Multiple Sequence Alignment by PRRN
ETE3
MAFFT
CLUSTALW
PRRN
Help
Specify Parameters :
Sequence Type
:
PROTEIN
DNA
Score Matrix
:
PAM0
PAM50
PAM100
PAM150
PAM200
PAM250
PAM300
BLOSUM45
BLOSUM62
BLOSUM80
Gap Penalty
(PROTEIN) :
Open:
, Extend:
, Background:
(0 .. 100)
Gap Penalty
(DNA) :
Open:
, Extend:
, Background:
(0 .. 100)
Output Format
:
Native
PHYLIP
GCG
CLUSTAL
GDE
Method
:
Iterative refinement
Sequential (input order) + Iterative refinement
Sequential (from shorter) + Iterative refinement
Sequential (from longer) + Iterative refinement
Sequential (random) + Iterative refinement
Progressive (input alignment) + Iterative refinement
Progressive (amino acid content) + Iterative refinement
Progressive (pairwise alignment) + Iterative refinement
Window Size
:
(0 .. 1000)
Score Matrix (Conserved Regions)
:
PAM0
PAM50
PAM100
PAM150
PAM200
PAM250
PAM300
Threshold Value (Conserved Regions)
:
(0 .. 1000)
Enter your sequences
(FASTA format)
:
Restrictions of the sequence size:
1. [The number of sequences] <= 200
2. [The maximum length] <= 2000
3. [The number of sequences] x [The maximum length] <= 50000
File Upload
Copy & Paste
KEGG
GenomeNet
Kyoto University Bioinformatics Center
