Tbd_1858 peptidase A8, signal peptidase II
       Tbd_2368 prepilin cysteine protease (C20) PilD
       Tbd_1380 peptidase M52, hydrogen uptake protein
       Tbd_1751 GMP synthase
       Tbd_1908 amidophosphoribosyl transferase
       Tbd_2767 glutamate synthase large subunit
       Tbd_2793 glucosamine-fructose-6-phosphate aminotransferase, isomerising
       Tbd_0292 asparagine synthase, glutamine-hydrolyzing
       Tbd_0298 amidotransferase
       Tbd_0060 asparagine synthase, glutamine-hydrolyzing
       Tbd_1845 putative protease
       Tbd_1797 CAAX amino terminal protease family protein
       Tbd_0899 peptidase M, neutral zinc metallopeptidases, zinc-binding site
       Tbd_2433 oligopeptidase A
       Tbd_0377 insulinase family protein
       Tbd_0378 insulinase family protein
       Tbd_0580 leucyl aminopeptidase
       Tbd_0656 leucyl aminopeptidase
       Tbd_1271 succinyl-diaminopimelate desuccinylase
       Tbd_0784 peptidase M24A, methionine aminopeptidase, subfamily 1
       Tbd_2334 putative XAA-PRO aminopeptidase
       Tbd_1133 peptidase M41, FtsH
       Tbd_2603 heat shock protein HtpX
       Tbd_0568 putative peptidase family M48 protein
       Tbd_0792 peptidase M50, putative membrane-associated zinc metallopeptidase
       Tbd_0769 conserved hypothetical protein
       Tbd_2091 peptidase S1C, Do
       Tbd_1834 putative protease
       Tbd_0647 serine-type D-ala-D-ala-carboxypeptidase
       Tbd_0266 serine-type D-ala-D-ala carboxypeptidase
       Tbd_0083 D-alanyl-D-alanine carboxypeptidase-like protein
       Tbd_0101 peptidase S13, D-Ala-D-Ala carboxypeptidase C
       Tbd_1677 peptidase S14, ClpP
       Tbd_1675 peptidase S16, ATP-dependent protease La
       Tbd_1252 peptidase S16, ATP-dependent protease La
       Tbd_1483 peptidase S24, LexA repressor
       Tbd_2088 peptidase S26A, signal peptidase I
       Tbd_0887 peptidase S33, proline iminopeptidase 1
       Tbd_2392 peptidase S41A, protease
       Tbd_1560 protease
       Tbd_2629 serine protease SohB
       Tbd_2541 putative heat shock protein
       Tbd_1931 putative asparaginase
       Tbd_1410 gamma-glutamyltranspeptidase
       Tbd_1033 probable collagenase
       Tbd_2185 conserved hypothetical protein
       Tbd_2186 putative protease
       Tbd_2148 Zn-dependent protease, modulator of DNA gyrase
       Tbd_0512 putative modulator of DNA gyrase
       Tbd_0604 HflC
       Tbd_0603 HflK

K03101 lspA; signal peptidase II [EC:3.4.23.36]
K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
K03152 thiJ; protein deglycase [EC:3.5.1.124]
K07052 K07052; CAAX protease family protein
K01256 pepN; aminopeptidase N [EC:3.4.11.2]
K01414 prlC; oligopeptidase A [EC:3.4.24.70]
K07263 pqqL; zinc protease [EC:3.4.24.-]
K07263 pqqL; zinc protease [EC:3.4.24.-]
K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
K09933 mtfA; MtfA peptidase
K04771 degP; serine protease Do [EC:3.4.21.107]
K04772 degQ; serine protease DegQ [EC:3.4.21.-]
K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03100 lepB; signal peptidase I [EC:3.4.21.89]
K01259 pip; proline iminopeptidase [EC:3.4.11.5]
K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
K04773 sppA; protease IV [EC:3.4.21.-]
K04774 sohB; serine protease SohB [EC:3.4.21.-]
K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase
K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
K03592 pmbA; PmbA protein
K03568 tldD; TldD protein
K04087 hflC; modulator of FtsH protease HflC
K04088 hflK; modulator of FtsH protease HflK

       Tbd_2377 methylated-DNA-(protein)-cysteine S-methyltransferase
       Tbd_2130 A/G-specific adenine glycosylase MutY
       Tbd_2021 Endonuclease III/Nth
       Tbd_0027 NUDIX hydrolase
       Tbd_2586 DeoxyUTP pyrophosphatase
       Tbd_1481 putative phage DNA polymerase
       Tbd_0703 conserved hypothetical protein
       Tbd_1723 putative phage DNA polymerase
       Tbd_2436 3-methyladenine DNA glycosylase II
       Tbd_0383 formamidopyrimidine-DNA glycolase
       Tbd_2435 exodeoxyribonuclease III xth
       Tbd_0254 DNA-(apurinic or apyrimidinic site) lyase
       Tbd_1771 RecJ exonuclease
       Tbd_0624 NAD-dependent DNA ligase
       Tbd_2453 DNA polymerase A
       Tbd_0436 Excinuclease ABC, A subunit
       Tbd_1568 Excinuclease ABC, B subunit
       Tbd_0701 Excinuclease ABC, C subunit
       Tbd_1306 ATP-dependent DNA helicase
       Tbd_2449 ATP-dependent DNA helicase
       Tbd_0398 DNA-directed RNA polymerase, beta subunit
       Tbd_0399 RNA polymerase I subunit A
       Tbd_0430 DNA-directed RNA polymerase, alpha subunit
       Tbd_0472 RNA polymerase, omega subunit
       Tbd_1656 transcription-repair coupling factor
       Tbd_1159 MutS 1 protein
       Tbd_1517 DNA mismatch repair protein
       Tbd_1511 Exonuclease VII, large subunit
       Tbd_0881 Exonuclease VII, small subunit
       Tbd_0858 DNA polymerase III, alpha subunit
       Tbd_0002 DNA polymerase III, beta chain
       Tbd_0579 putative DNA polymerase III chi subunit
       Tbd_2443 DNA polymerase III, delta subunit
       Tbd_1542 DNA polymerase III delta prime subunit
       Tbd_1662 DNA polymerase III, epsilon subunit
       Tbd_0827 DNA polymerase III, epsilon subunit
       Tbd_0089 Exonuclease
       Tbd_0515 DNA polymerase subunits gamma and tau
       Tbd_0438 Single-strand binding protein
       Tbd_1812 DNA mismatch endonuclease
       Tbd_2197 RecA DNA recombination protein
       Tbd_2213 DNA recombination protein, RuvA
       Tbd_2211 Holliday junction DNA helicase RuvB
       Tbd_2214 Crossover junction endodeoxyribonuclease RuvC
       Tbd_2781 Primosomal protein n
       Tbd_2104 putative primosomal replication protein
       Tbd_0965 DNA repair protein RadA
       Tbd_0469 ATP-dependent DNA helicase RecG
       Tbd_2681 Predicted transcriptional regulator
       Tbd_1077 Predicted transcriptional regulator
       Tbd_2084 Recombination protein O, RecO
       Tbd_0517 RecR protein
       Tbd_2030 DNA repair protein RecN
       Tbd_0033 conserved hypothetical protein
       Tbd_0034 conserved hypothetical protein
       Tbd_2221 conserved hypothetical protein
       Tbd_2246 putative Ku-like DNA-end-binding protein
       Tbd_2247 DNA ligase, ATP-dependent, putative
       Tbd_0948 DNA gyrase, subunit A
       Tbd_0003 DNA gyrase, B subunit
       Tbd_0010 DNA topoisomerase I
       Tbd_0745 conserved hypothetical protein
       Tbd_1674 Histone-like DNA-binding protein
       Tbd_0007 Histone-like DNA-binding protein
       Tbd_2457 Transcriptional Regulator, Fis family
       Tbd_1013 integration host factor, alpha subunit
       Tbd_0957 integration host factor, beta subunit
       Tbd_0896 ATP-dependent DNA helicase RecQ
       Tbd_1483 peptidase S24, LexA repressor
       Tbd_0830 conserved hypothetical protein
       Tbd_0829 conserved hypothetical protein
       Tbd_0828 DNA polymerase III, alpha subunit
       Tbd_2198 putative regulatory protein RecX
       Tbd_1446 DNA polymerase X
       Tbd_0166 ATP-dependent DNA helicase
       Tbd_0997 helicase c2
       Tbd_2635 hypothetical protein
       Tbd_1976 ribonucleoside-diphosphate reductase alpha chain
       Tbd_0058 ribonucleoside-diphosphate reductase alpha chain
       Tbd_1975 ribonucleoside-diphosphate reductase beta chain

K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04485 radA; DNA repair protein RadA/Sms
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]