KEGG   Photobacterium profundum

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KEGG Modules

Pathway module Structural complex
    Energy metabolism Genetic information processing
      DNA polymerase Replication system
      Repair system
      RNA polymerase
        M00183 RNA polymerase, bacteria [BR:ko03021 ko03400] [PATH:ppr03020]
      Spliceosome
      RNA processing Ribosome Proteasome
      Ubiquitin system
      Protein processing
    Environmental information processing
      Mineral and organic ion transport system
        M00185 Sulfate transport system [BR:ko02000] [PATH:ppr02010]
        M00189 Molybdate transport system [BR:ko02000] [PATH:ppr02010]
        M00186 Tungstate transport system [BR:ko02000] [PATH:ppr02010]
        M00188 NitT/TauT family transport system [BR:ko02000]
        M00435 Taurine transport system [BR:ko02000] [PATH:ppr02010]
        M00436 Sulfonate transport system [BR:ko02000] [PATH:ppr02010]
        M00190 Iron(III) transport system [BR:ko02000] [PATH:ppr02010]
        M00191 Thiamine transport system [BR:ko02000] [PATH:ppr02010]
        M00299 Spermidine/putrescine transport system [BR:ko02000] [PATH:ppr02010]
        M00300 Putrescine transport system [BR:ko02000] [PATH:ppr02010]
        M00193 Putative spermidine/putrescine transport system [BR:ko02000]
        M00208 Glycine betaine/proline transport system [BR:ko02000] [PATH:ppr02010]
        M00209 Osmoprotectant transport system [BR:ko02000] [PATH:ppr02010]
        M00442 Putative hydroxymethylpyrimidine transport system [BR:ko02000] [PATH:ppr02010]
        M00192 Putative thiamine transport system [BR:ko02000]
      Saccharide, polyol, and lipid transport system
        M00194 Maltose/maltodextrin transport system [BR:ko02000] [PATH:ppr02010]
        M00201 alpha-Glucoside transport system [BR:ko02000] [PATH:ppr02010]
        M00605 Glucose/mannose transport system [BR:ko02000] [PATH:ppr02010]
        M00214 Methyl-galactoside transport system [BR:ko02000] [PATH:ppr02010]
        M00215 D-Xylose transport system [BR:ko02000] [PATH:ppr02010]
        M00212 Ribose transport system [BR:ko02000] [PATH:ppr02010]
        M00593 Inositol transport system [BR:ko02000] [PATH:ppr02010]
        M00607 Glycerol transport system [BR:ko02000] [PATH:ppr02010]
        M00200 Putative sorbitol/mannitol transport system [BR:ko02000] [PATH:ppr02010]
        M00669 gamma-Hexachlorocyclohexane transport system [BR:ko02000]
        M00210 Phospholipid transport system [BR:ko02000] [PATH:ppr02010]
        M00491 arabinogalactan oligomer/maltooligosaccharide transport system [BR:ko02000] [PATH:ppr02010]
        M00221 Putative simple sugar transport system [BR:ko02000]
        M00211 Putative ABC transport system [BR:ko02000]
      Phosphate and amino acid transport system
        M00222 Phosphate transport system [BR:ko02000] [PATH:ppr02010]
        M00223 Phosphonate transport system [BR:ko02000] [PATH:ppr02010]
        M00226 Histidine transport system [BR:ko02000] [PATH:ppr02010]
        M00227 Glutamine transport system [BR:ko02000] [PATH:ppr02010]
        M00229 Arginine transport system [BR:ko02000] [PATH:ppr02010]
        M00230 Glutamate/aspartate transport system [BR:ko02000] [PATH:ppr02010]
        M00232 General L-amino acid transport system [BR:ko02000] [PATH:ppr02010]
        M00234 Cystine transport system [BR:ko02000] [PATH:ppr02010]
        M00235 Arginine/ornithine transport system [BR:ko02000] [PATH:ppr02010]
        M00863 Putative lysine/arginine/ornithine/histidine/octopine transport system [BR:ko02000] [PATH:ppr02010]
        M00237 Branched-chain amino acid transport system [BR:ko02000] [PATH:ppr02010]
        M00323 Urea transport system [BR:ko02000] [PATH:ppr02010]
        M00238 D-Methionine transport system [BR:ko02000] [PATH:ppr02010]
        M00586 Putative S-methylcysteine transport system [BR:ko02000] [PATH:ppr02010]
        M00236 Putative polar amino acid transport system [BR:ko02000]
      Peptide and nickel transport system Metallic cation, iron-siderophore and vitamin B12 transport system
        M00240 Iron complex transport system [BR:ko02000] [PATH:ppr02010]
        M00241 Vitamin B12 transport system [BR:ko02000] [PATH:ppr02010]
        M00242 Zinc transport system [BR:ko02000] [PATH:ppr02010]
        M00245 Cobalt/nickel transport system [BR:ko02000] [PATH:ppr02010]
        M00246 Nickel transport system [BR:ko02000] [PATH:ppr02010]
        M00581 Biotin transport system [BR:ko02000] [PATH:ppr02010]
        M00582 Energy-coupling factor transport system [BR:ko02000] [PATH:ppr02010]
        M00244 Putative zinc/manganese transport system [BR:ko02000]
        M00247 Putative ABC transport system [BR:ko02000]
      ABC-2 type and other transport systems
        M00249 Capsular polysaccharide transport system [BR:ko02000] [PATH:ppr02010]
        M00250 Lipopolysaccharide transport system [BR:ko02000] [PATH:ppr02010]
        M00320 Lipopolysaccharide export system [BR:ko02000] [PATH:ppr02010]
        M00762 Copper-processing system [BR:ko02000] [PATH:ppr02010]
        M00255 Lipoprotein-releasing system [BR:ko02000] [PATH:ppr02010]
        M00259 Heme transport system [BR:ko02000] [PATH:ppr02010]
        M00256 Cell division transport system [BR:ko02000] [PATH:ppr02010]
        M00258 Putative ABC transport system [BR:ko02000]
        M00254 ABC-2 type transport system [BR:ko02000]
      Drug efflux transporter/pump
        M00821 Multidrug resistance, efflux pump TriABC-TolC
        M00822 Multidrug resistance, efflux pump MexMN-OprM
        M00707 Multidrug resistance, SmdAB/MdlAB transporter
      Phosphotransferase system (PTS) Bacterial secretion system
        M00326 RTX toxin transport system [BR:ko02044]
        M00328 Hemophore/metalloprotease transport system [BR:ko02044]
        M00330 Adhesin protein transport system [BR:ko02044]
        M00331 Type II general secretion system [BR:ko02044] [PATH:ppr03070]
        M00334 Type VI secretion system [BR:ko02044] [PATH:ppr03070]
        M00335 Sec (secretion) system [BR:ko02044] [PATH:ppr03070]
        M00336 Twin-arginine translocation (Tat) system [BR:ko02044] [PATH:ppr03070]
Functional set
    Metabolism
      Aminoacyl tRNA Nucleotide sugar
    Environmental information processing
      Two-component regulatory system
        M00434 PhoR-PhoB (phosphate starvation response) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00444 PhoQ-PhoP (magnesium transport) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00445 EnvZ-OmpR (osmotic stress response) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00446 RstB-RstA two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00447 CpxA-CpxR (envelope stress response) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00449 CreC-CreB (phosphate regulation) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00452 CusS-CusR (copper tolerance) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00453 QseC-QseB (quorum sensing) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00454 KdpD-KdpE (potassium transport) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00455 TorS-TorR (TMAO respiration) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00456 ArcB-ArcA (anoxic redox control) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00457 TctE-TctD (tricarboxylic acid transport) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00472 NarQ-NarP (nitrate respiration) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00473 UhpB-UhpA (hexose phosphates uptake) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00475 BarA-UvrY (central carbon metabolism) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00477 EvgS-EvgA (acid and drug tolerance) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00486 CitA-CitB (citrate fermentation) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00497 GlnL-GlnG (nitrogen regulation) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00498 NtrY-NtrX (nitrogen regulation) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00503 PgtB-PgtA (phosphoglycerate transport) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00504 DctB-DctD (C4-dicarboxylate transport) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00505 KinB-AlgB (alginate production) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00509 WspE-WspRF (chemosensory) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00514 TtrS-TtrR (tetrathionate respiration) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00515 FlrB-FlrC (polar flagellar synthesis) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00523 RegB-RegA (redox response) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00653 AauS-AauR (acidic amino acids utilization) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00654 ParS-ParR (polymyxin-adaptive resistance) two-component regulatory system [BR:ko02022] [PATH:ppr01501 ppr02020]
        M00770 PfeS-PfeR (enterobactin-dependent iron acquisition) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00771 FitF-FitH (insecticidal toxin regulation) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00818 FusK-FusR (virulence regulation) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
        M00820 SagS-HptB-HsbR (swarming activity and biofilm formation) two-component regulatory system [BR:ko02022] [PATH:ppr02020]
      Drug efflux transporter/pump
        M00709 Macrolide resistance, MacAB-TolC transporter
        M00647 Multidrug resistance, efflux pump AcrAB-TolC/SmeDEF
      Drug resistance
        M00628 beta-Lactam resistance, AmpC system [PATH:ppr01501]
        M00742 Aminoglycoside resistance, protease FtsH
        M00743 Aminoglycoside resistance, protease HtpX
        M00729 Fluoroquinolone resistance, gyrase-protecting protein Qnr
        M00721 Cationic antimicrobial peptide (CAMP) resistance, arnBCADTEF operon [PATH:ppr01503]
        M00727 Cationic antimicrobial peptide (CAMP) resistance, N-acetylmuramoyl-L-alanine amidase AmiA and AmiC [PATH:ppr01503]
        M00728 Cationic antimicrobial peptide (CAMP) resistance, envelope protein folding and degrading factors DegP and DsbA [PATH:ppr01503]
    Cell signaling
Signature module
    Gene set
      Pathogenicity
      Drug resistance
        M00745 Imipenem resistance, repression of porin OprD
        M00641 Multidrug resistance, efflux pump MexEF-OprN
        M00642 Multidrug resistance, efflux pump MexJK-OprM
      Plant pathogenicity
      Symbiosis
    Module set
      Metabolic capacity
        M00616 Sulfate-sulfur assimilation