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EGassembler

Aligns and merges sequence fragments resulting from shotgun sequencing or gene transcripts (EST) fragments in order to reconstruct the original segment or gene
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PROJECT NAME EMAIL ADDRESS

Query sequences

TEXT DATA , Please paste your sequences (FASTA format)
FILE UPLOAD(FASTA format)

Enable Sequence Cleaning Process

Options

number of CPUs
minimum percent identity for an alignemnt with a contaminant
minimum length of a terminal vector hit to be considered(> 11 , default 11)
disable trimming of ends rich in Ns
disable trashing of low quality sequences
disable trimming of polyA/T tails
disable low-complexity screening (dust)
Home KEGG GenomeNet Kanehisa Laboratory

Reference:
Masoudi-Nejad A, Tonomura K, Kawashima S, Moriya Y, Suzuki M, Itoh M, Kanehisa M, Endo T, Goto S (2006)
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Res. 34:W459-462.