KEGG Orthology (KO) - Salmonella enterica subsp. enterica serovar Typhimurium LT2

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     KO
 09100 Metabolism
 
   09101 Carbohydrate metabolism
 
   09102 Energy metabolism
 
   09103 Lipid metabolism
 
   09104 Nucleotide metabolism
 
   09105 Amino acid metabolism
 
   09106 Metabolism of other amino acids
 
   09107 Glycan biosynthesis and metabolism
 
   09108 Metabolism of cofactors and vitamins
     00730 Thiamine metabolism [PATH:stm00730]
     00740 Riboflavin metabolism [PATH:stm00740]
     00750 Vitamin B6 metabolism [PATH:stm00750]
     00760 Nicotinate and nicotinamide metabolism [PATH:stm00760]
     00770 Pantothenate and CoA biosynthesis [PATH:stm00770]
     00780 Biotin metabolism [PATH:stm00780]
     00785 Lipoic acid metabolism [PATH:stm00785]
     00790 Folate biosynthesis [PATH:stm00790]
       STM2193 folE; GTP cyclohydrolase I FolE
       STM1900 ntpA; dihydroneopterin triphosphate diphosphatase
       STM3206 folB; dihydroneopterin aldolase
       STM0183 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase
       STM3295 folP; dihydropteroate synthase
       STM0087 folA; dihydrofolate reductase
       STM2365 folC; bifunctional tetrahydrofolate synthase/dihydrofolate synthase
       STM1711 ribA; GTP cyclohydrolase II
       STM3469 pabA; aminodeoxychorismate synthase component II
       STM1824 pabB; p-aminobenzoate synthetase, component I
       STM1198 pabC; aminodeoxychorismate lyase
       STM2949 ptpS; 6-carboxytetrahydropterin synthase QueD
       STM2951 ygcF; 7-carboxy-7-deazaguanine synthase QueE
       STM0455 ybaX; 7-cyano-7-deazaguanine synthase QueC
       STM2968 yqcD; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF
       STM2950 MBL fold metallo-hydrolase
       STM0802 moaA; cyclic pyranopterin phosphate synthase
       STM0804 moaC; molybdenum cofactor biosynthesis protein C
       STM0806 moaE; molybdenum cofactor biosynthesis protein MoaE
       STM0008 mog; molybdopterin adenylyltransferase
       STM0803 moaB; molybdenum cofactor biosynthesis protein B
       STM0846 moeA; molybdopterin biosynthesis protein
       STM3994 mobA; molybdenum cofactor guanylyltransferase MobA
K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
     00670 One carbon pool by folate [PATH:stm00670]
     00830 Retinol metabolism
     00860 Porphyrin metabolism [PATH:stm00860]
     00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:stm00130]
 
   09109 Metabolism of terpenoids and polyketides
 
   09110 Biosynthesis of other secondary metabolites
 
   09111 Xenobiotics biodegradation and metabolism
 
   09112 Not included in regular maps
 
 09120 Genetic Information Processing
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:stm03000]
     03021 Transcription machinery [BR:stm03021]
     03019 Messenger RNA biogenesis [BR:stm03019]
     03041 Spliceosome
     03011 Ribosome [BR:stm03011]
     03009 Ribosome biogenesis [BR:stm03009]
     03016 Transfer RNA biogenesis [BR:stm03016]
       STM2313 elaC; ribonuclease Z
       STM3204 cca; multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
       STM3519 rtcB; putative cytoplasmic protein
       STM2415 gltX; glutamate--tRNA ligase
       STM0242 proS; proline--tRNA ligase
       STM0046 ileS; isoleucine--tRNA ligase
       STM0648 leuS; leucine tRNA synthetase
       STM2155 metG; methionine--tRNA ligase
       STM0686 glnS; glutamine--tRNA ligase
       STM1909 argS; arginine--tRNA ligase
       STM3040 lysS; lysine--tRNA ligase
       STM1901 aspS; aspartate--tRNA ligase
       STM2827 alaS; alanine--tRNA ligase
       STM1000 asnS; asparagine--tRNA ligase
       STM1333 thrS; threonine--tRNA ligase
       STM0963 serS; serine--tRNA ligase
       STM0537 cysS; cysteine tRNA synthetase
       STM4475 valS; valine--tRNA ligase
       STM2522 hisS; histidine--tRNA ligase
       STM1337 pheS; phenylalanine--tRNA ligase subunit alpha
       STM1338 pheT; phenylalanine--tRNA ligase subunit beta
       STM1449 tyrS; tyrosine--tRNA ligase
       STM3481 trpS; tryptophan--tRNA ligase
       STM4508 trpS2; tryptophan--tRNA ligase
       STM4028 yihZ; D-tyrosyl-tRNA(Tyr) deacylase
       STM1205 ycfF; histidine triad nucleotide-binding protein
       STM3109 yggH; tRNA (guanosine(46)-N7)-methyltransferase TrmB
       STM0243 yaeB; tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
       STM2368 truA; tRNA pseudouridine(38-40) synthase TruA
       STM3284 truB; tRNA pseudouridine(55) synthase TruB
       STM2928 ygbO; tRNA pseudouridine(13) synthase TruD
       STM2543 nifS; IscS subfamily cysteine desulfurase
       STM3402 yrdC; L-threonylcarbamoyladenylate synthase type 1 TsaC
       STM4360 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
       STM3843 trmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
       STM3874 gidA; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
       STM1297 selD; selenophosphate synthase
       STM4404 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ
       STM3840 rnpA; ribonuclease P protein component
       STM3246 rnpB; regulatory RNA
       STM1434 rnt; ribonuclease T
       STM3734 rph; ribonuclease PH
       STM0617 rna; ribonuclease I
       STM1702 rnb; exoribonuclease II
       STM1817 rnd; RNase D
       STM0188 ligT; 2'-5' RNA ligase
       STM4581 yjjK; energy-dependent translational throttle protein EttA
       STM3656 glyQ; glycine--tRNA ligase subunit alpha
       STM3655 glyS; glycine--tRNA ligase subunit beta
       STM0185 yadB; putative glutamyl t-RNA synthetase
       STM0495 ybaK; aminoacyl-tRNA deacylase
       STM1282 yeaK; putative cytoplasmic protein
       STM2568 yfhC; tRNA adenosine(34) deaminase TadA
       STM4243 yjbN; tRNA dihydrouridine(20/20a) synthase DusA
       STM3384 yhdG; tRNA dihydrouridine synthase DusB
       STM2174 yohI; tRNA dihydrouridine(16) synthase DusC
       STM0670 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
       STM1905 yecO; carboxy-S-adenosyl-L-methionine synthase CmoA
       STM1906 yecP; tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB
       STM0991 smtA; tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM
       STM4600 lasT; tRNA/rRNA methyltransferase
       STM4129 trmA; tRNA (uridine(54)-C5)-methyltransferase TrmA
       STM2674 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD
       STM2648 yfiF; putative tRNA/rRNA methyltransferase
       STM3743 spoU; tRNA (guanosine(18)-2'-O)-methyltransferase TrmH
       STM2545 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
       STM3695 yibK; tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL
       STM2642 yfiC; tRNA (adenosine(37)-N6)-methyltransferase TrmM
       STM2964 yqcB; tRNA pseudouridine(65) synthase TruC
       STM0095 rluA; bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA
       STM1234 trmU; tRNA 2-thiouridine(34) synthase MnmA
       STM1654 ydaO; tRNA 2-thiocytidine(32) synthetase TtcA
       STM3578 yhhP; sulfurtransferase TusA
       STM3449 yheL; sulfurtransferase TusB
       STM3450 yheM; sulfurtransferase TusC
       STM3451 yheN; sulfurtransferase TusD
       STM1084 yccK; sulfurtransferase TusE
       STM2541 yfhF; iron-sulfur cluster assembly protein IscA
       STM3048 ygfZ; tRNA-modifying protein YgfZ
       STM4471 miaE; tRNA 2-methylthio-N6-isopentenyl adenosine(37) hydroxylase MiaE
       STM2379 putative peptidase
       STM0404 queA; S-adenosylmethionine-tRNA ribosyltransferase-isomerase
       STM0455 ybaX; 7-cyano-7-deazaguanine synthase QueC
       STM2949 ptpS; 6-carboxytetrahydropterin synthase QueD
       STM2951 ygcF; 7-carboxy-7-deazaguanine synthase QueE
       STM2968 yqcD; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF
       STM4355 yjeS; putative Fe-S protein
       STM0513 ybbB; tRNA 2-selenouridine(34) synthase MnmH
       STM0405 tgt; tRNA guanosine(34) transglycosylase Tgt
       STM0425 thiI; tRNA 4-thiouridine(8) synthase ThiI
       STM0236 mesJ; tRNA lysidine(34) synthetase TilS
       STM2485 ypfI; tRNA cytosine(34) acetyltransferase TmcA
       STM1820 yeaZ; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
       STM3208 gcp; tRNA threonylcarbamoyl adenosine modification protein TsaD
       STM4357 yjeE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
       STM2987 ygdL; tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA
       STM4368 vacB; ribonuclease R
       STM3282 pnp; polyribonucleotide nucleotidyltransferase
       PSLT106 homologue of mvpA, Shigella flexneri
       STM3033 VapC toxin family PIN domain ribonuclease
K00784 rnz; ribonuclease Z [EC:3.1.26.11]
K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
K01008 selD; selenide, water dikinase [EC:2.7.9.3]
K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
K01978 rnpB; M1 RNA
K03683 rnt; ribonuclease T [EC:3.1.13.-]
K00989 rph; ribonuclease PH [EC:2.7.7.56]
K01169 rna; ribonuclease I (enterobacter ribonuclease) [EC:4.6.1.21]
K01147 rnb; exoribonuclease II [EC:3.1.13.1]
K03684 rnd; ribonuclease D [EC:3.1.13.5]
K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
K06020 ettA; energy-dependent translational throttle protein EttA
K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
K07237 tusB; tRNA 2-thiouridine synthesizing protein B
K07236 tusC; tRNA 2-thiouridine synthesizing protein C
K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
K13628 iscA; iron-sulfur cluster assembly protein
K06980 ygfZ; tRNA-modifying protein YgfZ
K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
K12573 rnr; ribonuclease R [EC:3.1.13.1]
K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
     03012 Translation factors [BR:stm03012]
     03110 Chaperones and folding catalysts [BR:stm03110]
     04131 Membrane trafficking [BR:stm04131]
     04121 Ubiquitin system [BR:stm04121]
     03051 Proteasome [BR:stm03051]
     03032 DNA replication proteins [BR:stm03032]
     03036 Chromosome and associated proteins [BR:stm03036]
     03400 DNA repair and recombination proteins [BR:stm03400]
     03029 Mitochondrial biogenesis [BR:stm03029]
 
   09183 Protein families: signaling and cellular processes
 
   09185 Viral protein families
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: March 26, 2024