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EGassembler

Aligns and merges sequence fragments resulting from shotgun sequencing or gene transcripts (EST) fragments in order to reconstruct the original segment or gene
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Sequence Cleaning Repeat Masking Vector Masking Organelle Masking Sequence Assembly


PROJECT NAME EMAIL ADDRESS

Query sequences

TEXT DATA , Please paste your sequences (FASTA format)
FILE UPLOAD(FASTA format)

Options

base quality cutoff for clipping N > 5
max gap length in any overlap N > 1
overlap length cutoff N > 20
overlap percent identity cutoff N > 65
overlap similarity score cutoff N > 400
clipping range N > 5
Home KEGG GenomeNet Kanehisa Laboratory

Reference:
Masoudi-Nejad A, Tonomura K, Kawashima S, Moriya Y, Suzuki M, Itoh M, Kanehisa M, Endo T, Goto S (2006)
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Res. 34:W459-462.