# OC Root 2nd 3rd 4th 5th 6th PC Gene/Definition OC.168879 Bacteria.52378 Proteobacteria.78168 Deltaproteobacteria.68254 Desulfovibrio.13883 Desulfovibrio_vulgaris.3676 dvm.1237 dvm:DvMF_1246 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Proteobacteria.78168 Alphaproteobacteria.123004 - - bvr.1175 bvr:BVIR_209 D-alanine--D-alanine ligase A; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Proteobacteria.433167 Alphaproteobacteria.274740 Ruegeria.6982 Ruegeria_sp_.6914 rue.2673 rue:DT065_14530 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Proteobacteria.78168 Alphaproteobacteria.123004 Croceicoccus.2159 - cman.1458 cman:A9D14_07570 hypothetical protein; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.84112 Firmicutes___Bacilli.64177 Bacillus.72997 - bco.3244 bco:Bcell_3337 D-alanine/D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.84112 Firmicutes___Bacilli.64177 Paenibacillus.46269 - pnp.185 pnp:IJ22_00950 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.48195 Firmicutes___Bacilli.143540 Kyrpidia.16 - bts.1018 bts:Btus_1041 D-alanine/D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.48195 Firmicutes___Bacilli.143540 Kyrpidia.16 - kyr.2006 kyr:CVV65_10920 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.117558 Firmicutes___Clostridia.38929 - - esr.895 esr:ES1_10970 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.117558 Firmicutes___Clostridia.38929 - - esu.413 esu:EUS_04900 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.117558 Firmicutes___Clostridia.38929 Butyrivibrio.1597 - bpb.2766 bpb:bpr_I2793 ddlA; D-alanine-D-alanine ligase DdlA; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.117558 Firmicutes___Clostridia.38929 Butyrivibrio.1597 - bhu.2588 bhu:bhn_I2614 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.48195 Firmicutes___Clostridia.177290 - - pbq.1413 pbq:C3V37_07670 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.48195 Firmicutes___Clostridia.187638 - - tte.2265 tte:TTE2545 DdlA2; D-alanine-D-alanine ligase and related ATP-grasp enzymes; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.48195 - - - ped.397 ped:ING2D1G_0420 ddl; D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.48195 - - - cad.1031 cad:Curi_c10950 ddl; D-alanine--D-alanine ligase Ddl; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.84112 - - - tur.1181 tur:AT726_06885 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Firmicutes.311246 - - - erb.1405 erb:A4V01_07170 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Actinobacteria.272150 - - - cwo.4518 cwo:Cwoe_4918 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Cyanobacteria.72636 - - - cmp.3127 cmp:Cha6605_3728 ATP-grasp enzyme, D-alanine-D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Chlamydiae.7811 - - - wch.1215 wch:wcw_1300 ddlA3; putative D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Spirochaetes.29558 Treponema.10256 - - tpi.432 tpi:TREPR_0367 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Bacteroidetes.71895 - - - pary.1632 pary:A4V02_09170 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Bacteroidetes.71895 - - - bvs.991 bvs:BARVI_05185 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Bacteroidetes.71894 Salinibacter.1373 - - sru.2124 sru:SRU_2197 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Bacteroidetes.71894 Salinibacter.1373 - - srm.2401 srm:SRM_02423 ddlA; D-alanine--D-alanine ligase A; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Bacteroidetes.71894 Rhodothermus.831 - - rmr.989 rmr:Rmar_0998 D-alanine/D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Bacteroidetes.71894 Rhodothermus.831 - - rmg.1823 rmg:Rhom172_1868 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Bacteroidetes.71894 - - - rbar.988 rbar:AWN76_004980 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Bacteroidetes.71895 Mucilaginibacter.4025 Mucilaginibacter_sp_.2861 - muc.1623 muc:MuYL_1617 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Thermotogae.4598 Thermosipho.320 - - tme.479 tme:Tmel_0486 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Thermotogae.4598 Thermosipho.320 - - taf.1674 taf:THA_792 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Thermotogae.4598 Thermosipho.320 Thermosipho_sp_.1292 - thp.611 thp:BG95_03190 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 Thermotogae.4598 Thermosipho.320 Thermosipho_sp_.1292 - ther.616 ther:Y592_03200 D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] OC.168879 Bacteria.52378 - - - - mox.2151 mox:DAMO_2301 putative D-alanine--D-alanine ligase A (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4]