KEGG Orthology (KO) - Streptomyces alfalfae

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:ssia03030]
     03410 Base excision repair [PATH:ssia03410]
     03420 Nucleotide excision repair [PATH:ssia03420]
     03430 Mismatch repair [PATH:ssia03430]
     03440 Homologous recombination [PATH:ssia03440]
     03450 Non-homologous end-joining [PATH:ssia03450]
       A7J05_04485 Ku protein
       A7J05_12160 Ku protein
       A7J05_32930 Ku protein
       A7J05_12165 ATP-dependent DNA ligase
       A7J05_06180 ATP-dependent DNA ligase
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:ssia03000]
     03021 Transcription machinery [BR:ssia03021]
     03019 Messenger RNA biogenesis [BR:ssia03019]
     03041 Spliceosome
     03011 Ribosome [BR:ssia03011]
     03009 Ribosome biogenesis [BR:ssia03009]
     03016 Transfer RNA biogenesis [BR:ssia03016]
     03012 Translation factors [BR:ssia03012]
     03110 Chaperones and folding catalysts [BR:ssia03110]
     04131 Membrane trafficking [BR:ssia04131]
     04121 Ubiquitin system [BR:ssia04121]
     03051 Proteasome [BR:ssia03051]
     03032 DNA replication proteins [BR:ssia03032]
     03036 Chromosome and associated proteins [BR:ssia03036]
     03400 DNA repair and recombination proteins [BR:ssia03400]
       A7J05_27125 cysteine methyltransferase
       A7J05_06595 cysteine methyltransferase
       A7J05_31085 cysteine methyltransferase
       A7J05_06680 deoxyribodipyrimidine photolyase
       A7J05_30305 uracil-DNA glycosylase
       A7J05_30560 uracil-DNA glycosylase
       A7J05_27975 3-methyladenine DNA glycosylase
       A7J05_16105 adenine glycosylase
       A7J05_16750 endonuclease III
       A7J05_03365 ligB; ATP-dependent DNA ligase
       A7J05_19785 helicase
       A7J05_19095 DNA mismatch repair protein MutT
       A7J05_13240 DNA mismatch repair protein MutT
       A7J05_28140 NUDIX hydrolase
       A7J05_08400 NUDIX hydrolase
       A7J05_09900 DNA hydrolase
       A7J05_23840 NUDIX hydrolase
       A7J05_20510 NUDIX hydrolase
       A7J05_01685 NUDIX hydrolase
       A7J05_02670 NUDIX hydrolase
       A7J05_36155 DNA mismatch repair protein MutT
       A7J05_09700 deoxyuridine 5'-triphosphate nucleotidohydrolase
       A7J05_26990 uracil-DNA glycosylase
       A7J05_06600 DNA-3-methyladenine glycosylase
       A7J05_08335 AraC family transcriptional regulator
       A7J05_13005 3-methyladenine DNA glycosylase
       A7J05_10920 DNA-formamidopyrimidine glycosylase
       A7J05_04210 DNA lyase
       A7J05_10235 DNA glycosylase
       A7J05_23905 DNA glycosylase
       A7J05_07575 exodeoxyribonuclease III
       A7J05_20840 exodeoxyribonuclease III
       A7J05_26325 endonuclease IV
       A7J05_05305 endonuclease V
       A7J05_11365 DNA ligase (NAD(+)) LigA
       A7J05_16445 bifunctional 3'-5' exonuclease/DNA polymerase
       A7J05_26925 DNA polymerase I
       A7J05_27185 excinuclease ABC subunit A
       A7J05_04115 ABC transporter
       A7J05_27140 excinuclease ABC subunit B
       A7J05_14595 ATP-dependent DNA helicase PcrA
       A7J05_12760 ATP-dependent DNA helicase
       A7J05_15095 DNA-directed RNA polymerase subunit beta
       A7J05_15090 DNA-directed RNA polymerase subunit beta'
       A7J05_14895 DNA-directed RNA polymerase subunit alpha
       A7J05_29690 DNA-directed RNA polymerase subunit omega
       A7J05_21170 transcription-repair coupling factor
       A7J05_13500 exodeoxyribonuclease VII large subunit
       A7J05_13505 exodeoxyribonuclease VII small subunit
       A7J05_26565 DNA polymerase III subunit alpha
       A7J05_17910 DNA polymerase III subunit beta
       A7J05_24245 DNA polymerase III subunit delta
       A7J05_16620 DNA polymerase III subunit delta'
       A7J05_23240 DNA polymerase III subunit epsilon
       A7J05_27760 DNA polymerase III subunit epsilon
       A7J05_29420 DNA polymerase III subunit epsilon
       A7J05_08560 DNA polymerase III subunit epsilon
       A7J05_18655 hypothetical protein
       A7J05_23645 single-stranded DNA-binding protein
       A7J05_18045 single-stranded DNA-binding protein
       A7J05_20830 hypothetical protein
       A7J05_16830 very short patch repair endonuclease
       A7J05_23520 helicase
       A7J05_10210 recombinase RecA
       A7J05_29495 Holliday junction DNA helicase RuvA
       A7J05_29500 Holliday junction DNA helicase RuvB
       A7J05_29490 crossover junction endodeoxyribonuclease RuvC
       A7J05_29705 primosome assembly protein PriA
       A7J05_31905 exonuclease
       A7J05_31900 exonuclease SbcCD subunit D
       A7J05_16075 DNA repair protein RadA
       A7J05_17900 DNA replication/repair protein RecF
       A7J05_10955 ATP-dependent DNA helicase RecG
       A7J05_24530 DNA repair protein RecO
       A7J05_17075 recombination protein RecR
       A7J05_28060 DNA repair protein RecN
       A7J05_07485 subtype I-E CRISPR-associated endonuclease Cas1
       A7J05_09580 restriction endonuclease
       A7J05_04485 Ku protein
       A7J05_12160 Ku protein
       A7J05_32930 Ku protein
       A7J05_12165 ATP-dependent DNA ligase
       A7J05_06180 ATP-dependent DNA ligase
       A7J05_17885 DNA gyrase subunit A
       A7J05_09815 DNA topoisomerase IV
       A7J05_17890 DNA gyrase subunit B
       A7J05_09870 DNA topoisomerase IV subunit B
       A7J05_16630 DNA topoisomerase I
       A7J05_22180 integration host factor
       A7J05_15390 ATP-dependent DNA helicase RecQ
       A7J05_09985 recombinase RecQ
       A7J05_30175 DNA polymerase IV
       A7J05_10060 repressor LexA
       A7J05_28270 DNA polymerase III subunit alpha
       A7J05_10205 recombination regulator RecX
       A7J05_10065 ATP-dependent helicase
       A7J05_10230 DEAD/DEAH box helicase
       A7J05_28100 ADP-ribose pyrophosphatase
       A7J05_18370 NUDIX hydrolase
       A7J05_12550 ribonucleoside-diphosphate reductase subunit alpha
       A7J05_10050 ribonucleoside-diphosphate reductase
       A7J05_12555 ribonucleoside-diphosphate reductase
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:3.6.4.12]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:ssia03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: September 22, 2020