| |
KO |
 09100 Metabolism
|
|
|
 09120 Genetic Information Processing
|
|
|
09121 Transcription
|
|
|
09122 Translation
|
|
|
09123 Folding, sorting and degradation
|
|
|
09124 Replication and repair
|
03030 DNA replication [PATH:wch03030]
|
 wcw_1703 dnaQ3; DNA polymerase III epsilon chain
wcw_0615 dnaQ1; DNA polymerase III, epsilon chain
wcw_1523 dnaE; DNA polymerase III, alpha subunit
wcw_1423 dnaX; DNA polymerase III, gamma and tau subunits
wcw_1015 putative DNA polymerase III, delta' subunit
wcw_0980 putative DNA polymerase III delta subunit
wcw_1042 DNA polymerase III, chi subunit
wcw_1180 dnaN; DNA polymerase III, beta chain
wcw_1775 dnaB; replicative DNA helicase DnaB
wcw_0669 putative replicative DNA helicase
wcw_0774 dnaG; DNA primase dnaG
wcw_1382 ssb; Single-stranded DNA-binding protein
wcw_0971 putative single-stranded DNA-binding protein
wcw_0701 rnhB; Ribonuclease HII
wcw_0754 rnhC; Ribonuclease HIII
wcw_1645 polA; DNA polymerase I
wcw_1228 ligA; NAD-dependent DNA ligase LigA
|
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
|
03410 Base excision repair [PATH:wch03410]
|
03420 Nucleotide excision repair [PATH:wch03420]
|
03430 Mismatch repair [PATH:wch03430]
|
wcw_1353 mutS; DNA mismatch repair protein mutS
wcw_1868 putative DNA mismatch repair protein mutL
wcw_1845 uvrD; DNA helicase
wcw_1156 xseA; exodeoxyribonuclease VII, large subunit
wcw_1157 xseB; Exodeoxyribonuclease 7 small subunit
wcw_1681 recJ; single-stranded-DNA-specific exonuclease RecJ
wcw_1382 ssb; Single-stranded DNA-binding protein
wcw_0971 putative single-stranded DNA-binding protein
wcw_1523 dnaE; DNA polymerase III, alpha subunit
wcw_1180 dnaN; DNA polymerase III, beta chain
wcw_1423 dnaX; DNA polymerase III, gamma and tau subunits
wcw_0980 putative DNA polymerase III delta subunit
wcw_1015 putative DNA polymerase III, delta' subunit
wcw_1703 dnaQ3; DNA polymerase III epsilon chain
wcw_0615 dnaQ1; DNA polymerase III, epsilon chain
wcw_1042 DNA polymerase III, chi subunit
wcw_1228 ligA; NAD-dependent DNA ligase LigA
|
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
|
03440 Homologous recombination [PATH:wch03440]
|
wcw_1681 recJ; single-stranded-DNA-specific exonuclease RecJ
wcw_1382 ssb; Single-stranded DNA-binding protein
wcw_0971 putative single-stranded DNA-binding protein
wcw_1179 putative DNA replication and repair protein recF
wcw_1587 putative DNA repair protein recO
wcw_1190 recR; Recombination protein recR
wcw_1978 recA; bacterial DNA recombination protein recA
wcw_1645 polA; DNA polymerase I
wcw_1787 ruvA; Holliday junction ATP-dependent DNA helicase ruvA
wcw_0966 ruvB; Holliday junction ATP-dependent DNA helicase ruvB
wcw_1788 ruvC; Holliday junction endonuclease RuvC
wcw_0033 recB; exodeoxyribonuclease V beta chain
wcw_0032 recC; exodeoxyribonuclease V gamma chain
wcw_0034 recD1; exodeoxyribonuclease V alpha chain
wcw_0772 recD3; exodeoxyribonuclease V, alpha subunit
wcw_1523 dnaE; DNA polymerase III, alpha subunit
wcw_1180 dnaN; DNA polymerase III, beta chain
wcw_1423 dnaX; DNA polymerase III, gamma and tau subunits
wcw_0980 putative DNA polymerase III delta subunit
wcw_1015 putative DNA polymerase III, delta' subunit
wcw_1703 dnaQ3; DNA polymerase III epsilon chain
wcw_0615 dnaQ1; DNA polymerase III, epsilon chain
wcw_1042 DNA polymerase III, chi subunit
wcw_1358 priA; Primosomal protein N'
|
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
|
03450 Non-homologous end-joining
|
03460 Fanconi anemia pathway
|
|
|
09126 Chromosome
|
|
|
09125 Information processing in viruses
|
|
|
09130 Environmental Information Processing
|
|
|
09140 Cellular Processes
|
|
|
09150 Organismal Systems
|
|
|
09160 Human Diseases
|
|
|
09180 Brite Hierarchies
|
|
|
09181 Protein families: metabolism
|
|
|
09182 Protein families: genetic information processing
|
03000 Transcription factors [BR:wch03000]
|
03021 Transcription machinery [BR:wch03021]
|
03019 Messenger RNA biogenesis [BR:wch03019]
|
03041 Spliceosome
|
03011 Ribosome [BR:wch03011]
|
03009 Ribosome biogenesis [BR:wch03009]
|
03016 Transfer RNA biogenesis [BR:wch03016]
|
03012 Translation factors [BR:wch03012]
|
03110 Chaperones and folding catalysts [BR:wch03110]
|
04131 Membrane trafficking [BR:wch04131]
|
04121 Ubiquitin system
|
03051 Proteasome [BR:wch03051]
|
03032 DNA replication proteins [BR:wch03032]
|
wcw_1690 dcm; C-5 cytosine-specific DNA methylase
wcw_1333 ihfA; Integration host factor subunit alpha (IHF-alpha)
wcw_0277 dnaA1; Chromosomal replication initiator protein dnaA
wcw_1006 dnaA3; Chromosomal replication initiator protein dnaA
wcw_1775 dnaB; replicative DNA helicase DnaB
wcw_0669 putative replicative DNA helicase
wcw_0774 dnaG; DNA primase dnaG
wcw_1382 ssb; Single-stranded DNA-binding protein
wcw_0971 putative single-stranded DNA-binding protein
wcw_1523 dnaE; DNA polymerase III, alpha subunit
wcw_1180 dnaN; DNA polymerase III, beta chain
wcw_1042 DNA polymerase III, chi subunit
wcw_0980 putative DNA polymerase III delta subunit
wcw_1015 putative DNA polymerase III, delta' subunit
wcw_1703 dnaQ3; DNA polymerase III epsilon chain
wcw_0615 dnaQ1; DNA polymerase III, epsilon chain
wcw_1423 dnaX; DNA polymerase III, gamma and tau subunits
wcw_0701 rnhB; Ribonuclease HII
wcw_0754 rnhC; Ribonuclease HIII
wcw_1645 polA; DNA polymerase I
wcw_1228 ligA; NAD-dependent DNA ligase LigA
wcw_1012 gyrA; DNA gyrase subunit A
wcw_1011 gyrB; DNA gyrase subunit B
wcw_1561 parC; DNA topoisomerase IV, subunit A
wcw_1562 parE; DNA topoisomerase IV, subunit B
wcw_1713 topA; DNA topoisomerase I
wcw_0920 topB; DNA topoisomerase III
|
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K05788 ihfB; integration host factor subunit beta
K02313 dnaA; chromosomal replication initiator protein
K02313 dnaA; chromosomal replication initiator protein
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
|
03036 Chromosome and associated proteins [BR:wch03036]
|
03400 DNA repair and recombination proteins [BR:wch03400]
|
wcw_1890 ung; uracil-DNA glycosylase
wcw_0043 mutY; A/G-specific adenine glycosylase MutY
wcw_1786 nth; endonuclease III
wcw_1857 mutT; mutator mutT protein
wcw_0952 conserved hypothetical protein
wcw_0247 dut; deoxyuridine 5`-triphosphate nucleotidohydrolase
wcw_0654 methylated-DNA--protein-cysteinemethyltransferase
wcw_0653 tag; DNA-3-methyladenine glycosylase I
wcw_1567 nfo; Endonuclease IV
wcw_1681 recJ; single-stranded-DNA-specific exonuclease RecJ
wcw_1228 ligA; NAD-dependent DNA ligase LigA
wcw_1645 polA; DNA polymerase I
wcw_1291 uvrA; UvrABC system protein A
wcw_0192 uvrB; UvrABC system protein B
wcw_0910 uvrC; UvrABC system protein C
wcw_1845 uvrD; DNA helicase
wcw_0592 rpoB; DNA-directed RNA polymerase beta chain
wcw_0593 rpoC; DNA-directed RNA polymerase beta' chain
wcw_1481 rpoA; DNA-directed RNA polymerase, alpha subunit
wcw_0707 conserved hypothetical protein
wcw_0233 putative transcription-repair-coupling factor
wcw_1353 mutS; DNA mismatch repair protein mutS
wcw_1868 putative DNA mismatch repair protein mutL
wcw_1156 xseA; exodeoxyribonuclease VII, large subunit
wcw_1157 xseB; Exodeoxyribonuclease 7 small subunit
wcw_1523 dnaE; DNA polymerase III, alpha subunit
wcw_1180 dnaN; DNA polymerase III, beta chain
wcw_1042 DNA polymerase III, chi subunit
wcw_0980 putative DNA polymerase III delta subunit
wcw_1015 putative DNA polymerase III, delta' subunit
wcw_1703 dnaQ3; DNA polymerase III epsilon chain
wcw_0615 dnaQ1; DNA polymerase III, epsilon chain
wcw_1423 dnaX; DNA polymerase III, gamma and tau subunits
wcw_1382 ssb; Single-stranded DNA-binding protein
wcw_0971 putative single-stranded DNA-binding protein
wcw_0033 recB; exodeoxyribonuclease V beta chain
wcw_0032 recC; exodeoxyribonuclease V gamma chain
wcw_0034 recD1; exodeoxyribonuclease V alpha chain
wcw_0772 recD3; exodeoxyribonuclease V, alpha subunit
wcw_1978 recA; bacterial DNA recombination protein recA
wcw_1787 ruvA; Holliday junction ATP-dependent DNA helicase ruvA
wcw_0966 ruvB; Holliday junction ATP-dependent DNA helicase ruvB
wcw_1788 ruvC; Holliday junction endonuclease RuvC
wcw_1358 priA; Primosomal protein N'
wcw_0421 sbcC; exonuclease SbcC
wcw_0420 sbcD; exonuclease SbcD
wcw_0251 radA; DNA repair protein RadA
wcw_1179 putative DNA replication and repair protein recF
wcw_1587 putative DNA repair protein recO
wcw_1190 recR; Recombination protein recR
wcw_0752 recN; DNA repair protein recN
wcw_0518 conserved hypothetical protein
wcw_1012 gyrA; DNA gyrase subunit A
wcw_1011 gyrB; DNA gyrase subunit B
wcw_1713 topA; DNA topoisomerase I
wcw_1333 ihfA; Integration host factor subunit alpha (IHF-alpha)
wcw_0493 lexA; putative LexA repressor
wcw_1560 recX; putative regulatory protein recX
wcw_1950 dinG; putative ATP-dependent helicase dinG
wcw_1591 nrdA; ribonucleoside-diphosphate reductase alpha subunit
wcw_1592 nrdB; ribonucleoside-diphosphate reductase beta subunit
wcw_1381 putative phosphoesterase, RecJ-like protein
|
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05788 ihfB; integration host factor subunit beta
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
|
03029 Mitochondrial biogenesis [BR:wch03029]
|
|
|
09183 Protein families: signaling and cellular processes
|
|
|
09185 Viral protein families
|
|
|
09184 RNA family
|
|
|
09190 Not Included in Pathway or Brite
|
KEGG Orthology (KO) - Waddlia chondrophila