09100 Metabolism
09120 Genetic Information Processing
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:xpe03000]
03021 Transcription machinery [BR:xpe03021]
03019 Messenger RNA biogenesis [BR:xpe03019]
03041 Spliceosome
03011 Ribosome [BR:xpe03011]
03009 Ribosome biogenesis [BR:xpe03009]
03016 Transfer RNA biogenesis [BR:xpe03016]
BJD13_04485 ribonuclease BJD13_13130 multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase BJD13_19235 RNA-splicing ligase RtcB BJD13_02370 glutamate--tRNA ligase BJD13_21295 proline--tRNA ligase BJD13_10370 isoleucine--tRNA ligase BJD13_02720 leucine--tRNA ligase BJD13_09645 methionine--tRNA ligase BJD13_12310 glutamine--tRNA ligase BJD13_19380 arginine--tRNA ligase BJD13_06995 lysine--tRNA ligase BJD13_23095 aspartate--tRNA ligase BJD13_07885 alanine--tRNA ligase BJD13_08505 asparagine--tRNA ligase BJD13_03505 threonine--tRNA ligase BJD13_08325 serine--tRNA ligase BJD13_04630 cysteine--tRNA ligase BJD13_21340 valine--tRNA ligase BJD13_07220 histidine--tRNA ligase BJD13_03525 phenylalanine--tRNA ligase subunit alpha BJD13_03530 phenylalanine--tRNA ligase subunit beta BJD13_19475 tyrosine--tRNA ligase BJD13_19040 tryptophan--tRNA ligase BJD13_19990 D-tyrosyl-tRNA(Tyr) deacylase BJD13_11155 histidine triad nucleotide-binding protein BJD13_22615 tRNA (guanosine(46)-N7)-methyltransferase TrmB BJD13_03040 tRNA pseudouridine(38-40) synthase TruA BJD13_03225 tRNA pseudouridine(55) synthase TruB BJD13_07985 tRNA pseudouridine(13) synthase TruD BJD13_19890 tRNA threonylcarbamoyladenosine biosynthesis protein RimN BJD13_07930 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA BJD13_17015 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE BJD13_15055 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG BJD13_23580 3'(2'),5'-bisphosphate nucleotidase BJD13_17000 ribonuclease P protein component BJD13_12890 rnpB; RNase P RNA component class A BJD13_08760 ribonuclease T BJD13_22170 ribonuclease PH BJD13_04335 ribonuclease D BJD13_09750 2'-5' RNA ligase BJD13_11020 hypothetical protein BJD13_17395 RNA 2'-phosphotransferase BJD13_13030 energy-dependent translational throttle protein EttA BJD13_17900 glycine--tRNA ligase subunit alpha BJD13_17905 glycine--tRNA ligase subunit beta BJD13_04420 tRNA glutamyl-Q(34) synthetase GluQRS BJD13_12135 aminoacyl-tRNA deacylase BJD13_05125 tRNA-specific adenosine deaminase BJD13_18925 tRNA dihydrouridine(20/20a) synthase DusA BJD13_12630 tRNA dihydrouridine synthase DusB BJD13_04220 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB BJD13_10165 tRNA (guanosine(37)-N1)-methyltransferase TrmD BJD13_22540 RNA methyltransferase BJD13_04500 RNA methyltransferase BJD13_15900 tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL BJD13_15830 pseudouridylate synthase BJD13_17330 pseudouridylate synthase BJD13_06335 tRNA 2-thiouridine(34) synthase MnmA BJD13_17825 tRNA 2-thiocytidine(32) synthetase TtcA BJD13_08495 Fe-S cluster assembly protein HesB BJD13_05305 folate-binding protein YgfZ BJD13_03930 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA BJD13_23200 7-cyano-7-deazaguanine synthase QueC BJD13_21080 6-carboxytetrahydropterin synthase QueD BJD13_23190 7-carboxy-7-deazaguanine synthase QueE BJD13_19725 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF BJD13_04370 tRNA epoxyqueuosine(34) reductase QueG BJD13_15365 hypothetical protein BJD13_03935 tRNA guanosine(34) transglycosylase Tgt BJD13_02820 tRNA lysidine(34) synthetase TilS BJD13_23365 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB BJD13_19595 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD BJD13_04380 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE BJD13_09215 tRNA threonylcarbamoyladenosine dehydratase BJD13_08785 ribonuclease R BJD13_03235 polyribonucleotide nucleotidyltransferase
K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] K01978 rnpB; M1 RNA K03683 rnt; ribonuclease T [EC:3.1.13.-] K00989 rph; ribonuclease PH [EC:2.7.7.56] K03684 rnd; ribonuclease D [EC:3.1.13.5] K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-] K06020 ettA; energy-dependent translational throttle protein EttA K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA K13628 iscA; iron-sulfur cluster assembly protein K06980 ygfZ; tRNA-modifying protein YgfZ K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6] K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase K12573 rnr; ribonuclease R [EC:3.1.13.1] K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
03012 Translation factors [BR:xpe03012]
03110 Chaperones and folding catalysts [BR:xpe03110]
04131 Membrane trafficking [BR:xpe04131]
04121 Ubiquitin system
03051 Proteasome [BR:xpe03051]
03032 DNA replication proteins [BR:xpe03032]
03036 Chromosome and associated proteins [BR:xpe03036]
03400 DNA repair and recombination proteins [BR:xpe03400]
03029 Mitochondrial biogenesis [BR:xpe03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite