrimidine photolyase
Spy49_0717 ung; Uracil-DNA glycosylase
Spy49_1430 mutY; A/G-specific adenine glycosylase
Spy49_0738 nth; Endonuclease III
Spy49_1165 mutT; MutT/nudix family protein
Spy49_0793 mutX; Putative 7,8-dihydro-8-oxoguanine-triphosphatase
Spy49_1640c nudB; MutT/nudix family protein
Spy49_0199 dut; Putative deoxyuridine 5-triphosphate nucleotidohydrolase
Spy49_1755c tag; DNA-3-methyladenine glycosylase
Spy49_0416 fpg; Formamidopyrimidine-DNA glycosylase
Spy49_0334c exoA; Putative 3-exo-deoxyribonuclease
Spy49_0735 recJ; Single-stranded-DNA-specific exonuclease recJ
Spy49_0580 lig; DNA ligase
Spy49_0163 polA; DNA polymerase I
Spy49_1423c uvrA; UvrABC system protein A
Spy49_1039c uvrB; Excinuclease ABC (Subunit B), helicase subunit of the DNA excision repair complex
Spy49_0842 uvrC; Putative excinuclease ABC
Spy49_1007c pcrA; Putative ATP-dependent DNA helicase
Spy49_0087 rpoB; DNA-directed RNA polymerase beta subunit
Spy49_0088 rpoC; DNA-directed RNA polymerase beta subunit
Spy49_0074 rpoA; DNA-directed RNA polymerase alpha subunit
Spy49_1562c rpoE; DNA-directed RNA polymerase delta subunit
Spy49_1263c DNA-directed RNA polymerase omega subunit
Spy49_0006 trcF; Transcription-repair coupling factor
Spy49_1759c mutS; DNA mismatch repair protein MutS
Spy49_1434c mutS2; Putative DNA mismatch repair protein
Spy49_1758c mutL; DNA mismatch repair protein MutL
Spy49_1157c xseA; Probable exodeoxyribonuclease VII large subunit
Spy49_1156c xseB; Probable exodeoxyribonuclease VII small subunit
Spy49_1019c dnaE; DNA polymerase III alpha subunit
Spy49_1618c polC; DNA polymerase III alpha subunit
Spy49_0002 dnaN; Beta subunit of DNA polymerase III
Spy49_1123c holA; DNA polymerase III delta subunit
Spy49_0327 DNA polymerase III delta prime subunit
Spy49_1534c dnaQ; Putative DNA polymerase III epsilon subunit
Spy49_1087c dnaX; DNA polymerase III subunits gamma and tau
Spy49_1427c ssb2; Single-strand binding protein 2
Spy49_1500c Single-strand binding protein 3
Spy49_0107 ssb; Single-stranded DNA-binding protein
Spy49_1439 recD; Exodeoxyribonuclease V alpha chain
Spy49_1753c recA; RecA protein
Spy49_1756c ruvA; Holliday junction DNA helicase ruvA
Spy49_0033 ruvB; Holliday junction DNA helicase ruvB
Spy49_1262c priA; Arrested fork binding
Spy49_0200 radA; RadA-like DNA repair protein
Spy49_1810 recF; Recombination protein F
Spy49_1394c recG; Putative ATP-dependent DNA helicase
Spy49_0017 recO; DNA repair protein recO
Spy49_1138c recR; Recombination protein recR
Spy49_1152c recN; Putative DNA repair and genetic recombination protein
Spy49_1278 recU; Recombination protein U-like protein
Spy49_0604 rexA; Putative ATP-dependent exonuclease, subunit A
Spy49_0603 rexB; Putative ATP-dependent exonuclease, subunit B
Spy49_1208c hypothetical protein
Spy49_0825 Lipoyl-binding domain protein
Spy49_0418 hypothetical protein
Spy49_0905 gyrA; DNA gyrase subunit A
Spy49_0560 gyrB; DNA gyrase subunit B
Spy49_0915 topA; Putative DNA topoisomerase I
Spy49_1147c DNA-binding protein HU
Spy49_1441c dinP; DNA polymerase IV
Spy49_0944 Putative repressor protein
Spy49_1242 recX; Regulatory protein recX
Spy49_0541 dinG; DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
Spy49_0341 nrdE.2; Ribonucleotide reductase of class Ib (aerobic), alpha subunit
Spy49_1097 nrdE1; Ribonucleotide reductase of class Ib (aerobic), alpha subunit
Spy49_0339 nrdF.2; Ribonucleotide reductase of class Ib (aerobic), beta subunit
Spy49_1099 Ribonucleotide reductase of class Ib (aerobic), beta subunit
Spy49_0554c hypothetical protein
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K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:soz03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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