KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: pps00010 pps01200 pps01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: pps00010 pps01200 pps01230 pps01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: pps00010 pps00020 pps01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: pps00010 pps00020 pps00620 pps00785 pps01200 pps01210 pps01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: pps00020 pps01200 pps01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: pps00020 pps01200 pps01210 pps01230 pps01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: pps00020 pps01200 pps01210 pps01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: pps00030 pps01200 pps01100]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: pps00030 pps01200 pps01100]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: pps00030 pps01200 pps01230 pps01100]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: pps00030 pps00230 pps01200 pps01230 pps01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: pps00030 pps01200 pps01100]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: pps00040 pps01100]
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH: pps00040 pps00030 pps01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: pps00052 pps01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH: pps00052 pps01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: pps00500 pps01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: pps00500 pps01100]
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH: pps00500 pps01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: pps00520 pps01250 pps01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH: pps00520 pps00052 pps01250 pps01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH: pps00520 pps01250 pps01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH: pps00520 pps01250 pps01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH: pps00520 pps01100]
M00012 Glyoxylate cycle [PATH: pps00630 pps01200 pps01100]
M00373 Ethylmalonyl pathway [PATH: pps00630 pps01200 pps01100]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH: pps00280 pps00630 pps00640 pps01200 pps01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: pps00562 pps01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: pps00562 pps01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH: pps00562 pps01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
M00101 Cholesterol biosynthesis, FPP => cholesterol [PATH: pps00100 pps01100]
M00102 Ergocalciferol biosynthesis, FPP => ergosterol/ergocalciferol [PATH: pps00100 pps01100]
M00103 Cholecalciferol biosynthesis [PATH: pps00100 pps01100]
M00104 Bile acid biosynthesis, cholesterol => cholate/chenodeoxycholate [PATH: pps00120 pps01100]
M00106 Conjugated bile acid biosynthesis, cholate => taurocholate/glycocholate [PATH: pps00120 pps01100]
M00862 beta-Oxidation, peroxisome, tri/dihydroxycholestanoyl-CoA => choloyl/chenodeoxycholoyl-CoA [PATH: pps00120 pps01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH: pps00140 pps01100]
M00108 C21-Steroid hormone biosynthesis, progesterone => corticosterone/aldosterone [PATH: pps00140 pps01100]
M00109 C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH: pps00140 pps01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH: pps00140 pps01100]
M00976 C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH: pps00140 pps01100]
M00977 C19-Steroid hormone biosynthesis (androgen backdoor pathway), pregnenolone => androsterone => dihydrotestosterone [PATH: pps00140 pps01100]
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH: pps01230 pps01100]
M00525 Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine [PATH: pps01230 pps01100]
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH: pps01230 pps01100]
M00030 Lysine biosynthesis, AAA pathway, 2-oxoglutarate => 2-aminoadipate => lysine [PATH: pps01230 pps01100]
M00433 Lysine biosynthesis, 2-oxoglutarate => 2-oxoadipate [PATH: pps01210 pps01230 pps01100]
M00032 Lysine degradation, lysine => saccharopine => acetoacetyl-CoA [PATH: pps00310 pps01210 pps01100]
M00957 Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA [PATH: pps00310 pps01100]
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: pps00400 pps01230 pps01100]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: pps00400 pps01230 pps01100]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH: pps00400 pps01230 pps01100]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH: pps00400 pps01230 pps01100]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH: pps00400 pps01230 pps01100]
M00042 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline [PATH: pps00350 pps01100]
M00043 Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH: pps00350 pps01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH: pps00350 pps01100]
M00037 Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH: pps00380 pps01100]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH: pps00380 pps01100]
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH: pps00510 pps01100]
M00072 N-glycosylation by oligosaccharyltransferase [PATH: pps00510 pps00513 pps01100]
M00073 N-glycan precursor trimming [PATH: pps00510 pps01100]
M00075 N-glycan biosynthesis, complex type [PATH: pps00510 pps01100]
M00056 O-glycan biosynthesis, mucin type core [PATH: pps00512 pps01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH: pps00515 pps01100]
M00065 GPI-anchor biosynthesis, core oligosaccharide [PATH: pps00563 pps01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH: pps00601 pps01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH: pps00601 pps01100]
M00068 Glycosphingolipid biosynthesis, globo-series, LacCer => Gb4Cer [PATH: pps00603 pps01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH: pps00604 pps01100]
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:pps00730 pps01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pps00740 pps01240 pps01100]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pps00750 pps01240 pps01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:pps00750 pps01240 pps01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pps00760 pps01240 pps01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH:pps00380 pps00760 pps01240 pps01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:pps00770 pps01240 pps01100]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:pps00770 pps01240 pps01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pps00780 pps01240 pps01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pps00780 pps01240 pps01100]
M00950 Biotin biosynthesis, BioU pathway, pimeloyl-ACP/CoA => biotin [PATH:pps00780 pps01240 pps01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pps00785 pps01240 pps01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:pps00785 pps01240 pps01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:pps00785 pps01240 pps01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:pps00790 pps00670 pps01240 pps01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH:pps00790 pps01240 pps01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pps00790 pps01240 pps01100]
M00140 C1-unit interconversion, prokaryotes [PATH:pps00670 pps01240 pps01100]
M00141 C1-unit interconversion, eukaryotes [PATH:pps00670 pps01240 pps01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pps00860 pps01240 pps01100]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH:pps00860 pps01240 pps01100]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pps00860 pps01240 pps01100]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:pps00860 pps01240 pps01100]
M00925 Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH:pps00860 pps01240 pps01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pps00860 pps01240 pps01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pps00130 pps01240 pps01100]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH:pps00130 pps01240 pps01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:pps00130 pps01240 pps01100]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Aromatics degradation
M00551 Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:pps01100]
M00637 Anthranilate degradation, anthranilate => catechol [PATH:pps01100]
M00568 Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:pps01100]
M00545 Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA [PATH:pps00360 pps01100]
Signature modules
Gene set
Pathogenicity
Drug resistance
M00745 Imipenem resistance, repression of porin OprD
M00639 Multidrug resistance, efflux pump MexCD-OprJ
M00641 Multidrug resistance, efflux pump MexEF-OprN
M00642 Multidrug resistance, efflux pump MexJK-OprM
Plant pathogenicity
Symbiosis
Module set
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