# OC Root 2nd 3rd 4th 5th 6th PC Gene/Definition OC.100480 Bacteria.363763 Proteobacteria.271955 Deltaproteobacteria.32464 - - gsb.374 gsb:GSUB_01970 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.271955 Deltaproteobacteria.32464 Pelobacter.2628 - pace.1224 pace:A6070_06450 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.271955 Deltaproteobacteria.32464 Pelobacter.4218 - pef.551 pef:A7E78_02815 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.271955 Deltaproteobacteria.32464 Desulfuromonas.855 - des.2609 des:DSOUD_2695 D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.271955 Deltaproteobacteria.32464 Desulfuromonas.855 - deu.2220 deu:DBW_2383 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 Anaeromyxobacter.1831 Anaeromyxobacter_dehalogenans.271 ade.2442 ade:Adeh_2449 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 Anaeromyxobacter.1831 Anaeromyxobacter_dehalogenans.271 acp.1493 acp:A2cp1_1506 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 Anaeromyxobacter.1831 Anaeromyxobacter_sp_.116 afw.1430 afw:Anae109_1418 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 Anaeromyxobacter.1831 Anaeromyxobacter_sp_.116 ank.1409 ank:AnaeK_1410 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 Myxococcus.4931 - mxa.3973 mxa:MXAN_4097 D-alanine-D-alanine ligase family protein; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 Myxococcus.4931 - mfu.5591 mfu:LILAB_28665 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 Myxococcus.4931 - msd.3765 msd:MYSTI_03827 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 Myxococcus.4931 - mym.2802 mym:A176_002800 D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 Myxococcus.4931 - mmas.3943 mmas:MYMAC_004020 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 - - ccx.3767 ccx:COCOR_03852 ddlA; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 - - sur.4409 sur:STAUR_4567 D-alanine-D-alanine ligase family protein; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 - - age.5887 age:AA314_06016 D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 - - mbd.6105 mbd:MEBOL_006356 D-alanine-D-alanine ligase/ATP-grasp enzymes-like protein; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 - - cfus.3827 cfus:CYFUS_003871 D-alanine-D-alanine ligase/ATP-grasp enzymes-like protein; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 - - vin.1473 vin:AKJ08_1488 D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 Sorangium.69 - scl.1065 scl:sce0890 ddlA2; D-alanine-D-alanine ligase / aminopeptidase OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 Sorangium.69 - scu.1425 scu:SCE1572_06240 hypothetical protein; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 - - ccro.2131 ccro:CMC5_019550 ddl; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.621547 Deltaproteobacteria.138665 - - samy.7948 samy:DB32_008649 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Proteobacteria.278066 Deltaproteobacteria.4197 - - mrm.5398 mrm:A7982_05342 D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Firmicutes.108551 Firmicutes___Clostridia.11433 Alkaliphilus.3007 - amt.2707 amt:Amet_2954 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Firmicutes.132371 Firmicutes___Clostridia.79637 Thermoclostridium.507 - css.1541 css:Cst_c16020 ddl1; D-alanine--D-alanine ligase Ddl; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Firmicutes.132371 Firmicutes___Clostridia.79637 Thermoclostridium.507 - csd.1465 csd:Clst_1548 Ala-Ala ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Firmicutes.132371 Firmicutes___Clostridia.79637 - - cthd.3341 cthd:CDO33_18480 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Firmicutes.132371 Firmicutes___Clostridia.79637 Lachnoclostridium.8065 - cpy.1618 cpy:Cphy_1644 D-alanine--D-alanine ligase domain protein; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Firmicutes.132371 Firmicutes___Clostridia.79637 - - ova.1286 ova:OBV_12610 putative D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Firmicutes.108551 Firmicutes___Clostridia.11433 Tepidanaerobacter.351 - tep.120 tep:TepRe1_0119 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Firmicutes.108551 Firmicutes___Clostridia.11433 Tepidanaerobacter.351 - tae.132 tae:TepiRe1_0127 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalococcoides.428 Dehalococcoides_mccartyi.1870 - det.627 det:DET0629 D-ala D-ala ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalococcoides.428 Dehalococcoides_mccartyi.1867 - deh.1051 deh:cbdbA616 ddl; D-ala D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalococcoides.428 Dehalococcoides_mccartyi.1867 - deb.584 deb:DehaBAV1_0602 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalococcoides.428 Dehalococcoides_mccartyi.1867 - dev.986 dev:DhcVS_570 ddlA; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalococcoides.428 Dehalococcoides_mccartyi.1867 - deg.523 deg:DehalGT_0564 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalococcoides.428 Dehalococcoides_mccartyi.1867 - dmc.1100 dmc:btf_589 ddl; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalococcoides.428 Dehalococcoides_mccartyi.1867 - dmd.1099 dmd:dcmb_635 ddl; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalococcoides.428 Dehalococcoides_mccartyi.1869 - dmg.555 dmg:GY50_0555 ddl; D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalococcoides.428 Dehalococcoides_mccartyi.1867 - dmx.596 dmx:X792_03060 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalococcoides.428 Dehalococcoides_mccartyi.1868 - dmy.546 dmy:X793_02805 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalococcoides.428 Dehalococcoides_mccartyi.1867 - dmz.500 dmz:X794_02545 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalococcoides.428 - - duc.564 duc:UCH007_05510 putative D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalogenimonas.967 - - dly.932 dly:Dehly_0995 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalogenimonas.967 - - dew.660 dew:DGWBC_0681 dalaninedalanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.5730 Dehalogenimonas.967 - - dfo.1013 dfo:Dform_01068 ddl; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.8037 - - - atm.661 atm:ANT_06070 putative D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.8037 - - - abat.2199 abat:CFX1CAM_2250 putative D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chloroflexi.8037 - - - pbf.1416 pbf:CFX0092_A1324 putative D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Planctomycetes.1943 Gemmata.1850 - - ges.3469 ges:VT84_18260 ddl_1; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Planctomycetes.1943 Gemmata.1850 - - gog.4084 gog:C1280_23480 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Planctomycetes.1943 - - - saci.5472 saci:Sinac_6203 ATP-grasp enzyme, D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Synergistetes.652 - - - aco.211 aco:Amico_0188 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Synergistetes.652 - - - tli.1181 tli:Tlie_1220 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Synergistetes.652 - - - amo.1751 amo:Anamo_1863 ATP-grasp enzyme, D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chlorobi.4718 - - - ial.2935 ial:IALB_3090 ddl; D-alanine-D-alanine ligase-like protein; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Chlorobi.4718 - - - mro.1800 mro:MROS_1829 D-alanine-D-alanine ligase-like protein; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Thermotogae.7940 Pseudothermotoga.352 - - tle.828 tle:Tlet_0834 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 Thermotogae.7940 Pseudothermotoga.352 - - phy.1458 phy:AJ81_07620 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 - - - - cex.46 cex:CSE_13460 putative D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.100480 Bacteria.363763 - - - - cex.46 cex:CSE_14320 putative D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4]