ID or terms query

OC.230112 - OC.230128 (36 sequences)

OC Root 2nd 3rd 4th 5th 6th PC Gene/Definition
OC.230112 Bacteria.152716 Chloroflexi.9855       tro.2485 tro:trd_A0605 RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43); K03086 RNA polymerase primary sigma factor
OC.230112 Bacteria.152716 Chloroflexi.9855       sti.2986 sti:Sthe_3130 RNA polymerase, sigma 70 subunit, RpoD subfamily; K03086 RNA polymerase primary sigma factor
OC.230113 Bacteria.152758 Armatimonadetes.3987       fgi.1438 fgi:OP10G_1356 RNA polymerase sigma factor RpoS; K03086 RNA polymerase primary sigma factor
OC.230113 Bacteria.152758 Spirochaetes.12641 Treponema.928 Treponema_pallidum.5   tpa.1001 tpa:TP_1012 RNA polymerase sigma-43 factor (sigA); K03087 RNA polymerase nonessential primary-like sigma factor
OC.230113 Bacteria.152758 Spirochaetes.12641 Treponema.928 Treponema_pallidum.5   tpw.948 tpw:TPANIC_1012 sigA; DNA-directed RNA polymerase sigma subunit RpoD family; K03087 RNA polymerase nonessential primary-like sigma factor
OC.230113 Bacteria.152758 Spirochaetes.12641 Treponema.928 Treponema_pallidum.5   tpp.999 tpp:TPASS_1012 sigA; RNA polymerase sigma-43 factor; K03087 RNA polymerase nonessential primary-like sigma factor
OC.230113 Bacteria.152758 Spirochaetes.12641 Treponema.928 Treponema_pallidum.5   tpu.1028 tpu:TPADAL_1012 sigA; DNA-directed RNA polymerase sigma subunit RpoD; K03087 RNA polymerase nonessential primary-like sigma factor
OC.230113 Bacteria.152758 Spirochaetes.12641 Treponema.928 Treponema_pallidum.5   tph.948 tph:TPChic_1012 RNA polymerase sigma-43 factor; K03087 RNA polymerase nonessential primary-like sigma factor
OC.230113 Bacteria.152758 Spirochaetes.12641 Treponema.928 Treponema_pallidum.5   tpo.946 tpo:TPAMA_1012 sigA; DNA-directed RNA polymerase sigma subunit RpoD family; K03087 RNA polymerase nonessential primary-like sigma factor
OC.230113 Bacteria.152758 Spirochaetes.12641 Treponema.928 Treponema_pallidum.5   tpas.945 tpas:TPSea814_001012 RNA polymerase sigma-43 factor; K03087 RNA polymerase nonessential primary-like sigma factor
OC.230113 Bacteria.152758 Spirochaetes.12641 Treponema.928 Treponema_pallidum.5   tpc.1035 tpc:TPECDC2_1012 sigA; DNA-directed RNA polymerase sigma subunit RpoD; K03087 RNA polymerase nonessential primary-like sigma factor
OC.230113 Bacteria.152758 Spirochaetes.12641 Treponema.928 Treponema_pallidum.5   tpg.1035 tpg:TPEGAU_1012 sigA; DNA-directed RNA polymerase sigma subunit RpoD; K03087 RNA polymerase nonessential primary-like sigma factor
OC.230113 Bacteria.152758 Spirochaetes.12641 Treponema.928 Treponema_pallidum.5   tpm.1035 tpm:TPESAMD_1012 sigA; DNA-directed RNA polymerase sigma subunit RpoD; K03087 RNA polymerase nonessential primary-like sigma factor
OC.230113 Bacteria.152758 Spirochaetes.12641 Treponema.928 Treponema_pallidum.5   tpb.1031 tpb:TPFB_1012 sigA; DNA-directed RNA polymerase sigma subunit RpoD; K03087 RNA polymerase nonessential primary-like sigma factor
OC.230113 Bacteria.152758 Spirochaetes.12641 Treponema.928     tpl.975 tpl:TPCCA_1012 rpoD2; DNA-directed RNA polymerase sigma subunit RpoD; K03087 RNA polymerase nonessential primary-like sigma factor
OC.230114 Bacteria.152818         vbc.1568 vbc:C5Q97_08045 RNA polymerase subunit sigma; K03086 RNA polymerase primary sigma factor
OC.230115 Bacteria.152755         vbc.1828 vbc:C5Q97_09950 hypothetical protein; K03086 RNA polymerase primary sigma factor
OC.230116 Bacteria.152711 Firmicutes.276207 Firmicutes___Clostridia.143819 Thermoanaerobacterium.2389   txy.918 txy:Thexy_0971 RNA polymerase, sigma 32 subunit, RpoH; K03086 RNA polymerase primary sigma factor
OC.230116 Bacteria.152711 Firmicutes.276207 Firmicutes___Clostridia.143819 Thermoanaerobacterium.2389   tsh.2223 tsh:Tsac_2283 RNA polymerase, sigma 32 subunit, RpoH; K03086 RNA polymerase primary sigma factor
OC.230117 Bacteria.152760 Firmicutes.236116 Firmicutes___Clostridia.82856     tte.1894 tte:TTE2104 RpoD5; DNA-directed RNA polymerase sigma subunits (sigma70/sigma32); K03086 RNA polymerase primary sigma factor
OC.230117 Bacteria.152760 Firmicutes.236116 Firmicutes___Clostridia.82856 Thermoanaerobacterium.3258   tsh.346 tsh:Tsac_0335 RNA polymerase, sigma 32 subunit, RpoH; K03086 RNA polymerase primary sigma factor
OC.230118 Bacteria.1068195 Proteobacteria.532985 Betaproteobacteria.225520 Tremblaya.132   tpj.8 tpj:TPPAVE_009 rpoD; RNA polymerase, sigma 70 (sigma D) factor; K03086 RNA polymerase primary sigma factor
OC.230119 Bacteria.152797 Spirochaetes.11676 Treponema.4027     tde.131 tde:TDE0070 sigma-70 family RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor
OC.230119 Bacteria.152797 Spirochaetes.11676 Treponema.4027     tped.568 tped:TPE_0543 sigma-70 family RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor
OC.230119 Bacteria.152797 Spirochaetes.11676 Treponema.4027     tpk.1060 tpk:JO40_06295 RNA polymerase sigma70; K03086 RNA polymerase primary sigma factor
OC.230120 Bacteria.152767 Spirochaetes.26709 Treponema.7171     taz.1663 taz:TREAZ_1809 rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
OC.230121 Bacteria.152743 Actinobacteria.33285 Streptomyces.107393     spun.1555 spun:BFF78_08405 RNA polymerase subunit sigma-70; K03086 RNA polymerase primary sigma factor
OC.230122 Bacteria.152725 Tenericutes.20136       tbm.229 tbm:BK010_00360 hypothetical protein; K03086 RNA polymerase primary sigma factor
OC.230123 Bacteria.152761 Firmicutes.211970 Firmicutes___Bacilli.183972 Staphylococcus.6744 Staphylococcus_xylosus.2465 sxl.40 sxl:SXYLSMQ121_0033 RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
OC.230123 Bacteria.152761 Firmicutes.211970 Firmicutes___Bacilli.183972 Staphylococcus.6744   scap.1924 scap:AYP1020_1987 rpoD_2; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
OC.230124 Bacteria.152723 Chloroflexi.14820 Roseiflexus.4594     rrs.2144 rrs:RoseRS_2257 RNA polymerase, sigma 32 subunit, RpoH; K03086 RNA polymerase primary sigma factor
OC.230125 Bacteria.152778 Proteobacteria.112865 Gammaproteobacteria.371407 Shewanella.14335   saz.277 saz:Sama_0276 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like protein; K03086 RNA polymerase primary sigma factor
OC.230126 Bacteria.152777 Proteobacteria.159231 Betaproteobacteria.45417 Thauera.6581 Thauera_sp_.4614 tmz.358 tmz:Tmz1t_0338 sigma-70 region 2 domain protein; K03086 RNA polymerase primary sigma factor
OC.230126 Bacteria.152777 Proteobacteria.159231 Alphaproteobacteria.297201 Thalassospira.4660   thac.3975 thac:CSC3H3_20580 hypothetical protein; K03086 RNA polymerase primary sigma factor
OC.230127 Bacteria.776683 Cyanobacteria.62404 Synechococcus.11123 Synechococcus_sp_.9115   syg.1226 syg:sync_1263 Type II alternative RNA polymerase sigma factor, sigma-70 family protein; K03086 RNA polymerase primary sigma factor
OC.230128 Bacteria.1068191 Proteobacteria.532979 Betaproteobacteria.225512 Tremblaya.123 Candidatus_Tremblaya_princeps.123 tpq.102 tpq:TCP_140 rpoD; RNA polymerase, sigma 70 subunit; K03086 RNA polymerase primary sigma factor

( plain text of OC.230112 - OC.230128 ) ( previous ver. )

KOs in cluster

    K03086 (24) RNA polymerase primary sigma factor
    K03087 (12) RNA polymerase nonessential primary-like...

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Neighbor clusters

OC.230112 (2) OC.230113 (13) OC.230114 (1) OC.230115 (1) OC.230116 (2) OC.230117 (2) OC.230118 (1) OC.230119 (3) OC.230120-230126 OC.230127 (1) OC.230128 (1) OC.230004...230111 OC.230129...230304