Multiple Sequence Alignment by CLUSTALW
ETE3
MAFFT
CLUSTALW
PRRN
Help
General Setting Parameters:
Output Format
:
CLUSTAL
GCG(MSF)
GDE
PIR
Phylip
FASTA
Pairwise Alignment:
FAST/APPROXIMATE
SLOW/ACCURATE
Enter your
sequences
(with labels) below (copy & paste):
PROTEIN
DNA
Support Formats: FASTA (Pearson), NBRF/PIR, EMBL/Swiss Prot, GDE, CLUSTAL, and GCG/MSF
Or give the file name containing your query
More Detail Parameters...
Pairwise Alignment Parameters:
For FAST/APPROXIMATE:
K-tuple(word) size:
, Window size:
, Gap Penalty:
Number of Top Diagonals:
, Scoring Method:
PERCENT
ABSOLUTE
For SLOW/ACCURATE:
Gap Open Penalty:
, Gap Extension Penalty:
Select
Weight Matrix
:
BLOSUM (for PROTEIN)
PAM (for PROTEIN)
GONNET (for PROTEIN)
ID (for PROTEIN)
IUB (for DNA)
CLUSTALW (for DNA)
(Note that only parameters for the algorithm specified by the above "Pairwise Alignment" are valid.)
Multiple Alignment Parameters:
Gap Open Penalty:
, Gap Extension Penalty:
Weight Transition:
YES
(Value:
),
NO
Hydrophilic Residues for Proteins:
Hydrophilic Gaps:
YES
NO
Select
Weight Matrix
:
BLOSUM (for PROTEIN)
PAM (for PROTEIN)
GONNET (for PROTEIN)
ID (for PROTEIN)
IUB (for DNA)
CLUSTALW (for DNA)
Type
additional options
(delimited by whitespaces) below:
(
-options
for help)
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GenomeNet
Kyoto University Bioinformatics Center