HGC icon

EGassembler

Aligns and merges sequence fragments resulting from shotgun sequencing or gene transcripts (EST) fragments in order to reconstruct the original segment or gene
Home One-Click Assembly Step-by-Step Assembly Stand-Alone Processing Help
Sequence Cleaning Repeat Masking Vector Masking Organelle Masking Sequence Assembly


PROJECT NAME EMAIL ADDRESS

Query sequences

TEXT DATA , Please paste your sequences (FASTA format)
FILE UPLOAD(FASTA format)

Options

number of CPUs
Minimum length of matching word(-minmatch)
Minimum alignment score(-minscore)
Maximum length of matching word(-maxmatch)
matching alignments(-alignment)
Level of masking for reporting a match(-masklevel)
  • 0 report only the single highest scoring match for each query
  • 100 report any match whose domain is not completely contained within a higher scoring match
  • 101 report all matches
Organelle Library
Using your custom organelle library
Using Plastids library
Using Mitochondria library
Home KEGG GenomeNet Kanehisa Laboratory

Reference:
Masoudi-Nejad A, Tonomura K, Kawashima S, Moriya Y, Suzuki M, Itoh M, Kanehisa M, Endo T, Goto S (2006)
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Res. 34:W459-462.