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proteomic tree viewer image proteomic tree viewer image

4,240 complete viral genomes (1,811 EVGs and 2,429 RVGs)

Parameters

name applicable layout description default example
circular - Circular layout of dendrogram. For large tree, use "show_labels=off" and "show_nodes=off" at the same time. off (rectangular layout) https://www.genome.jp/tools/mg_viewer2/tree/set2.bionj?circular=on
branchlen rectangular / circular Branch length is equalized ('same') or as is ('as.is'), or logarithm ('log') as.is(rectangular) / same(circular) https://www.genome.jp/tools/mg_viewer2/tree/set2.bionj?branchlen=log
minbranchlen rectangular / circular Visible minimum length from root (black hole size) [efficient only when branch length is logarithm ('log')] 1e-3 https://www.genome.jp/tools/mg_viewer2/tree/set2.bionj?branchlen=log&minbranchlen=1e-7
degree circular Degree of dendrogram [efficient only for circular layout] 340 https://www.genome.jp/tools/mg_viewer2/tree/set2.bionj?circular=on&degree=350
show_ticks rectangular / circular Ticks are displayed ('on') or not displayed ('off'). on https://www.genome.jp/tools/mg_viewer2/set2.bionj?circular=on&degree=360&show_ticks=off
show_labels rectangular / circular Node label is displayed ('on') or not displayed ('off'). To see condenced view for large tree, use 'off' in rectangular layout. on https://www.genome.jp/tools/mg_viewer2/set2.bionj?show_labels=off
show_nodes rectangular / circular Link to alingnment viewer is displayed ('on') or not displayed ('off'). on https://www.genome.jp/tools/mg_viewer2/set2.bionj?show_nodes=off
show_colorbox rectangular / circular Color boxes are displayed ('on') or not displayed ('off'). on https://www.genome.jp/tools/mg_viewer2/set2.bionj?show_colorbox=off
legend rectangular / circular legend are displayed ('on') or not displayed ('off'). on https://www.genome.jp/tools/mg_viewer2/set2.bionj?legend=off
r_dendro circular Width and Height of dendrogram 400 https://www.genome.jp/tools/mg_viewer2/tree/set2.bionj?r_dendro=1000&circular=on&actual_branchlen=on&show_labels=off&show_nodes=off
w_dendro rectangular Width of dendrogram 800 https://www.genome.jp/tools/mg_viewer2/tree/set2.bionj?w_dendro=280
w_label rectangular Width of label area 1200 https://www.genome.jp/tools/mg_viewer2/tree/set2.bionj?w_label=400