Messenger RNA Biogenesis - Thalassiosira pseudonana

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     KO
 Eukaryotic type
   mRNA processing factors
   mRNA surveillance and transport factors
     Transport factors
     Surveillance factors
     Factors involved in mRNA localization
     mRNA cycle factors
       Common to processing body (P body) and stress granule
       P-body specific factors
         THAPSDRAFT_22284 predicted protein
         THAPSDRAFT_4253 predicted protein
         THAPS_19826 predicted protein
         THAPSDRAFT_32314 predicted protein
         THAPSDRAFT_37962 predicted protein
         THAPSDRAFT_bd1125 predicted protein
         THAPSDRAFT_bd1124 predicted protein
         THAPSDRAFT_31564 predicted protein
         THAPSDRAFT_262381 hypothetical protein
         THAPSDRAFT_10683 predicted protein
         THAPS_7311 human U6 snRNA-associated protein LSm8-like protein
         THAPS_7313 human U6 snRNA-associated Sm-like protein LSm8-like protein
         THAPSDRAFT_38230 predicted protein
         THAPSDRAFT_29304 TUB1; tubulin alpha
         THAPSDRAFT_37472 predicted protein
         THAPS_20268 predicted protein
         THAPSDRAFT_37963 predicted protein
         THAPSDRAFT_17845 predicted protein
         THAPS_10811 predicted protein
         THAPSDRAFT_20763 predicted protein
         THAPSDRAFT_268896 predicted protein
         THAPSDRAFT_29496 predicted protein
         THAPSDRAFT_24835 predicted protein
         THAPSDRAFT_262352 hypothetical protein
         THAPSDRAFT_6383 19kDa subunit of RNA polymerase
         THAPSDRAFT_16613 predicted protein
K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
K10357 MYO5; myosin V 
K07374 TUBA; tubulin alpha 
K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
K12616 EDC4; enhancer of mRNA-decapping protein 4 
K14327 UPF2; regulator of nonsense transcripts 2 
K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1] 
       Stress granule specific factors
   mRNA degradation factors
     5'-3' decay
     3'-5' decay
       Core exosome factors
       Exosome cofactors
       TRAMP complex
       Ski complex
       Ccr4-NOT complex
         THAPS_10811 predicted protein
         THAPSDRAFT_37472 predicted protein
         THAPS_20268 predicted protein
         THAPSDRAFT_37963 predicted protein
         THAPSDRAFT_17845 predicted protein
         THAPSDRAFT_20763 predicted protein
         THAPSDRAFT_262698 CDP1; cell differentiation protein
         THAPSDRAFT_23811 predicted protein
K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
K12606 RCD1; CCR4-NOT transcription complex subunit 9 
K12608 CAF16; CCR4-NOT complex subunit CAF16 
       Pan complex
       Other 3'-5' decay factors
     Other degradation factors
 
 Prokaryotic type

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Last updated: September 2, 2020