# OC Root 2nd 3rd 4th 5th 6th PC Gene/Definition OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xylella.1124 Xylella_fastidiosa.2143 xfa.835 xfa:XF_0799 D-alanine--D-alanine ligase B; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xylella.1124 Xylella_fastidiosa.2143 xft.1751 xft:PD_1864 ddlB; D-alanine--D-alanine ligase B; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xylella.1124 Xylella_fastidiosa.2143 xfm.1792 xfm:Xfasm12_2046 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xylella.1124 Xylella_fastidiosa.2143 xfn.1860 xfn:XfasM23_1967 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xylella.1124 Xylella_fastidiosa.2143 xff.719 xff:XFLM_03780 ddl; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xylella.1124 Xylella_fastidiosa.2143 xfl.225 xfl:P303_00515 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xylella.1124 Xylella_fastidiosa.2143 xfs.2240 xfs:D934_13165 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xylella.1124 Xylella_fastidiosa.2143 xfh.1899 xfh:XFHB_11275 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xylella.1124 - xtw.1953 xtw:AB672_11480 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_campestris.2534 xcc.737 xcc:XCC0727 ddl; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_campestris.2534 xcb.3422 xcb:XC_3508 D-alanine-D-alanine ligase B; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_campestris.2534 xca.3549 xca:xcc-b100_3629 ddlB; D-alanine-D-alanine ligase B; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_campestris.2534 xcp.889 xcp:XCR_0893 D-alanine--D-alanine ligase B; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_campestris.6621 xcv.840 xcv:XCV0832 ddlB; D-alanine--D-alanine ligase B; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_axonopodis.5040 xax.777 xax:XACM_0777 ddl; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_citri.3993 xac.791 xac:XAC0781 ddlB; D-alanine-D-alanine ligase B; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_citri.3993 xci.3672 xci:XCAW_03800 ddlA; D-alanine-D-alanine ligase and related ATP-grasp enzyme; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_citri.3993 xct.878 xct:J151_00906 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_citri.3993 xcj.875 xcj:J158_00903 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_citri.3993 xcu.875 xcu:J159_00903 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_citri.3993 xcn.872 xcn:J169_00902 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_citri.3993 xcw.876 xcw:J162_00902 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_citri.3993 xcr.876 xcr:J163_00902 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_citri.3993 xcm.876 xcm:J164_00902 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_citri.3993 xcf.870 xcf:J172_00897 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_citri.3993 xfu.730 xfu:XFF4834R_chr07850 ddlB; Probable D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_axonopodis.1097 xao.816 xao:XAC29_03985 ddl; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_oryzae.2624 xoo.3322 xoo:XOO3824 ddlB; D-alanine-D-alanine ligase B; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_oryzae.2624 xom.3407 xom:XOO3602 XOO3602; D-alanine-D-alanine ligase B; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_oryzae.2624 xop.3766 xop:PXO_04365 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_oryzae.2624 xoy.896 xoy:AZ54_04790 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_oryzae.2624 xor.808 xor:XOC_0845 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 Xanthomonas_oryzae.2624 xoz.3138 xoz:BE73_20155 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.9044 - xal.2679 xal:XALC_2812 ddl; probable d-alanine-d-alanine ligase protein; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.9044 - xsa.1632 xsa:SB85_09035 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.144 - xtn.2813 xtn:FD63_15995 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 - xfr.652 xfr:BER92_03785 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 - xga.901 xga:BI317_04740 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 - xve.3150 xve:BJD12_16890 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 - xpe.2373 xpe:BJD13_12815 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 - xhr.2132 xhr:XJ27_11465 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 - xph.1297 xph:XppCFBP6546_07530 XppCFBP6546P_07530; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Xanthomonas.143 - xva.749 xva:C7V42_04350 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Stenotrophomonas.2729 Stenotrophomonas_maltophilia.3085 sml.716 sml:Smlt0757 ddlB; putative D-alanine--D-alanine ligase B; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Stenotrophomonas.2729 Stenotrophomonas_maltophilia.3085 smt.609 smt:Smal_0604 D-alanine/D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Stenotrophomonas.2729 Stenotrophomonas_maltophilia.3085 buj.625 buj:BurJV3_0622 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Stenotrophomonas.2729 Stenotrophomonas_maltophilia.3085 smz.613 smz:SMD_0645 ddlB; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Stenotrophomonas.2729 - srh.815 srh:BAY15_0805 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Stenotrophomonas.2729 Stenotrophomonas_sp_.3162 slm.2384 slm:BIZ42_12375 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Stenotrophomonas.2729 Stenotrophomonas_sp_.11559 sten.659 sten:CCR98_03365 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Stenotrophomonas.2729 Stenotrophomonas_sp_.8209 stem.662 stem:CLM74_03365 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Pseudoxanthomonas.1770 Pseudoxanthomonas_suwonensis.1674 psu.641 psu:Psesu_0641 D-alanine/D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Pseudoxanthomonas.1770 Pseudoxanthomonas_suwonensis.1674 psuw.2168 psuw:WQ53_11525 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Pseudoxanthomonas.4731 - psd.582 psd:DSC_02890 ddl; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Lysobacter.1131 Lysobacter_antibioticus.203 lab.1181 lab:LA76x_1176 ddl; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Lysobacter.1131 Lysobacter_antibioticus.203 laq.1154 laq:GLA29479_2029 ddlB; D-alanine--D-alanine ligase B; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Lysobacter.1131 - lcp.4176 lcp:LC55x_4269 ddl; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Lysobacter.1131 - lgu.3980 lgu:LG3211_4074 ddlB; ddlB; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Lysobacter.1131 Lysobacter_enzymogenes.64 lez.4063 lez:GLE_4129 ddlA; D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Lysobacter.1131 Lysobacter_enzymogenes.64 lem.1068 lem:LEN_1065 ddlA; D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Lysobacter.11482 - lmb.774 lmb:C9I47_0768 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Lysobacter.1131 - lyt.181 lyt:DWG18_00795 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Luteimonas.3292 - lum.1009 lum:CNR27_05275 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Luteimonas.1579 - lue.1535 lue:DCD74_08130 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 - - fau.398 fau:Fraau_0374 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 - - rhd.3053 rhd:R2APBS1_3267 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Dyella.182 - dji.3041 dji:CH75_16480 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Dyella.182 - dja.1166 dja:HY57_06325 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 Dyella.6490 - dtx.2276 dtx:ATSB10_22920 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 - - dko.3137 dko:I596_555 D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 - - lrz.766 lrz:BJI69_03690 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 - - xba.401 xba:C7S18_01315 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168855 Bacteria.52366 Proteobacteria.231326 Gammaproteobacteria.9880 - - sdf.385 sdf:ACG33_01710 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4]