KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: pco00010 pco01200 pco01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: pco00010 pco01200 pco01230 pco01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: pco00010 pco00020 pco01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: pco00010 pco00020 pco00620 pco00785 pco01200 pco01210 pco01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: pco00020 pco01200 pco01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: pco00020 pco01200 pco01210 pco01230 pco01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: pco00020 pco01200 pco01210 pco01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: pco00030 pco01200 pco01100]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: pco00030 pco01200 pco01100]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: pco00030 pco01200 pco01230 pco01100]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: pco00030 pco00230 pco01200 pco01230 pco01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: pco00030 pco01200 pco01100]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: pco00040 pco01100]
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH: pco00040 pco00030 pco01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH: pco00040 pco00030 pco01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: pco00052 pco01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH: pco00052 pco01100]
M00129 Ascorbate biosynthesis, animals, glucose-1P => ascorbate [PATH: pco00040 pco00053 pco01240 pco01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: pco00500 pco01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: pco00500 pco01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: pco00520 pco01250 pco01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH: pco00520 pco00052 pco01250 pco01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH: pco00520 pco01250 pco01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH: pco00520 pco01250 pco01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH: pco00520 pco01100]
M00012 Glyoxylate cycle [PATH: pco00630 pco01200 pco01100 pco01110]
M00373 Ethylmalonyl pathway [PATH: pco00630 pco01200 pco01100]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH: pco00280 pco00630 pco00640 pco01200 pco01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: pco00562 pco01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: pco00562 pco01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH: pco00562 pco01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
M00597 Anoxygenic photosystem II
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH: pco00190]
M00142 NADH:ubiquinone oxidoreductase, mitochondria [PATH: pco00190]
M00143 NADH dehydrogenase (ubiquinone) Fe-S protein/flavoprotein complex, mitochondria [PATH: pco00190]
M00146 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex [PATH: pco00190]
M00147 NADH dehydrogenase (ubiquinone) 1 beta subcomplex [PATH: pco00190]
M00149 Succinate dehydrogenase, prokaryotes [PATH: pco00190]
M00150 Fumarate reductase, prokaryotes [PATH: pco00190]
M00148 Succinate dehydrogenase (ubiquinone) [PATH: pco00190]
M00151 Cytochrome bc1 complex respiratory unit [PATH: pco00190]
M00152 Cytochrome bc1 complex [PATH: pco00190]
M00154 Cytochrome c oxidase [PATH: pco00190]
M00155 Cytochrome c oxidase, prokaryotes [PATH: pco00190]
M00153 Cytochrome bd ubiquinol oxidase [PATH: pco00190]
M00417 Cytochrome o ubiquinol oxidase [PATH: pco00190]
M00156 Cytochrome c oxidase, cbb3-type [PATH: pco00190]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH: pco00190]
M00158 F-type ATPase, eukaryotes [PATH: pco00190]
M00160 V-type ATPase, eukaryotes [PATH: pco00190]
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
M00101 Cholesterol biosynthesis, squalene 2,3-epoxide => cholesterol [PATH: pco00100 pco01100]
M00103 Cholecalciferol biosynthesis [PATH: pco00100 pco01100]
M00106 Conjugated bile acid biosynthesis, cholate => taurocholate/glycocholate [PATH: pco01100]
M00862 beta-Oxidation, peroxisome, tri/dihydroxycholestanoyl-CoA => choloyl/chenodeoxycholoyl-CoA [PATH: pco01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH: pco01100]
M00108 C21-Steroid hormone biosynthesis, progesterone => corticosterone/aldosterone [PATH: pco01100]
M00109 C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH: pco01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH: pco01100]
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH: pco00300 pco01230 pco01100]
M00526 Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine [PATH: pco00300 pco01230 pco01100]
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH: pco00300 pco01230 pco01100 pco01110]
M00030 Lysine biosynthesis, AAA pathway, 2-oxoglutarate => 2-aminoadipate => lysine [PATH: pco00300 pco01230 pco01100]
M00433 Lysine biosynthesis, 2-oxoglutarate => 2-oxoadipate [PATH: pco00300 pco01210 pco01230 pco01100]
M00032 Lysine degradation, lysine => saccharopine => acetoacetyl-CoA [PATH: pco00310 pco01210 pco01100]
M00957 Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA [PATH: pco00310 pco01100]
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: pco00400 pco01230 pco01100 pco01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: pco00400 pco01230 pco01100 pco01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH: pco00400 pco01230 pco01100 pco01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH: pco00400 pco01230 pco01100]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH: pco00400 pco01230 pco01100 pco01110]
M00042 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline [PATH: pco00350 pco01100]
M00043 Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH: pco00350 pco01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH: pco00350 pco01100]
M00037 Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH: pco00380 pco01100]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH: pco00380 pco01100]
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH: pco00510 pco01100]
M00072 N-glycosylation by oligosaccharyltransferase [PATH: pco00510 pco00513 pco01100]
M00073 N-glycan precursor trimming [PATH: pco00510 pco01100]
M00075 N-glycan biosynthesis, complex type [PATH: pco00510 pco01100]
M00056 O-glycan biosynthesis, mucin type core [PATH: pco01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH: pco00515 pco01100]
M00065 GPI-anchor biosynthesis, core oligosaccharide [PATH: pco00563 pco01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH: pco01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH: pco01100]
M00068 Glycosphingolipid biosynthesis, globo-series, LacCer => Gb4Cer [PATH: pco00603 pco01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH: pco00604 pco01100]
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH: pco00730 pco01240 pco01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH: pco00730 pco01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH: pco00740 pco01240 pco01100 pco01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH: pco00750 pco01240 pco01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH: pco00750 pco01240 pco01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH: pco00760 pco01240 pco01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH: pco00380 pco00760 pco01240 pco01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: pco00770 pco01240 pco01100 pco01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: pco00770 pco01240 pco01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH: pco00780 pco01240 pco01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: pco00780 pco01240 pco01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH: pco00785 pco01240 pco01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH: pco00785 pco01240 pco01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH: pco00785 pco01240 pco01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH: pco00790 pco00670 pco01240 pco01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH: pco00790 pco01240 pco01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH: pco00790 pco01240 pco01100]
M00140 C1-unit interconversion, prokaryotes [PATH: pco00670 pco01240 pco01100]
M00141 C1-unit interconversion, eukaryotes [PATH: pco00670 pco01240 pco01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH: pco00860 pco01240 pco01100 pco01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH: pco00860 pco01240 pco01100 pco01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH: pco00860 pco01240 pco01100 pco01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH: pco00860 pco01240 pco01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH: pco00130 pco01240 pco01100 pco01110]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH: pco00130 pco01240 pco01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH: pco00130 pco01240 pco01100 pco01110]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Aromatics degradation
M00551 Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:pco01100]
M00568 Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:pco01100]
M00638 Salicylate degradation, salicylate => gentisate [PATH:pco01100]
Signature modules
Gene set
Pathogenicity
Drug resistance
M00745 Imipenem resistance, repression of porin OprD
M00639 Multidrug resistance, efflux pump MexCD-OprJ
M00641 Multidrug resistance, efflux pump MexEF-OprN
M00642 Multidrug resistance, efflux pump MexJK-OprM
M00698 Multidrug resistance, efflux pump BpeEF-OprC
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation
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