| T number | T01015 |
| Org_code | osa |
| Name | Oryza sativa ssp. japonica cultivar Nipponbare (Japanese rice) |
| Category | Reference genome |
| Annotation | yes |
| Taxonomy | TAX: 39947 |
| Lineage | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa |
| Brite | KEGG organisms [BR:br08601]
KEGG organisms in the NCBI taxonomy [BR:br08610]
KEGG organisms in taxonomic ranks [BR:br08611]
KEGG organisms: plants [BR:br08613] |
| Data source | RefSeq (Assembly: GCF_001433935.1)
BioProject: 122 |
| Original DB | RAP-DB |
| Keywords | Photosynthesis |
| Statistics | Number of protein genes: 28073
Number of RNA genes: 71
|
| Created | 2003 |
| Reference | PMID: 16100779 |
| Authors | International Rice Genome Sequencing Project. |
| Title | The map-based sequence of the rice genome. |
| Journal | Nature 436:793-800 (2005)
DOI: 10.1038/nature03895 |
| Reference | PMID: 12447438 (chromosome 1) |
| Authors | Sasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, Cheng Z, Nagamura Y, et al. |
| Title | The genome sequence and structure of rice chromosome 1. |
| Journal | Nature 420:312-316 (2002)
DOI: 10.1038/nature01184 |
| Reference | PMID: 16109971 (chromosome 3) |
| Authors | Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, et al. |
| Title | Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. |
| Journal | Genome Res 15:1284-91 (2005)
DOI: 10.1101/gr.3869505 |
| Reference | PMID: 12447439 (chromosome 4) |
| Authors | Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, et al. |
| Title | Sequence and analysis of rice chromosome 4. |
| Journal | Nature 420:316-320 (2002)
DOI: 10.1038/nature01183 |
| Reference | PMID: 12791992 (chromosome 10) |
| Authors | Rice Chromosome 10 Sequencing Consortium. |
| Title | In-depth view of structure, activity, and evolution of rice chromosome 10. |
| Journal | Science 300:1566-9 (2003)
DOI: 10.1126/science.1083523 |
| Reference | PMID: 16188032 (chromosomes 11 and 12) |
| Authors | Rice Chromosomes 11 and 12 Sequencing Consortia. |
| Title | The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. |
| Journal | BMC Biol 3:20 (2005)
DOI: 10.1186/1741-7007-3-20 |
Oryza sativa japonica (Japanese rice) (RefSeq)