KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:dcr00010 dcr01200 dcr01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:dcr00010 dcr01200 dcr01230 dcr01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dcr00010 dcr00020 dcr01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dcr00010 dcr00020 dcr00620 dcr00785 dcr01200 dcr01210 dcr01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dcr00020 dcr01200 dcr01210 dcr01230 dcr01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:dcr00030 dcr01200 dcr01100]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:dcr00030 dcr01200 dcr01100]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:dcr00030 dcr01200 dcr01230 dcr01100]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:dcr00030 dcr00230 dcr01200 dcr01230 dcr01100]

Other carbohydrate metabolism
M00081 Pectin degradation [PATH:dcr00040 dcr01100]
M00114 Ascorbate biosynthesis, plants, fructose-6P => ascorbate [PATH:dcr00051 dcr00053 dcr01240 dcr01100 dcr01110]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:dcr00500 dcr01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:dcr00520 dcr01250 dcr01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH:dcr00520 dcr01250 dcr01100]
M00012 Glyoxylate cycle [PATH:dcr00630 dcr01200 dcr01100 dcr01110]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH:dcr00562 dcr01100]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:dcr00620 dcr00710 dcr01200 dcr01100]
M00169 CAM (Crassulacean acid metabolism), light [PATH:dcr00620 dcr00710 dcr01200 dcr01100]
M00171 C4-dicarboxylic acid cycle, NAD - malic enzyme type [PATH:dcr00710 dcr01200 dcr01100]
M00170 C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:dcr00710 dcr01200 dcr01100]

Methane metabolism
Nitrogen metabolism
M00531 Assimilatory nitrate reduction, nitrate => ammonia [PATH:dcr00910 dcr01100]

Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:dcr00920 dcr01100]

Photosynthesis
ATP synthesis
M00142 NADH:ubiquinone oxidoreductase, mitochondria [PATH:dcr00190]
M00143 NADH dehydrogenase (ubiquinone) Fe-S protein/flavoprotein complex, mitochondria [PATH:dcr00190]
M00151 Cytochrome bc1 complex respiratory unit [PATH:dcr00190]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:dcr00061 dcr01212 dcr01100]
M00083 Fatty acid biosynthesis, elongation [PATH:dcr00061 dcr01212 dcr01100]
M00415 Fatty acid elongation in endoplasmic reticulum [PATH:dcr00062 dcr01040 dcr01212 dcr01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:dcr00061 dcr00071 dcr01212 dcr01100]
M00087 beta-Oxidation [PATH:dcr00071 dcr01212 dcr01100]

Sterol biosynthesis
M00917 Phytosterol biosynthesis, squalene 2,3-epoxide => campesterol/sitosterol [PATH:dcr00100 dcr01100 dcr01110]

Lipid metabolism
M00089 Triacylglycerol biosynthesis [PATH:dcr00561 dcr01100]
M00098 Acylglycerol degradation [PATH:dcr00561 dcr01100]
M00092 Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:dcr00564 dcr01100]
M00100 Sphingosine degradation [PATH:dcr00600 dcr01100]
M00113 Jasmonic acid biosynthesis [PATH:dcr00592 dcr01100 dcr01110]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:dcr00230 dcr01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:dcr00230 dcr01232 dcr01240 dcr01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:dcr00230 dcr01232 dcr01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:dcr00230 dcr00240 dcr01232 dcr01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:dcr00240 dcr01232 dcr01240 dcr01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:dcr00240 dcr01232 dcr01100]
M00046 Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:dcr00240 dcr00410 dcr00770 dcr01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:dcr00260 dcr01200 dcr01230 dcr01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:dcr00260 dcr01230 dcr01100 dcr01110]
M00621 Glycine cleavage system [PATH:dcr00260 dcr00630 dcr00785 dcr01200 dcr01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:dcr00260 dcr01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:dcr00270 dcr00920 dcr01200 dcr01230 dcr01100 dcr01110]
M00034 Methionine salvage pathway [PATH:dcr00270 dcr01100]
M00368 Ethylene biosynthesis, methionine => ethylene [PATH:dcr00270 dcr01100 dcr01110]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:dcr00290 dcr00770 dcr01210 dcr01230 dcr01100 dcr01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:dcr00290 dcr01230 dcr01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:dcr00290 dcr01210 dcr01230 dcr01100 dcr01110]
M00036 Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:dcr00280 dcr01100]

Lysine metabolism
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:dcr00300 dcr01230 dcr01100 dcr01110]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:dcr00220 dcr01210 dcr01230 dcr01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:dcr00220 dcr01230 dcr01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:dcr00330 dcr01230 dcr01100]
M00970 Proline degradation, proline => glutamate [PATH:dcr00330 dcr01100]
M00972 Proline metabolism [PATH:dcr00330 dcr01100]

Polyamine biosynthesis
Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:dcr00340 dcr01230 dcr01100 dcr01110]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:dcr00400 dcr01230 dcr01100 dcr01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:dcr00400 dcr01230 dcr01100 dcr01110]
M00910 Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH:dcr00400 dcr01230 dcr01100 dcr01110]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:dcr00400 dcr01230 dcr01100 dcr01110]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH:dcr00350 dcr01100]

Other amino acid metabolism
M00027 GABA (gamma-Aminobutyrate) shunt [PATH:dcr00250 dcr00650 dcr01100]
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:dcr00480 dcr01240 dcr01100]

Glycan metabolism
Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH:dcr00510 dcr01100]
M00073 N-glycan precursor trimming [PATH:dcr00510 dcr01100]

Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:dcr00730 dcr01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:dcr00740 dcr01240 dcr01100 dcr01110]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:dcr00750 dcr01240 dcr01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:dcr00760 dcr01240 dcr01100]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:dcr00770 dcr01240 dcr01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:dcr00780 dcr01240 dcr01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:dcr00785 dcr01240 dcr01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:dcr00785 dcr01240 dcr01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:dcr00790 dcr00670 dcr01240 dcr01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:dcr00790 dcr01240 dcr01100]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:dcr00860 dcr01240 dcr01100 dcr01110]
M00932 Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH:dcr00130 dcr01240 dcr01100 dcr01110]
M00112 Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH:dcr00130 dcr01240 dcr01100 dcr01110]
M00933 Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol [PATH:dcr00130 dcr01240 dcr01100 dcr01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00095 C5 isoprenoid biosynthesis, mevalonate pathway [PATH:dcr00900 dcr01100 dcr01110]
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:dcr00900 dcr01100 dcr01110]
M00366 C10-C20 isoprenoid biosynthesis, plants [PATH:dcr00900 dcr01100 dcr01110]

Plant terpenoid biosynthesis
M00097 beta-Carotene biosynthesis, GGAP => beta-carotene [PATH:dcr00906 dcr01100 dcr01110]
M00372 Abscisic acid biosynthesis, beta-carotene => abscisic acid [PATH:dcr00906 dcr01100 dcr01110]
M00371 Castasterone biosynthesis, campesterol => castasterone [PATH:dcr00905 dcr01100 dcr01110]
M00927 Gibberellin A12 biosynthesis, GAPP => GA12 [PATH:dcr00904 dcr01100 dcr01110]
M00928 Gibberellin A4/A1 biosynthesis, GA12/GA53 => GA4/GA1 [PATH:dcr00904 dcr01100 dcr01110]

Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
M00039 Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:dcr00940 dcr01100 dcr01110]
M00137 Flavanone biosynthesis, phenylalanine => naringenin [PATH:dcr00940 dcr00941 dcr01100 dcr01110]
M00138 Flavonoid biosynthesis, naringenin => pelargonidin [PATH:dcr00941 dcr01100 dcr01110]

Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation