kegg3 logo  Map Coloring GUI

The graphical user interface (GUI) of the KEGG pathway map viewer (show_pathway tool) allows advanced coloring of map objects including split-coloring and gradation. The side panel of the pathway map viewer contains the Color tab. The plus (+) sign opens a small window for data input. This document describes how to prepare input data.

[ KEGG Mapper Color | Map Coloring GUI | Map Coloring URL ]

Direct coloring specification

Input data Example

Try data shown below in hsa00510.

data bgcolor fgcolor gene
1798
79868 pink
199857 ,blue
56052 yellow,blue
85365 pink yellow
440138 pink,blue yellow,green
-
pink
-
yellow
pink|yellow
pink|yellow
red
-
blue
blue
-
blue|green
ALG7
ALG13
ALG14
ALG1
ALG2
ALG11
ALG example 1
Note


Numerical values converted to color gradation

Input data Gradient color bar Example

Try either data shown below in hsa00510.

data1 data2 gene
1798 57
79868 26
199857 44
56052 18
85365 34 24
440138 3 23 40
1798 27
79868 -4
199857 14
56052 -12
85365 4 -6
440138 -27 -7 10
ALG7
ALG13
ALG14
ALG1
ALG2
ALG11
Default gradient color bar
color bar
(Min-Mid-Max mode)
ALG example 2


Last updated: November 1, 2022