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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:ypp03030]
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03410 Base excision repair [PATH:ypp03410]
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03420 Nucleotide excision repair [PATH:ypp03420]
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03430 Mismatch repair [PATH:ypp03430]
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03440 Homologous recombination [PATH:ypp03440]
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 YPDSF_0626 exonuclease RecJ
YPDSF_3647 single-strand binding protein
YPDSF_0003 DNA replication and repair protein RecF
YPDSF_1551 DNA replication and repair protein RecO
YPDSF_2757 DNA replication and repair protein RecR
YPDSF_3054 RecA protein
YPDSF_3886 DNA polymerase I
YPDSF_1065 Holliday junction DNA helicase subunit RuvA
YPDSF_1064 Holliday junction DNA helicase subunit RuvB
YPDSF_1066 Holliday junction endonuclease RuvC
YPDSF_3869 ATP-dependent DNA helicase RecG
YPDSF_1695 DNA helicase/exodeoxyribonuclease V, beta subunit
YPDSF_1697 DNA helicase/exodeoxyribonuclease V, gamma subunit
YPDSF_1694 DNA helicase/exodeoxyribonuclease V, alpha subunit
YPDSF_1653 DNA polymerase III, alpha subunit
YPDSF_4091 DNA polymerase III
YPDSF_0002 DNA polymerase III, beta subunit
YPDSF_2759 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
YPDSF_2645 DNA polymerase III, delta subunit
YPDSF_1841 DNA polymerase III, delta prime subunit
YPDSF_1630 DNA polymerase III, epsilon subunit
YPDSF_1341 DNA polymerase III, theta subunit
YPDSF_3252 DNA polymerase III, chi subunit
YPDSF_3797 replication restart DNA helicase PriA
YPDSF_2762 restart primosome assembly protein PriC
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:ypp03000]
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03021 Transcription machinery [BR:ypp03021]
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03019 Messenger RNA biogenesis [BR:ypp03019]
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03041 Spliceosome
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03011 Ribosome [BR:ypp03011]
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03009 Ribosome biogenesis [BR:ypp03009]
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03016 Transfer RNA biogenesis [BR:ypp03016]
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03012 Translation factors [BR:ypp03012]
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03110 Chaperones and folding catalysts [BR:ypp03110]
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04131 Membrane trafficking [BR:ypp04131]
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04121 Ubiquitin system [BR:ypp04121]
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03051 Proteasome [BR:ypp03051]
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03032 DNA replication proteins [BR:ypp03032]
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03036 Chromosome and associated proteins [BR:ypp03036]
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03400 DNA repair and recombination proteins [BR:ypp03400]
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YPDSF_0844 methylated-DNA--protein-cysteine methyltransferase
YPDSF_1576 Deoxyribodipyrimidine photo-lyase type I
YPDSF_1567 Uracil-DNA glycosylase
YPDSF_0562 A/G-specific DNA-adenine glycosylase
YPDSF_0896 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
YPDSF_3077 mutator protein MutT
YPDSF_3858 deoxyuridine 5'-triphosphate nucleotidohydrolase
YPDSF_3834 transcriptional regulator, AraC family
YPDSF_1290 glycosidase
YPDSF_0021 DNA-3-methyladenine glycosylase I
YPDSF_3853 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
YPDSF_0966 Exodeoxyribonuclease III
YPDSF_2391 Endonuclease IV
YPDSF_3731 Endonuclease V
YPDSF_0626 exonuclease RecJ
YPDSF_3864 DNA ligase
YPDSF_2097 DNA ligase
YPDSF_3886 DNA polymerase I
YPDSF_3648 Excinuclease ABC subunit A
YPDSF_2541 Excinuclease ABC subunit B
YPDSF_1260 Excinuclease ABC subunit C
YPDSF_3458 ATP-dependent DNA helicase UvrD
YPDSF_3745 DNA-directed RNA polymerase beta chain
YPDSF_3744 DNA-directed RNA polymerase beta' chain
YPDSF_0156 DNA-directed RNA polymerase alpha chain
YPDSF_3866 DNA-directed RNA polymerase, omega chain
YPDSF_1824 transcription-repair coupling factor
YPDSF_3006 DNA mismatch repair protein MutS
YPDSF_3603 DNA mismatch repair protein MutL
YPDSF_1706 DNA mismatch repair protein MutH
YPDSF_1418 Exodeoxyribonuclease I subunit C
YPDSF_2217 Exodeoxyribonuclease VII large subunit
YPDSF_2810 Exodeoxyribonuclease VII small subunit
YPDSF_1653 DNA polymerase III, alpha subunit
YPDSF_4091 DNA polymerase III
YPDSF_0002 DNA polymerase III, beta subunit
YPDSF_3252 DNA polymerase III, chi subunit
YPDSF_2645 DNA polymerase III, delta subunit
YPDSF_1841 DNA polymerase III, delta prime subunit
YPDSF_1630 DNA polymerase III, epsilon subunit
YPDSF_2759 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
YPDSF_1341 DNA polymerase III, theta subunit
YPDSF_3647 single-strand binding protein
YPDSF_0081 DNA adenine methylase Dam
YPDSF_1035 methyltransferase
YPDSF_1695 DNA helicase/exodeoxyribonuclease V, beta subunit
YPDSF_1697 DNA helicase/exodeoxyribonuclease V, gamma subunit
YPDSF_1694 DNA helicase/exodeoxyribonuclease V, alpha subunit
YPDSF_3054 RecA protein
YPDSF_1065 Holliday junction DNA helicase subunit RuvA
YPDSF_1064 Holliday junction DNA helicase subunit RuvB
YPDSF_1066 Holliday junction endonuclease RuvC
YPDSF_3797 replication restart DNA helicase PriA
YPDSF_2762 restart primosome assembly protein PriC
YPDSF_2840 hypothetical protein
YPDSF_2839 Exodeoxyribonuclease I subunit D
YPDSF_3191 DNA repair protein RadA
YPDSF_0003 DNA replication and repair protein RecF
YPDSF_3869 ATP-dependent DNA helicase RecG
YPDSF_1551 DNA replication and repair protein RecO
YPDSF_2757 DNA replication and repair protein RecR
YPDSF_2592 DNA repair protein RecN
YPDSF_2842 recombination associated protein RdgC
YPDSF_1882 CRISPR-associated protein, Cas1 family
YPDSF_2429 DEAD box helicase family protein
YPDSF_0096 hypothetical protein
YPDSF_2477 DNA gyrase subunit A
YPDSF_0004 DNA gyrase subunit B
YPDSF_0917 DNA topoisomerase I
YPDSF_3729 bacterial nucleoid protein HU alpha subunit
YPDSF_2790 bacterial nucleoid protein HU beta subunit
YPDSF_0260 DNA-binding protein Fis
YPDSF_0723 integration host factor alpha-subunit
YPDSF_2302 integration host factor beta-subunit
YPDSF_3450 ATP-dependent DNA helicase RecQ
YPDSF_0958 nucleoid protein H-NS
YPDSF_2858 DNA-damage-inducible protein P
YPDSF_3657 SOS-response transcriptional repressor, LexA
YPDSF_3116 DNA damage-inducible DNA polymerase II
YPDSF_1860 DNA-damage-inducible protein I
YPDSF_3055 regulatory protein
YPDSF_3489 ATP-dependent DNA helicase Rep
YPDSF_1534 helicase IV
YPDSF_2487 ATP-dependent helicase DinG
YPDSF_1051 DEAD box family helicase
YPDSF_2479 ribonucleoside-diphosphate reductase class Ia alpha subunit
YPDSF_1623 ribonucleoside-diphosphate reductase class Ib alpha subunit
YPDSF_4071 ribonucleoside-diphosphate reductase class Ia alpha subunit
YPDSF_1624 ribonucleoside-diphosphate reductase class Ib beta subunit
YPDSF_4070 ribonucleoside-diphosphate reductase class Ia beta subunit
YPDSF_2480 ribonucleoside-diphosphate reductase class Ia beta subunit
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03573 mutH; DNA mismatch repair protein MutH
K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04067 priC; primosomal replication protein N''
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K15342 cas1; CRISP-associated protein Cas1
K19789 radD; DNA repair protein RadD
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K05787 hupA; DNA-binding protein HU-alpha
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K12149 dinI; DNA-damage-inducible protein I
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03658 helD; DNA helicase IV [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:ypp03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Yersinia pestis Pestoides F (biovar Antiqua)