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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:sse03030]
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03410 Base excision repair [PATH:sse03410]
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03420 Nucleotide excision repair [PATH:sse03420]
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03430 Mismatch repair [PATH:sse03430]
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03440 Homologous recombination [PATH:sse03440]
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 Ssed_0895 single-stranded-DNA-specific exonuclease RecJ
Ssed_4025 single-strand binding protein
Ssed_0008 DNA replication and repair protein RecF
Ssed_1150 DNA repair protein RecO
Ssed_2850 recombination protein RecR
Ssed_1300 Calcium-transporting ATPase
Ssed_0096 DNA-directed DNA polymerase
Ssed_2033 Holliday junction DNA helicase RuvA
Ssed_2034 Holliday junction DNA helicase RuvB
Ssed_2032 Crossover junction endodeoxyribonuclease
Ssed_0329 ATP-dependent DNA helicase RecG
Ssed_1936 exodeoxyribonuclease V, beta subunit
Ssed_1937 exodeoxyribonuclease V, gamma subunit
Ssed_1935 Exodeoxyribonuclease V
Ssed_3146 DNA-directed DNA polymerase
Ssed_0007 DNA-directed DNA polymerase
Ssed_2852 DNA-directed DNA polymerase
Ssed_3481 DNA-directed DNA polymerase
Ssed_2647 DNA-directed DNA polymerase
Ssed_2410 DNA-directed DNA polymerase
Ssed_1752 exonuclease, RNase T and DNA polymerase III
Ssed_1993 DNA-directed DNA polymerase
Ssed_2322 exonuclease, RNase T and DNA polymerase III
Ssed_1009 DNA polymerase III chi subunit, HolC
Ssed_0534 primosomal protein N'
Ssed_0758 single-strand binding protein/primosomal replication protein N
Ssed_1564 primosomal replication protein N'', putative
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:sse03000]
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03021 Transcription machinery [BR:sse03021]
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03019 Messenger RNA biogenesis [BR:sse03019]
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03041 Spliceosome
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03011 Ribosome [BR:sse03011]
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03009 Ribosome biogenesis [BR:sse03009]
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03016 Transfer RNA biogenesis [BR:sse03016]
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03012 Translation factors [BR:sse03012]
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03110 Chaperones and folding catalysts [BR:sse03110]
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04131 Membrane trafficking [BR:sse04131]
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04121 Ubiquitin system [BR:sse04121]
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03051 Proteasome [BR:sse03051]
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03032 DNA replication proteins [BR:sse03032]
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03036 Chromosome and associated proteins [BR:sse03036]
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03400 DNA repair and recombination proteins [BR:sse03400]
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Ssed_2903 Methylated-DNA--(protein)-cysteine S-methyltransferase
Ssed_3688 uracil-DNA glycosylase
Ssed_1219 A/G-specific adenine glycosylase
Ssed_2038 DNA-(apurinic or apyrimidinic site) lyase
Ssed_0374 ERCC4 domain protein
Ssed_0419 mutator MutT protein
Ssed_2716 MutT/NUDIX family protein
Ssed_0383 dUTP diphosphatase
Ssed_2904 transcriptional regulator, AraC family
Ssed_0016 DNA-3-methyladenine glycosylase I
Ssed_0117 DNA-formamidopyrimidine glycosylase
Ssed_1668 exodeoxyribonuclease III
Ssed_1179 Deoxyribonuclease IV (phage-T(4)-induced)
Ssed_0895 single-stranded-DNA-specific exonuclease RecJ
Ssed_1738 DNA ligase (NAD(+))
Ssed_0096 DNA-directed DNA polymerase
Ssed_4027 excinuclease ABC, A subunit
Ssed_2046 excinuclease ABC, B subunit
Ssed_2454 excinuclease ABC, C subunit
Ssed_0467 DNA helicase II
Ssed_4241 UvrD/REP helicase
Ssed_4324 DNA-directed RNA polymerase, beta subunit
Ssed_4323 DNA-directed RNA polymerase, beta' subunit
Ssed_4294 DNA-directed RNA polymerase, alpha subunit
Ssed_0335 DNA-directed RNA polymerase, omega subunit
Ssed_2833 transcription-repair coupling factor
Ssed_1299 DNA mismatch repair protein MutS
Ssed_0795 DNA mismatch repair protein MutL
Ssed_1131 DNA mismatch repair endonuclease MutH
Ssed_2617 Exodeoxyribonuclease I
Ssed_3125 Exodeoxyribonuclease VII
Ssed_3327 exodeoxyribonuclease VII, small subunit
Ssed_3146 DNA-directed DNA polymerase
Ssed_0007 DNA-directed DNA polymerase
Ssed_1009 DNA polymerase III chi subunit, HolC
Ssed_3481 DNA-directed DNA polymerase
Ssed_2647 DNA-directed DNA polymerase
Ssed_2410 DNA-directed DNA polymerase
Ssed_1752 exonuclease, RNase T and DNA polymerase III
Ssed_1993 DNA-directed DNA polymerase
Ssed_2322 exonuclease, RNase T and DNA polymerase III
Ssed_2852 DNA-directed DNA polymerase
Ssed_4025 single-strand binding protein
Ssed_4262 Site-specific DNA-methyltransferase (adenine-specific)
Ssed_1936 exodeoxyribonuclease V, beta subunit
Ssed_1937 exodeoxyribonuclease V, gamma subunit
Ssed_1935 Exodeoxyribonuclease V
Ssed_1300 Calcium-transporting ATPase
Ssed_2033 Holliday junction DNA helicase RuvA
Ssed_2034 Holliday junction DNA helicase RuvB
Ssed_2032 Crossover junction endodeoxyribonuclease
Ssed_0534 primosomal protein N'
Ssed_0758 single-strand binding protein/primosomal replication protein N
Ssed_1564 primosomal replication protein N'', putative
Ssed_1589 exonuclease SbcC, putative
Ssed_1588 nuclease SbcCD, D subunit
Ssed_3370 Methylated-DNA--(protein)-cysteine S-methyltransferase
Ssed_0008 DNA replication and repair protein RecF
Ssed_0329 ATP-dependent DNA helicase RecG
Ssed_1150 DNA repair protein RecO
Ssed_2850 recombination protein RecR
Ssed_1281 DNA repair protein RecN
Ssed_3306 putative exonuclease, RdgC
Ssed_1862 type III restriction enzyme, res subunit
Ssed_2303 DNA topoisomerase (ATP-hydrolyzing)
Ssed_0009 DNA topoisomerase (ATP-hydrolyzing)
Ssed_2841 DNA topoisomerase
Ssed_1544 histone family protein DNA-binding protein
Ssed_0600 histone family protein DNA-binding protein
Ssed_4119 transcriptional regulator, fis family
Ssed_2596 integration host factor, alpha subunit
Ssed_2297 integration host factor, beta subunit
Ssed_0391 ATP-dependent DNA helicase RecQ
Ssed_2318 23S rRNA (Gm2251)-methyltransferase
Ssed_1444 histone family protein nucleoid-structuring protein H-NS
Ssed_3422 DNA-directed DNA polymerase
Ssed_2171 DNA-directed DNA polymerase
Ssed_2172 SOS-response transcriptional repressor LexA -like protein
Ssed_0200 Repressor lexA
Ssed_1567 DNA polymerase B region
Ssed_3210 regulatory protein RecX
Ssed_4147 ATP-dependent DNA helicase Rep
Ssed_2255 UvrD/REP helicase
Ssed_1566 helicase C2
Ssed_2535 helicase C2
Ssed_2306 Ribonucleoside-diphosphate reductase
Ssed_2307 Ribonucleoside-diphosphate reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K19789 radD; DNA repair protein RadD
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:sse03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Shewanella sediminis