KEGG pathway modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:T30533_00010 T30533_01200 T30533_01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:T30533_00010 T30533_01200 T30533_01230 T30533_01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:T30533_00010 T30533_00020 T30533_01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:T30533_00010 T30533_00020 T30533_00620 T30533_01200 T30533_01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:T30533_00020 T30533_01200 T30533_01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:T30533_00020 T30533_01200 T30533_01210 T30533_01230 T30533_01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:T30533_00020 T30533_01200 T30533_01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:T30533_00030 T30533_01200 T30533_01100 T30533_01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:T30533_00030 T30533_01200 T30533_01100 T30533_01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:T30533_00030 T30533_01200 T30533_01230 T30533_01100 T30533_01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:T30533_00030 T30533_00230 T30533_01200 T30533_01230 T30533_01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:T30533_00030 T30533_01200 T30533_01100 T30533_01120]

Other carbohydrate metabolism
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:T30533_00040 T30533_00030 T30533_01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:T30533_00040 T30533_00030 T30533_01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:T30533_00052 T30533_01100]
M00550 Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:T30533_00053 T30533_01100 T30533_01120]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:T30533_00500 T30533_01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:T30533_00500 T30533_01100]
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:T30533_00500 T30533_01100 T30533_01110]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:T30533_00520 T30533_01250 T30533_01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:T30533_00520 T30533_00052 T30533_01250 T30533_01100]
M00012 Glyoxylate cycle [PATH:T30533_00630 T30533_01200 T30533_01100 T30533_01110]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:T30533_00620 T30533_00710 T30533_01200 T30533_01100 T30533_01120]
M00169 CAM (Crassulacean acid metabolism), light [PATH:T30533_00620 T30533_00710 T30533_01200 T30533_01100 T30533_01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:T30533_00430 T30533_00620 T30533_00720 T30533_01200 T30533_01100 T30533_01120]

Methane metabolism
Nitrogen metabolism
M00530 Dissimilatory nitrate reduction, nitrate => ammonia [PATH:T30533_00910 T30533_01100 T30533_01120]

Sulfur metabolism
Photosynthesis
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:T30533_00190]
M00149 Succinate dehydrogenase, prokaryotes [PATH:T30533_00190]
M00150 Fumarate reductase, prokaryotes [PATH:T30533_00190]
M00151 Cytochrome bc1 complex respiratory unit [PATH:T30533_00190]
M00155 Cytochrome c oxidase, prokaryotes [PATH:T30533_00190]
M00153 Cytochrome bd ubiquinol oxidase [PATH:T30533_00190]
M00417 Cytochrome o ubiquinol oxidase [PATH:T30533_00190]
M00156 Cytochrome c oxidase, cbb3-type [PATH:T30533_00190]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:T30533_00190 T30533_00195]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:T30533_00061 T30533_01212 T30533_01100]
M00083 Fatty acid biosynthesis, elongation [PATH:T30533_00061 T30533_01212 T30533_01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:T30533_00061 T30533_00071 T30533_01212 T30533_01100]
M00087 beta-Oxidation [PATH:T30533_00071 T30533_01212 T30533_01100]

Sterol biosynthesis
Lipid metabolism
M00091 Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:T30533_00564 T30533_01100]
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:T30533_00564 T30533_01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:T30533_00230 T30533_01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:T30533_00230 T30533_01232 T30533_01240 T30533_01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:T30533_00230 T30533_01232 T30533_01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:T30533_00230 T30533_00240 T30533_01232 T30533_01100]

Pyrimidine metabolism
M00051 De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:T30533_00240 T30533_01240 T30533_01100]
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:T30533_00240 T30533_01232 T30533_01240 T30533_01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:T30533_00240 T30533_01232 T30533_01100]
M00046 Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:T30533_00240 T30533_01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:T30533_00260 T30533_00680 T30533_01200 T30533_01230 T30533_01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:T30533_00260 T30533_01230 T30533_01100 T30533_01110]
M00555 Betaine biosynthesis, choline => betaine [PATH:T30533_00260 T30533_01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:T30533_00270 T30533_00920 T30533_01200 T30533_01230 T30533_01100 T30533_01110]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:T30533_00270 T30533_01230 T30533_01100]
M00035 Methionine degradation [PATH:T30533_00270 T30533_01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:T30533_00290 T30533_00770 T30533_01210 T30533_01230 T30533_01100 T30533_01110]
M00535 Isoleucine biosynthesis, pyruvate => 2-oxobutanoate [PATH:T30533_00290 T30533_00660 T30533_01210 T30533_01230 T30533_01100]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:T30533_00290 T30533_01230 T30533_01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:T30533_00290 T30533_01210 T30533_01230 T30533_01100 T30533_01110]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:T30533_00300 T30533_01230 T30533_01100]
M00525 Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine [PATH:T30533_00300 T30533_01230 T30533_01100]
M00526 Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine [PATH:T30533_00300 T30533_01230 T30533_01100]
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:T30533_00300 T30533_01230 T30533_01100 T30533_01110]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:T30533_00220 T30533_01210 T30533_01230 T30533_01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:T30533_00220 T30533_01230 T30533_01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:T30533_00330 T30533_01230 T30533_01100]

Polyamine biosynthesis
M00133 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:T30533_00330 T30533_01100]
M00134 Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:T30533_00330 T30533_01100]

Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:T30533_00340 T30533_01230 T30533_01100 T30533_01110]
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:T30533_00340 T30533_01100]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:T30533_00400 T30533_01230 T30533_01100 T30533_01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:T30533_00400 T30533_01230 T30533_01100 T30533_01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:T30533_00400 T30533_01230 T30533_01100 T30533_01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:T30533_00400 T30533_01230 T30533_01100]

Other amino acid metabolism
M00027 GABA (gamma-Aminobutyrate) shunt [PATH:T30533_00250 T30533_00650 T30533_01100]
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:T30533_00480 T30533_01240 T30533_01100]

Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
M00060 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:T30533_00540 T30533_01100]
M00063 CMP-KDO biosynthesis [PATH:T30533_00540 T30533_01250 T30533_01100]
M00064 ADP-L-glycero-D-manno-heptose biosynthesis [PATH:T30533_00540 T30533_01250 T30533_01100]
M00922 CMP-Neu5Ac biosynthesis [PATH:T30533_00541 T30533_01250 T30533_01100]

Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:T30533_00730 T30533_01240 T30533_01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:T30533_00730 T30533_01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:T30533_00740 T30533_01240 T30533_01100 T30533_01110]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:T30533_00750 T30533_01240 T30533_01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:T30533_00760 T30533_01240 T30533_01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:T30533_00770 T30533_01240 T30533_01100 T30533_01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:T30533_00770 T30533_01240 T30533_01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:T30533_00780 T30533_01240 T30533_01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:T30533_00780 T30533_01240 T30533_01100]
M00577 Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin [PATH:T30533_00780 T30533_01240 T30533_01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:T30533_00785 T30533_01240 T30533_01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:T30533_00790 T30533_00670 T30533_01240 T30533_01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:T30533_00790 T30533_01240 T30533_01100]
M00140 C1-unit interconversion, prokaryotes [PATH:T30533_00670 T30533_01240 T30533_01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:T30533_00860 T30533_01240 T30533_01100 T30533_01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH:T30533_00860 T30533_01240 T30533_01100 T30533_01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:T30533_00860 T30533_01240 T30533_01100 T30533_01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:T30533_00860 T30533_01240 T30533_01100]
M00847 Heme biosynthesis, archaea, siroheme => heme [PATH:T30533_00860 T30533_01240 T30533_01100 T30533_01110]
M00924 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:T30533_00860 T30533_01240 T30533_01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:T30533_00860 T30533_01240 T30533_01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:T30533_00130 T30533_01240 T30533_01100 T30533_01110]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:T30533_00130 T30533_01240 T30533_01100 T30533_01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00095 C5 isoprenoid biosynthesis, mevalonate pathway [PATH:T30533_00900 T30533_01100 T30533_01110]
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:T30533_00900 T30533_01100 T30533_01110]

Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
M00793 dTDP-L-rhamnose biosynthesis [PATH:T30533_00521 T30533_00523 T30533_00541 T30533_01250 T30533_01100 T30533_01110]

Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity