KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: pmu00010 pmu01200 pmu01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: pmu00010 pmu01200 pmu01230 pmu01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: pmu00010 pmu00020 pmu01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: pmu00010 pmu00020 pmu00620 pmu00785 pmu01200 pmu01210 pmu01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: pmu00020 pmu01200 pmu01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: pmu00020 pmu01200 pmu01210 pmu01230 pmu01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: pmu00020 pmu01200 pmu01210 pmu01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: pmu00030 pmu01200 pmu01100 pmu01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: pmu00030 pmu01200 pmu01100 pmu01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: pmu00030 pmu01200 pmu01230 pmu01100 pmu01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH: pmu00030 pmu01200 pmu01230 pmu01100 pmu01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: pmu00030 pmu00230 pmu01200 pmu01230 pmu01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: pmu00030 pmu01200 pmu01100 pmu01120]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: pmu00040 pmu01100]
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH: pmu00040 pmu00030 pmu01100]
M00081 Pectin degradation [PATH: pmu00040 pmu01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: pmu00052 pmu01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH: pmu00052 pmu01100]
M00129 Ascorbate biosynthesis, animals, glucose-1P => ascorbate [PATH: pmu00040 pmu00053 pmu01240 pmu01100]
M00114 Ascorbate biosynthesis, plants, fructose-6P => ascorbate [PATH: pmu00051 pmu00053 pmu01240 pmu01100 pmu01110]
M00550 Ascorbate degradation, ascorbate => D-xylulose-5P [PATH: pmu00053 pmu01100 pmu01120]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: pmu00500 pmu01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: pmu00500 pmu01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: pmu00520 pmu01250 pmu01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH: pmu00520 pmu00052 pmu01250 pmu01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH: pmu00520 pmu01250 pmu01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH: pmu00520 pmu01250 pmu01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH: pmu00520 pmu01100]
M00012 Glyoxylate cycle [PATH: pmu00630 pmu01200 pmu01100 pmu01110]
M00532 Photorespiration [PATH: pmu00630 pmu01200 pmu01100 pmu01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH: pmu00280 pmu00630 pmu00640 pmu01200 pmu01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: pmu00562 pmu01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: pmu00562 pmu01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH: pmu00562 pmu01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH: pmu00190 pmu01100]
M00145 NAD(P)H:quinone oxidoreductase, chloroplasts and cyanobacteria [PATH: pmu00190 pmu01100]
M00142 NADH:ubiquinone oxidoreductase, mitochondria [PATH: pmu00190 pmu01100]
M00143 NADH dehydrogenase (ubiquinone) Fe-S protein/flavoprotein complex, mitochondria [PATH: pmu00190 pmu01100]
M00146 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex [PATH: pmu00190 pmu01100]
M00147 NADH dehydrogenase (ubiquinone) 1 beta subcomplex [PATH: pmu00190 pmu01100]
M00149 Succinate dehydrogenase, prokaryotes [PATH: pmu00190 pmu01100]
M00150 Fumarate reductase, prokaryotes [PATH: pmu00190 pmu01100]
M00148 Succinate dehydrogenase (ubiquinone) [PATH: pmu00190 pmu01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH: pmu00190 pmu01100]
M00152 Cytochrome bc1 complex [PATH: pmu00190 pmu01100]
M00154 Cytochrome c oxidase [PATH: pmu00190 pmu01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH: pmu00190 pmu01100]
M00153 Cytochrome bd ubiquinol oxidase [PATH: pmu00190]
M00417 Cytochrome o ubiquinol oxidase [PATH: pmu00190 pmu01100]
M00156 Cytochrome c oxidase, cbb3-type [PATH: pmu00190 pmu01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH: pmu00190 pmu01100]
M00158 F-type ATPase, eukaryotes [PATH: pmu00190 pmu01100]
M00160 V-type ATPase, eukaryotes [PATH: pmu00190 pmu01100]
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
M00101 Cholesterol biosynthesis, FPP => cholesterol [PATH: pmu01100]
M00917 Phytosterol biosynthesis, squalene 2,3-epoxide => campesterol/sitosterol [PATH: pmu01100 pmu01110]
M00103 Cholecalciferol biosynthesis [PATH: pmu01100]
M00862 beta-Oxidation, peroxisome, tri/dihydroxycholestanoyl-CoA => choloyl/chenodeoxycholoyl-CoA [PATH: pmu01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH: pmu01100]
M00109 C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH: pmu01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH: pmu01100]
M00976 C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH: pmu01100]
M00977 C19-Steroid hormone biosynthesis (androgen backdoor pathway), pregnenolone => androsterone => dihydrotestosterone [PATH: pmu01100]
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: pmu00400 pmu01230 pmu01100 pmu01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: pmu00400 pmu01230 pmu01100 pmu01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH: pmu00400 pmu01230 pmu01100 pmu01110]
M00910 Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH: pmu00400 pmu01230 pmu01100 pmu01110]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH: pmu00400 pmu01230 pmu01100 pmu01110]
M00042 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline [PATH: pmu00350 pmu01100]
M00043 Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH: pmu00350 pmu01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH: pmu00350 pmu01100]
M00533 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH: pmu00350 pmu01220 pmu01100 pmu01120]
M00037 Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH: pmu00380 pmu01100]
M00936 Melatonin biosynthesis, plants, tryptophan => serotonin => melatonin [PATH: pmu00380 pmu01100 pmu01110]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH: pmu00380 pmu01100]
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH: pmu01100]
M00073 N-glycan precursor trimming [PATH: pmu01100]
M00075 N-glycan biosynthesis, complex type [PATH: pmu01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH: pmu01100]
M00065 GPI-anchor biosynthesis, core oligosaccharide [PATH: pmu01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH: pmu01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH: pmu01100]
M00068 Glycosphingolipid biosynthesis, globo-series, LacCer => Gb4Cer [PATH: pmu01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH: pmu01100]
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:pmu00730 pmu01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pmu00740 pmu01240 pmu01100 pmu01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pmu00750 pmu01240 pmu01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:pmu00750 pmu01240 pmu01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pmu00760 pmu01240 pmu01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH:pmu00380 pmu00760 pmu01240 pmu01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:pmu00770 pmu01240 pmu01100 pmu01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:pmu00770 pmu01240 pmu01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pmu00780 pmu01240 pmu01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pmu00780 pmu01240 pmu01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pmu00785 pmu01240 pmu01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:pmu00785 pmu01240 pmu01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:pmu00785 pmu01240 pmu01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:pmu00790 pmu00670 pmu01240 pmu01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH:pmu00790 pmu01240 pmu01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pmu00790 pmu01240 pmu01100]
M00140 C1-unit interconversion, prokaryotes [PATH:pmu00670 pmu01240 pmu01100]
M00141 C1-unit interconversion, eukaryotes [PATH:pmu00670 pmu01240 pmu01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pmu00860 pmu01240 pmu01100 pmu01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH:pmu00860 pmu01240 pmu01100 pmu01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pmu00860 pmu01240 pmu01100 pmu01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pmu00860 pmu01240 pmu01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pmu00130 pmu01240 pmu01100 pmu01110]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH:pmu00130 pmu01240 pmu01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:pmu00130 pmu01240 pmu01100 pmu01110]
M00932 Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH:pmu00130 pmu01240 pmu01100 pmu01110]
M00112 Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH:pmu00130 pmu01240 pmu01100 pmu01110]
M00933 Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol [PATH:pmu00130 pmu01240 pmu01100 pmu01110]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00745 Imipenem resistance, repression of porin OprD
M00718 Multidrug resistance, efflux pump MexAB-OprM
M00639 Multidrug resistance, efflux pump MexCD-OprJ
M00641 Multidrug resistance, efflux pump MexEF-OprN
M00642 Multidrug resistance, efflux pump MexJK-OprM
Plant pathogenicity
Symbiosis
Module set
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